View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11160_low_9 (Length: 464)

Name: NF11160_low_9
Description: NF11160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11160_low_9
NF11160_low_9
[»] chr7 (32 HSPs)
chr7 (18-367)||(24952637-24952986)
chr7 (363-454)||(35080278-35080369)
chr7 (366-426)||(9805426-9805486)
chr7 (366-454)||(35081573-35081661)
chr7 (309-367)||(15716252-15716310)
chr7 (364-418)||(23621989-23622043)
chr7 (309-351)||(15954623-15954665)
chr7 (309-351)||(26605058-26605100)
chr7 (309-351)||(35291328-35291370)
chr7 (309-367)||(46575103-46575161)
chr7 (309-353)||(23406654-23406698)
chr7 (309-352)||(3214887-3214930)
chr7 (316-367)||(23110439-23110490)
chr7 (309-352)||(38665459-38665502)
chr7 (309-351)||(6791446-6791488)
chr7 (309-367)||(24812424-24812482)
chr7 (321-367)||(38666216-38666262)
chr7 (310-367)||(30076987-30077044)
chr7 (310-351)||(41968435-41968476)
chr7 (309-361)||(18520267-18520319)
chr7 (309-340)||(29606270-29606301)
chr7 (313-348)||(35358068-35358103)
chr7 (366-424)||(12961982-12962040)
chr7 (309-353)||(5215384-5215429)
chr7 (359-424)||(16957263-16957328)
chr7 (309-353)||(21919690-21919735)
chr7 (309-338)||(32529182-32529211)
chr7 (371-415)||(3769632-3769676)
chr7 (307-351)||(17306601-17306645)
chr7 (312-340)||(37504564-37504592)
chr7 (307-367)||(39558922-39558982)
chr7 (309-337)||(47642875-47642903)
[»] chr4 (34 HSPs)
chr4 (365-454)||(8747688-8747777)
chr4 (364-426)||(8896953-8897015)
chr4 (366-426)||(8749046-8749106)
chr4 (368-426)||(33997896-33997954)
chr4 (309-367)||(1857150-1857208)
chr4 (309-367)||(29364528-29364586)
chr4 (309-367)||(27990538-27990596)
chr4 (316-367)||(24535491-24535542)
chr4 (307-350)||(24979942-24979985)
chr4 (309-367)||(126924-126982)
chr4 (309-351)||(26118115-26118157)
chr4 (309-367)||(28835790-28835848)
chr4 (366-424)||(40168637-40168695)
chr4 (362-424)||(40169781-40169843)
chr4 (309-351)||(42177344-42177386)
chr4 (310-367)||(8256788-8256845)
chr4 (310-367)||(8270206-8270263)
chr4 (309-350)||(29582329-29582370)
chr4 (309-350)||(36631038-36631079)
chr4 (310-367)||(50733204-50733261)
chr4 (308-340)||(50608058-50608090)
chr4 (307-367)||(56303184-56303244)
chr4 (309-367)||(4720817-4720875)
chr4 (309-351)||(23058767-23058809)
chr4 (309-351)||(30348165-30348207)
chr4 (313-351)||(34829085-34829123)
chr4 (309-351)||(43147859-43147901)
chr4 (309-353)||(19527083-19527128)
chr4 (367-416)||(31435862-31435910)
chr4 (309-353)||(39103539-39103584)
chr4 (310-351)||(52607571-52607612)
chr4 (363-424)||(55780382-55780443)
chr4 (363-424)||(55844562-55844623)
chr4 (309-353)||(33491164-33491208)
[»] chr3 (50 HSPs)
chr3 (363-454)||(32829735-32829826)
chr3 (368-426)||(10584082-10584140)
chr3 (361-426)||(51220602-51220667)
chr3 (368-424)||(26722533-26722589)
chr3 (358-426)||(51219452-51219520)
chr3 (310-353)||(27045054-27045097)
chr3 (363-426)||(53157176-53157238)
chr3 (309-367)||(53289232-53289290)
chr3 (367-416)||(32831100-32831149)
chr3 (364-424)||(21326316-21326376)
chr3 (307-367)||(46507361-46507420)
chr3 (313-367)||(4817082-4817136)
chr3 (309-367)||(29388697-29388755)
chr3 (309-351)||(37520704-37520746)
chr3 (309-367)||(39987353-39987411)
chr3 (309-351)||(44653533-44653575)
chr3 (367-424)||(26723906-26723963)
chr3 (306-351)||(47746191-47746236)
chr3 (309-353)||(1129131-1129175)
chr3 (309-353)||(35501150-35501194)
chr3 (309-353)||(40478118-40478162)
chr3 (309-353)||(44379416-44379460)
chr3 (310-353)||(23456818-23456861)
chr3 (309-351)||(26884975-26885017)
chr3 (309-367)||(41982331-41982389)
chr3 (309-351)||(42621850-42621892)
chr3 (309-367)||(54428841-54428899)
chr3 (309-353)||(1021334-1021378)
chr3 (299-353)||(8966291-8966345)
chr3 (309-351)||(15997183-15997225)
chr3 (309-367)||(26850272-26850330)
chr3 (309-351)||(29806371-29806413)
chr3 (309-367)||(30349350-30349408)
chr3 (301-351)||(32636989-32637039)
chr3 (309-351)||(42479047-42479089)
chr3 (302-351)||(48795434-48795484)
chr3 (366-424)||(54539500-54539558)
chr3 (310-367)||(7352169-7352226)
chr3 (314-351)||(9507265-9507302)
chr3 (314-351)||(9515240-9515277)
chr3 (366-399)||(10583829-10583862)
chr3 (309-354)||(19547848-19547893)
chr3 (309-353)||(29698324-29698369)
chr3 (309-353)||(32121901-32121946)
chr3 (309-350)||(36220769-36220810)
chr3 (310-351)||(37127807-37127848)
chr3 (307-340)||(41217428-41217461)
chr3 (309-353)||(25834590-25834634)
chr3 (309-353)||(40474195-40474239)
chr3 (309-353)||(51344732-51344776)
[»] chr2 (26 HSPs)
chr2 (365-426)||(27552449-27552510)
chr2 (309-364)||(9589463-9589518)
chr2 (363-426)||(27553807-27553870)
chr2 (309-367)||(7673297-7673355)
chr2 (309-367)||(25331457-25331515)
chr2 (309-367)||(32602305-32602363)
chr2 (359-415)||(10851904-10851960)
chr2 (309-364)||(21404200-21404255)
chr2 (309-367)||(40495793-40495851)
chr2 (310-367)||(17451285-17451342)
chr2 (366-426)||(12812834-12812894)
chr2 (307-351)||(45157876-45157920)
