View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11160_low_7 (Length: 481)
Name: NF11160_low_7
Description: NF11160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11160_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 17 - 302
Target Start/End: Original strand, 4744387 - 4744672
Alignment:
| Q |
17 |
aacaccccaacataaattgcattcctaaaacattgaattagacaatttcaacaaaagtgataggagagacgtggtgtggttcaattttattaaggaaagg |
116 |
Q |
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| T |
4744387 |
aacaccccaacataaattgcattcctaaaacattgaattagacaattttaacaaaagtgataggagagacgtggtgtggttcaattttattaaggaaagg |
4744486 |
T |
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| Q |
117 |
aagagggaaatgaatttgatgcttaccaagtagttaattcttattaggtactccaaaagtaaacctacatgatgatttccatgagattggagtaaatatt |
216 |
Q |
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| T |
4744487 |
aagagggaaatgaatttgatgcttaccaagtagttaattcttattaggtactccaaaagtaaacctacatgatgatttccatgagattggagtaaaaatt |
4744586 |
T |
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| Q |
217 |
gagaattcggaaatagagaaatgattacggagaagtgatttagcaactttgatgaattggggttgatgtattttgaatggtaattt |
302 |
Q |
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| T |
4744587 |
gcgaactgggaaatagataaatgattacggagaagtgatttagcaactttgatgaattggtgttgatgtattttgaatggtaattt |
4744672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 375 - 475
Target Start/End: Original strand, 4744668 - 4744768
Alignment:
| Q |
375 |
aatttcaggcttaagagcaaataaaattgttttttcggtctcattttaatagtcgttatagggttgtgtgcggttatgaaagaaatgttcagttgaattg |
474 |
Q |
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| T |
4744668 |
aatttcaggcttaagagcaaataaaattgttttttccgtctcattttaatagtcgttatagagttgtgtgcggttatcaaagaaatgttcagttgaattg |
4744767 |
T |
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| Q |
475 |
a |
475 |
Q |
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| T |
4744768 |
a |
4744768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 324 - 460
Target Start/End: Original strand, 4751154 - 4751290
Alignment:
| Q |
324 |
tcataaatgtaacaacattataaaataaatattattatggcatgaaaataaaatttcaggcttaagagcaaataaaattgttttttcggtctcattttaa |
423 |
Q |
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| T |
4751154 |
tcataaacgtaataacattataaaataaaaattgttatgacatgcaaattaaattttaggcttaagagcaaataaaattcctccctccgtctcattttaa |
4751253 |
T |
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| Q |
424 |
tagtcgttatagggttgtgtgcggttatgaaagaaat |
460 |
Q |
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| T |
4751254 |
tggtcgttttagagttgtgtgcgattattaaggaaat |
4751290 |
T |
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