chr2 (305-351)||(6945704-6945750)
chr2 (309-367)||(9122158-9122216)
chr2 (309-351)||(32401081-32401123)
chr2 (366-424)||(45413479-45413537)
chr2 (371-424)||(28847336-28847389)
chr2 (363-416)||(28851682-28851735)
chr2 (313-351)||(1580253-1580291)
chr2 (310-340)||(36754339-36754369)
chr2 (309-367)||(43439997-43440055)
chr2 (309-353)||(8333893-8333938)
chr2 (371-416)||(10853155-10853200)
chr2 (309-353)||(41555433-41555478)
chr2 (367-416)||(45412334-45412383)
chr2 (309-353)||(35895313-35895357)
[»] chr5 (36 HSPs)
chr5 (367-426)||(124529-124588)
chr5 (368-454)||(5504108-5504194)
chr5 (306-364)||(9604430-9604488)
chr5 (367-454)||(5502917-5503003)
chr5 (363-453)||(121344-121434)
chr5 (366-417)||(3597321-3597372)
chr5 (309-351)||(702312-702354)
chr5 (362-424)||(3598924-3598986)
chr5 (309-367)||(14434820-14434878)
chr5 (310-367)||(40803667-40803724)
chr5 (310-349)||(33210734-33210773)
chr5 (309-351)||(2852060-2852102)
chr5 (309-351)||(6260380-6260422)
chr5 (310-364)||(9910042-9910096)
chr5 (309-351)||(13127343-13127385)
chr5 (364-426)||(14190487-14190549)
chr5 (309-367)||(33678504-33678562)
chr5 (309-351)||(36427907-36427949)
chr5 (309-351)||(39816507-39816549)
chr5 (318-367)||(30753458-30753507)
chr5 (307-351)||(479674-479718)
chr5 (362-426)||(24242011-24242075)
chr5 (310-353)||(13119159-13119202)
chr5 (309-340)||(42597476-42597507)
chr5 (368-426)||(14189664-14189722)
chr5 (309-367)||(28318349-28318407)
chr5 (309-351)||(29960229-29960271)
chr5 (309-351)||(40563117-40563159)
chr5 (313-351)||(42486611-42486649)
chr5 (310-358)||(5140672-5140721)
chr5 (309-353)||(5512684-5512729)
chr5 (368-417)||(17415698-17415747)
chr5 (309-353)||(39939035-39939080)
chr5 (368-424)||(17414544-17414600)
chr5 (309-357)||(28332478-28332526)
chr5 (313-349)||(30753427-30753463)
[»] chr1 (46 HSPs)
chr1 (368-426)||(46312065-46312123)
chr1 (363-426)||(46525842-46525905)
chr1 (368-426)||(2999491-2999549)
chr1 (370-423)||(46524542-46524595)
chr1 (309-367)||(2249589-2249647)
chr1 (364-426)||(3000213-3000275)
chr1 (313-367)||(6966255-6966309)
chr1 (309-351)||(12105162-12105204)
chr1 (309-367)||(13202938-13202996)
chr1 (309-367)||(31821573-31821631)
chr1 (309-367)||(45622482-45622540)
chr1 (309-367)||(46641863-46641921)
chr1 (309-367)||(47544643-47544701)
chr1 (308-353)||(34038162-34038207)
chr1 (310-367)||(38718078-38718135)
chr1 (367-415)||(14512669-14512717)
chr1 (300-367)||(44264003-44264070)
chr1 (310-353)||(48760424-48760467)
chr1 (364-426)||(14204833-14204895)
chr1 (309-367)||(24003421-24003479)
chr1 (364-426)||(50379972-50380034)
chr1 (309-351)||(52345601-52345643)
chr1 (309-350)||(10408658-10408699)
chr1 (310-367)||(52861300-52861357)
chr1 (309-353)||(38261163-38261207)
chr1 (309-349)||(46362025-46362065)
chr1 (311-351)||(47693561-47693601)
chr1 (305-353)||(52180593-52180641)
chr1 (313-367)||(8396695-8396749)
chr1 (309-367)||(10348029-10348087)
chr1 (309-351)||(25702437-25702479)
chr1 (306-340)||(30572674-30572708)
chr1 (366-424)||(46313276-46313334)
chr1 (309-350)||(35873938-35873979)
chr1 (309-353)||(40054947-40054992)
chr1 (309-353)||(43916348-43916393)
chr1 (300-349)||(46235196-46235245)
chr1 (309-353)||(50631595-50631640)
chr1 (302-350)||(2247408-2247456)
chr1 (309-353)||(6468793-6468837)
chr1 (309-353)||(9588004-9588048)
chr1 (309-353)||(24230571-24230615)
chr1 (307-351)||(24381682-24381726)
chr1 (387-423)||(30107064-30107100)
chr1 (309-353)||(31530309-31530353)
chr1 (309-353)||(48976877-48976921)
[»] chr6 (19 HSPs)
chr6 (362-426)||(22417652-22417716)
chr6 (309-367)||(23416843-23416901)
chr6 (366-426)||(22418937-22418997)
chr6 (309-353)||(4509789-4509833)
chr6 (368-424)||(10120175-10120231)
chr6 (365-424)||(20409064-20409123)
chr6 (316-367)||(33574242-33574293)
chr6 (309-351)||(8549565-8549607)
chr6 (306-340)||(9687149-9687183)
chr6 (309-351)||(33574715-33574757)
chr6 (309-351)||(33574893-33574935)
chr6 (367-424)||(16864494-16864551)
chr6 (309-353)||(11763175-11763219)
chr6 (309-353)||(23069060-23069104)
chr6 (304-367)||(18772206-18772269)
chr6 (309-351)||(14779265-14779307)
chr6 (309-353)||(10965983-10966028)
chr6 (367-416)||(20410227-20410276)
chr6 (367-423)||(12181594-12181650)
[»] chr8 (20 HSPs)
chr8 (305-364)||(37675935-37675994)
chr8 (367-421)||(13883873-13883927)
chr8 (309-367)||(41720595-41720653)
chr8 (363-454)||(13882650-13882741)
chr8 (365-424)||(38612216-38612275)
chr8 (365-424)||(38613419-38613478)
chr8 (307-353)||(118170-118216)
chr8 (305-367)||(39646635-39646697)
chr8 (359-424)||(23039529-23039594)
chr8 (309-351)||(2749317-2749359)
chr8 (305-351)||(9497901-9497947)
chr8 (310-351)||(39300086-39300127)
chr8 (309-353)||(1043420-1043464)
chr8 (309-353)||(2261374-2261418)
chr8 (309-353)||(7128092-7128136)
chr8 (309-353)||(29454145-29454189)
chr8 (304-351)||(10706552-10706599)
chr8 (312-351)||(44000566-44000605)
chr8 (309-351)||(29265591-29265633)
chr8 (310-350)||(15231350-15231390)
[»] scaffold0923 (1 HSPs)
scaffold0923 (309-353)||(45-89)
[»] scaffold1319 (1 HSPs)
scaffold1319 (309-367)||(45-103)
[»] scaffold0667 (1 HSPs)
scaffold0667 (309-350)||(196-237)


Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 24952637 - 24952986
Alignment:
Q  18 aatatgagctattttctagtggccgcaacacaagtaacttcgaaagaacaaaagtgttgagagaggatctctttgttttgaaaaaatgtgagtgaagaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24952637 aatatgagctattttctagtggccgcaacacaagtaacttcgaaagaacaaaagtgttgagagaggatctctttgttttgaaaaaatgtgagtgaagaaa 24952736  T
Q  118 caatgtttaatactaaatactattgtacattatttcctatggcccgttcatttcctttgatgtaaaattaaagaaaaaatgtcagatacttattagtaaa 217  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24952737 caatgtttaatactaaatactactgtacattatttcctatggcccgttcatttcctttgatgtaaaattaaagaaaaaatgtcagatacttattagtaaa 24952836  T
Q  218 tcaaggttatcgatgtgaataaaatattgtgtgcctttccattaagagaataaatgtgatagatacttcgtaaataaatatattttcaagagaacttcta 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  24952837 tcaaggttatcgatgtgaataaaatattgtgtgcctttccattaagagaataaatgtgatagatacttcgtaaacaaatatattttcaagagaacttcta 24952936  T
Q  318 cggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||||||||||||||||| || ||||||| ||||| || |||||||||    
T  24952937 cggtacactcacaaaatgagatgtaccggtattcctacttcttaatttta 24952986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 363 - 454
Target Start/End: Original strand, 35080278 - 35080369
Alignment:
Q  363 ttttaggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaatnnnnnnnntgaatattttgccccctatg 454  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||    
T  35080278 tttttggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaataaaaaaaatgaatattttgccccctatg 35080369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 366 - 426
Target Start/End: Complemental strand, 9805486 - 9805426
Alignment:
Q  366 taggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaat 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  9805486 taggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggccctctaat 9805426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 366 - 454
Target Start/End: Complemental strand, 35081661 - 35081573
Alignment:
Q  366 taggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaatnnnnnnnntgaatattttgccccctatg 454  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||        ||||||||||||||||||||    
T  35081661 taggctaaactacagttttgaccccctaagtttgtcaatgttgcgattttggcgccctaataaaaaaaatgaatattttgccccctatg 35081573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 309 - 367
Target Start/End: Complemental strand, 15716310 - 15716252
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||    
T  15716310 gaacttctacggtacactcacaaaatgaggtgtaccggtactcctacttcttaatttta 15716252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 364 - 418
Target Start/End: Complemental strand, 23622043 - 23621989
Alignment:
Q  364 tttaggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggt 418  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  23622043 tttaggctaaactacagttttggcctcctaagtttgccaatgttgcgattttggt 23621989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 309 - 351
Target Start/End: Complemental strand, 15954665 - 15954623
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  15954665 gaacttctacggtacactcacaaaatgaggtgtaccggtactc 15954623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 26605058 - 26605100
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  26605058 gaacttctacggtacactcacaaaatgaggtgtaccggtactc 26605100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 35291328 - 35291370
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  35291328 gaacttctacggtacactcacaaaatgaggtgtaccggtactc 35291370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 309 - 367
Target Start/End: Original strand, 46575103 - 46575161
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||  || |||||||||    
T  46575103 gaacttctacggtacattcacaaaatgaggtgtaccggtactcctgcttcttaatttta 46575161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 23406654 - 23406698
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 353  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||    
T  23406654 gaacttatacggtacactcacaaaatgaggtgtaccggtactcct 23406698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 352
Target Start/End: Complemental strand, 3214930 - 3214887
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcc 352  Q
    |||||||||||||||||||||||| ||||||| |||||||||||    
T  3214930 gaacttctacggtacactcacaaagtgaggtgtaccggtactcc 3214887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 367
Target Start/End: Original strand, 23110439 - 23110490
Alignment:
Q  316 tacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||||||||||||||||||| || || ||||||||| |||||||||||||    
T  23110439 tacggtacactcacaaaatgagatgtactggtactcctgttttttaatttta 23110490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 352
Target Start/End: Original strand, 38665459 - 38665502
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcc 352  Q
    |||||||||||||||||||||||||||| ||| |||||||||||    
T  38665459 gaacttctacggtacactcacaaaatgaagtgtaccggtactcc 38665502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 6791446 - 6791488
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    |||||||||||||||||| ||||||||||||| ||||||||||    
T  6791446 gaacttctacggtacacttacaaaatgaggtgtaccggtactc 6791488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 367
Target Start/End: Complemental strand, 24812482 - 24812424
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    ||||||||||| |||||| ||||||| ||||| | |||||||||| |||||||||||||    
T  24812482 gaacttctacgatacactaacaaaataaggtgtatcggtactcctgttttttaatttta 24812424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 367
Target Start/End: Complemental strand, 38666262 - 38666216
Alignment:
Q  321 tacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||| ||||||||||||| |||||||||||| |||||||||||||    
T  38666262 tacacttacaaaatgaggtgtaccggtactcctgttttttaatttta 38666216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 367
Target Start/End: Complemental strand, 30077044 - 30076987
Alignment:
Q  310 aacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    ||||| |||||||||||||||||||||||||  |||||||||||  || |||||||||    
T  30077044 aacttttacggtacactcacaaaatgaggtgtgccggtactcctccttcttaatttta 30076987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 351
Target Start/End: Original strand, 41968435 - 41968476
Alignment:
Q  310 aacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    ||||||||||||||||||||||||||||||| | ||||||||    
T  41968435 aacttctacggtacactcacaaaatgaggtgtatcggtactc 41968476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 361
Target Start/End: Complemental strand, 18520319 - 18520267
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctatttttta 361  Q
    |||||| || ||||||||||||||||||| || ||||||||||||| ||||||    
T  18520319 gaacttttatggtacactcacaaaatgagatgtaccggtactcctacttttta 18520267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 340
Target Start/End: Original strand, 29606270 - 29606301
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtg 340  Q
    ||||||||||||||||||||||||||||||||    
T  29606270 gaacttctacggtacactcacaaaatgaggtg 29606301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 348
Target Start/End: Complemental strand, 35358103 - 35358068
Alignment:
Q  313 ttctacggtacactcacaaaatgaggtgcaccggta 348  Q
    |||||||||||||||||||||||||||| |||||||    
T  35358103 ttctacggtacactcacaaaatgaggtgtaccggta 35358068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 424
Target Start/End: Original strand, 12961982 - 12962040
Alignment:
Q  366 taggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtccccta 424  Q
    ||||||||||| ||||||| ||||||||| |||  ||||| ||||||||||| ||||||    
T  12961982 taggctaaactgcagttttaaccccctaactttcacaatggtgcgattttggcccccta 12962040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 5215429 - 5215384
Alignment:
Q  309 gaacttctacggtacac-tcacaaaatgaggtgcaccggtactcct 353  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  5215429 gaacttctacggtacacatcacaaattgaggtgtaccggtactcct 5215384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 424
Target Start/End: Complemental strand, 16957328 - 16957263
Alignment:
Q  359 ttaattttaggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtccccta 424  Q
    ||||||||||||||||   || |||| ||||||||||||||| || ||||| ||||||| ||||||    
T  16957328 ttaattttaggctaaaacgcactttttaccccctaagtttgcaaaagttgcaattttggcccccta 16957263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 21919690 - 21919735
Alignment:
Q  309 gaacttctacggtacac-tcacaaaatgaggtgcaccggtactcct 353  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  21919690 gaacttctacggtacacctcacaaattgaggtgtaccggtactcct 21919735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 338
Target Start/End: Original strand, 32529182 - 32529211
Alignment:
Q  309 gaacttctacggtacactcacaaaatgagg 338  Q
    ||||||||||||||||||||||||||||||    
T  32529182 gaacttctacggtacactcacaaaatgagg 32529211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 415
Target Start/End: Complemental strand, 3769676 - 3769632
Alignment:
Q  371 taaactacagttttgaccccctaagtttgccaatgttgcgatttt 415  Q
    ||||||| | ||||||||||||||||||  |||||||||||||||    
T  3769676 taaactataattttgaccccctaagtttcacaatgttgcgatttt 3769632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 351
Target Start/End: Original strand, 17306601 - 17306645
Alignment:
Q  307 gagaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    ||||||||||| |||||||||||||| |||| || ||||||||||    
T  17306601 gagaacttctatggtacactcacaaagtgagatgtaccggtactc 17306645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 340
Target Start/End: Original strand, 37504564 - 37504592
Alignment:
Q  312 cttctacggtacactcacaaaatgaggtg 340  Q
    |||||||||||||||||||||||||||||    
T  37504564 cttctacggtacactcacaaaatgaggtg 37504592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 367
Target Start/End: Complemental strand, 39558982 - 39558922
Alignment:
Q  307 gagaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||||||||| ||||||| | ||||||||||| |||||| || ||| || |||||||||    
T  39558982 gagaacttctacagtacacttataaaatgaggtgtaccggtccttctacttcttaatttta 39558922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 337
Target Start/End: Complemental strand, 47642903 - 47642875
Alignment:
Q  309 gaacttctacggtacactcacaaaatgag 337  Q
    |||||||||||||||||||||||||||||    
T  47642903 gaacttctacggtacactcacaaaatgag 47642875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 365 - 454
Target Start/End: Original strand, 8747688 - 8747777
Alignment:
Q  365 ttaggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaatnnnnnnnntgaatattttgccccctatg 454  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||        ||||||||||||||||||||    
T  8747688 ttaggctaaactacagttttgaccccttaagtttgccaatgttgcgattttggccccctaataaaaaaaatgaatattttgccccctatg 8747777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 364 - 426
Target Start/End: Complemental strand, 8897015 - 8896953
Alignment:
Q  364 tttaggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaat 426  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  8897015 tttaggctaaactacagttttgactccctaagtttgccaatgttacgattttggtcccctaat 8896953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 366 - 426
Target Start/End: Complemental strand, 8749106 - 8749046
Alignment:
Q  366 taggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaat 426  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||    
T  8749106 taggctaaactacacttttgaccccttaagtttgccaatgttgcgattttggccccctaat 8749046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 368 - 426
Target Start/End: Complemental strand, 33997954 - 33997896
Alignment:
Q  368 ggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaat 426  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||    
T  33997954 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttgaccccctaat 33997896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 309 - 367
Target Start/End: Complemental strand, 1857208 - 1857150
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  || |||||||||    
T  1857208 gaacttctacggtacactcacaaaatgaggtgtaccggtactcctgcttcttaatttta 1857150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 309 - 367
Target Start/End: Complemental strand, 29364586 - 29364528
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||  ||||||||||||    
T  29364586 gaacttctactgtacactcacaaaatgaggtgtaccggtactcctgctttttaatttta 29364528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 309 - 367
Target Start/End: Original strand, 27990538 - 27990596
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||  || |||||||||    
T  27990538 gaacttctacgatacactcacaaaatgaggtgtaccggtactcctgcttcttaatttta 27990596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 367
Target Start/End: Original strand, 24535491 - 24535542
Alignment:
Q  316 tacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    ||||||||||||||||||||||||| ||||||||||||  || |||||||||    
T  24535491 tacggtacactcacaaaatgaggtgtaccggtactcctgcttcttaatttta 24535542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 350
Target Start/End: Original strand, 24979942 - 24979985
Alignment:
Q  307 gagaacttctacggtacactcacaaaatgaggtgcaccggtact 350  Q
    |||||||||||||||||||||||||||| ||||| |||||||||    
T  24979942 gagaacttctacggtacactcacaaaataaggtgtaccggtact 24979985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 367
Target Start/End: Complemental strand, 126982 - 126924
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||||||||||||||||| ||||||||||| | ||||||||||  || |||||||||    
T  126982 gaacttctacggtacactcataaaatgaggtgtatcggtactcctgcttcttaatttta 126924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 351
Target Start/End: Complemental strand, 26118157 - 26118115
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    ||||||||||||||||||||||| |||||||| ||||||||||    
T  26118157 gaacttctacggtacactcacaagatgaggtgtaccggtactc 26118115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 367
Target Start/End: Original strand, 28835790 - 28835848
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||| ||||||||||||||||||||||||| || |||||||||  || |||||||||    
T  28835790 gaacttttacggtacactcacaaaatgaggtgaactggtactcctgcttcttaatttta 28835848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 424
Target Start/End: Original strand, 40168637 - 40168695
Alignment:
Q  366 taggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtccccta 424  Q
    ||||||||||| ||||||||||||||||| |||  ||||| ||||||||||| ||||||    
T  40168637 taggctaaactgcagttttgaccccctaacttttacaatggtgcgattttggcccccta 40168695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 424
Target Start/End: Complemental strand, 40169843 - 40169781
Alignment:
Q  362 attttaggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtccccta 424  Q
    |||||| |||||||| ||||||||||||||||| |||  ||||| ||||||||||| ||||||    
T  40169843 attttatgctaaactgcagttttgaccccctaactttcacaatggtgcgattttggcccccta 40169781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 42177344 - 42177386
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    |||||||||||||||||||||||||||||||| | ||||||||    
T  42177344 gaacttctacggtacactcacaaaatgaggtgtatcggtactc 42177386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 367
Target Start/End: Complemental strand, 8256845 - 8256788
Alignment:
Q  310 aacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    ||||| ||||||||||||||||||||||||| | ||||||||||  || |||||||||    
T  8256845 aacttttacggtacactcacaaaatgaggtgtatcggtactcctccttcttaatttta 8256788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 367
Target Start/End: Complemental strand, 8270263 - 8270206
Alignment:
Q  310 aacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    ||||| ||||||||||||||||||||||||| | ||||||||||  || |||||||||    
T  8270263 aacttttacggtacactcacaaaatgaggtgtatcggtactcctccttcttaatttta 8270206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 350
Target Start/End: Complemental strand, 29582370 - 29582329
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtact 350  Q
    |||||||||||||||||||||||| ||||||| |||||||||    
T  29582370 gaacttctacggtacactcacaaattgaggtgtaccggtact 29582329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 350
Target Start/End: Original strand, 36631038 - 36631079
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtact 350  Q
    |||||||||||||||||||||||||||||||| | |||||||    
T  36631038 gaacttctacggtacactcacaaaatgaggtgtaacggtact 36631079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 367
Target Start/End: Complemental strand, 50733261 - 50733204
Alignment:
Q  310 aacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||| |||||||||||||||||| || || | |||||||||| |||||||||||||    
T  50733261 aacttccacggtacactcacaaaataagatgtatcggtactcctgttttttaatttta 50733204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 340
Target Start/End: Complemental strand, 50608090 - 50608058
Alignment:
Q  308 agaacttctacggtacactcacaaaatgaggtg 340  Q
    |||||||||||||||||||||||||||||||||    
T  50608090 agaacttctacggtacactcacaaaatgaggtg 50608058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 367
Target Start/End: Complemental strand, 56303244 - 56303184
Alignment:
Q  307 gagaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    ||||||||||| |||||||||| ||| ||||||| ||||||||||||  ||| ||||||||    
T  56303244 gagaacttctatggtacactcataaagtgaggtgtaccggtactcctgctttataatttta 56303184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 367
Target Start/End: Complemental strand, 4720875 - 4720817
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||| ||||||||||||| ||||||||||| | ||||||||||  || |||||||||    
T  4720875 gaacttatacggtacactcataaaatgaggtgtatcggtactcctgcttcttaatttta 4720817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 23058767 - 23058809
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    |||||||||||||||||||||||| |||| || ||||||||||    
T  23058767 gaacttctacggtacactcacaaagtgagatgtaccggtactc 23058809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 30348165 - 30348207
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    ||||| |||||||||| ||||||||||||||| ||||||||||    
T  30348165 gaactactacggtacaatcacaaaatgaggtgtaccggtactc 30348207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 351
Target Start/End: Complemental strand, 34829123 - 34829085
Alignment:
Q  313 ttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    ||||||||||||||||||| |||||||| ||||||||||    
T  34829123 ttctacggtacactcacaagatgaggtgtaccggtactc 34829085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 351
Target Start/End: Complemental strand, 43147901 - 43147859
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    ||||||||||||||||||||||| |||||||  ||||||||||    
T  43147901 gaacttctacggtacactcacaagatgaggtataccggtactc 43147859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 19527128 - 19527083
Alignment:
Q  309 gaacttctacggtacac-tcacaaaatgaggtgcaccggtactcct 353  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  19527128 gaacttctacggtacacctcacaaattgaggtgtaccggtactcct 19527083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 416
Target Start/End: Complemental strand, 31435910 - 31435862
Alignment:
Q  367 aggctaaactacagttttgaccccctaagtttgccaatgttgcgattttg 416  Q
    ||||||||||||||||||| |||  || ||||||||||||||||||||||    
T  31435910 aggctaaactacagttttggccct-tatgtttgccaatgttgcgattttg 31435862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 39103539 - 39103584
Alignment:
Q  309 gaacttctacggtacac-tcacaaaatgaggtgcaccggtactcct 353  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  39103539 gaacttctacggtacacctcacaaattgaggtgtaccggtactcct 39103584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 351
Target Start/End: Original strand, 52607571 - 52607612
Alignment:
Q  310 aacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    ||||||||||||||| |||||| |||||||| ||||||||||    
T  52607571 aacttctacggtacattcacaagatgaggtgtaccggtactc 52607612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 424
Target Start/End: Original strand, 55780382 - 55780443
Alignment:
Q  363 ttttaggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtccccta 424  Q
    |||||||||||||| || ||||  |||| ||||||| | |||||||||||||||| ||||||    
T  55780382 ttttaggctaaacttcatttttcgccccttaagttttcaaatgttgcgattttggcccccta 55780443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 424
Target Start/End: Original strand, 55844562 - 55844623
Alignment:
Q  363 ttttaggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtccccta 424  Q
    |||||||||||||| || ||||  |||| ||||||| | |||||||||||||||| ||||||    
T  55844562 ttttaggctaaacttcatttttcgccccttaagttttcaaatgttgcgattttggcccccta 55844623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 33491164 - 33491208
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 353  Q
    |||||||||||||||| ||||||| |||| || ||||||||||||    
T  33491164 gaacttctacggtacattcacaaagtgagatgtaccggtactcct 33491208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 50)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 363 - 454
Target Start/End: Original strand, 32829735 - 32829826
Alignment:
Q  363 ttttaggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaatnnnnnnnntgaatattttgccccctatg 454  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||        ||||||||||||||||||||    
T  32829735 tttttggctaaactacagttttgaccccctaagtttgccaattttgcgattttggccccctaataaaaaaaatgaatattttgccccctatg 32829826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 368 - 426
Target Start/End: Complemental strand, 10584140 - 10584082
Alignment:
Q  368 ggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaat 426  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  10584140 ggctaaactacagttttgatcccctaagtttgccaatgttgcgattttggccccctaat 10584082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 361 - 426
Target Start/End: Complemental strand, 51220667 - 51220602
Alignment:
Q  361 aattttaggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaat 426  Q
    ||||| |||||||||||||||||||||||| |||||||| ||||||||||||||| | ||||||||    
T  51220667 aatttaaggctaaactacagttttgaccccttaagtttgtcaatgttgcgattttagccccctaat 51220602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 368 - 424
Target Start/End: Original strand, 26722533 - 26722589
Alignment:
Q  368 ggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtccccta 424  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||    
T  26722533 ggctaaactacagttttggccccctaagtttaccaatgttgcgattttggcccccta 26722589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 358 - 426
Target Start/End: Original strand, 51219452 - 51219520
Alignment:
Q  358 tttaattttaggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaat 426  Q
    ||||| ||| ||||||||||||||||||||| |||||||||| ||||||||| ||||||| ||||||||    
T  51219452 tttaaattttggctaaactacagttttgacctcctaagtttgtcaatgttgcaattttggccccctaat 51219520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 310 - 353
Target Start/End: Complemental strand, 27045097 - 27045054
Alignment:
Q  310 aacttctacggtacactcacaaaatgaggtgcaccggtactcct 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  27045097 aacttctacggtacactcacaaaatgaggtgcaccggtactcct 27045054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 363 - 426
Target Start/End: Complemental strand, 53157238 - 53157176
Alignment:
Q  363 ttttaggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaat 426  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||| || |||||    
T  53157238 ttttaggctaaactacagttttga-cccctaagtttgccaatgttgcgattctggccctctaat 53157176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 309 - 367
Target Start/End: Original strand, 53289232 - 53289290
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  || |||||||||    
T  53289232 gaacttctacggtacactcacaaaatgaggtgtaccggtactcctgcttcttaatttta 53289290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 367 - 416
Target Start/End: Complemental strand, 32831149 - 32831100
Alignment:
Q  367 aggctaaactacagttttgaccccctaagtttgccaatgttgcgattttg 416  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  32831149 aggctaaactacagttttgaccccctatgtttgtcaatgttgcgattttg 32831100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 364 - 424
Target Start/End: Original strand, 21326316 - 21326376
Alignment:
Q  364 tttaggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtccccta 424  Q
    |||||||||||||||| |||||||||| ||||||| ||||| |||| ||||||||||||||    
T  21326316 tttaggctaaactacacttttgaccccttaagtttaccaatattgcaattttggtccccta 21326376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 367
Target Start/End: Original strand, 46507361 - 46507420
Alignment:
Q  307 gagaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||||||||||||||||||||||||||||||| | ||||||| || |||||||||||||    
T  46507361 gagaacttctacggtacactcacaaaatgaggtgtatcggtact-ctgttttttaatttta 46507420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 313 - 367
Target Start/End: Original strand, 4817082 - 4817136
Alignment:
Q  313 ttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||||||||||||||||||||||||| |||||||||| || ||| ||||||||    
T  4817082 ttctacggtacactcacaaaatgaggtgtaccggtactcttactttataatttta 4817136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 309 - 367
Target Start/End: Original strand, 29388697 - 29388755
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||||||||||| ||||||||||||||||| ||| ||||||||| || |||||||||    
T  29388697 gaacttctacggtatactcacaaaatgaggtgtaccagtactcctacttcttaatttta 29388755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 37520704 - 37520746
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  37520704 gaacttctacggtacactcacaaaatgaggtgtaccggtactc 37520746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 309 - 367
Target Start/End: Original strand, 39987353 - 39987411
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||||||||| ||||||| ||||||||||| |||||||||||| ||| |||||||||    
T  39987353 gaacttctacgggacactcataaaatgaggtgtaccggtactcctgtttcttaatttta 39987411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 309 - 351
Target Start/End: Complemental strand, 44653575 - 44653533
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  44653575 gaacttctacggtacactcacaaaatgaggtgtaccggtactc 44653533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 367 - 424
Target Start/End: Complemental strand, 26723963 - 26723906
Alignment:
Q  367 aggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtccccta 424  Q
    ||||||||||||||||||| |||||||||||| | |||||||| ||||||| ||||||    
T  26723963 aggctaaactacagttttggccccctaagtttactaatgttgcaattttggcccccta 26723906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 47746236 - 47746191
Alignment:
Q  306 agagaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||    
T  47746236 agagaacttctacggtacactcacaaaatgaggtgtaccgatactc 47746191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 1129131 - 1129175
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 353  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  1129131 gaacttctacggtacactcacaaagtgaggtgtaccggtactcct 1129175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 35501194 - 35501150
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 353  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||    
T  35501194 gaacttctatggtacactcacaaaatgaggtgtaccggtactcct 35501150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 40478162 - 40478118
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 353  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  40478162 gaacttctacggtacactcacaaagtgaggtgtaccggtactcct 40478118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 44379416 - 44379460
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 353  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  44379416 gaacttctacggtacactcacaaagtgaggtgtaccggtactcct 44379460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 353
Target Start/End: Complemental strand, 23456861 - 23456818
Alignment:
Q  310 aacttctacggtacactcacaaaatgaggtgcaccggtactcct 353  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||    
T  23456861 aacttctacggtacactcacaaagtgaggtgtaccggtactcct 23456818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 26884975 - 26885017
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    ||||||||||||||||||||||| |||||||| ||||||||||    
T  26884975 gaacttctacggtacactcacaagatgaggtgtaccggtactc 26885017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 367
Target Start/End: Complemental strand, 41982389 - 41982331
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||||||||||||||||||||| ||||||| | |||||||| || ||| ||||||||    
T  41982389 gaacttctacggtacactcacaaagtgaggtgtatcggtactcttactttataatttta 41982331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 42621850 - 42621892
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    |||||||||||||||||||||||||||||||| ||| ||||||    
T  42621850 gaacttctacggtacactcacaaaatgaggtgtaccagtactc 42621892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 367
Target Start/End: Complemental strand, 54428899 - 54428841
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||||||| ||||||||| ||||||||||| |||| ||||||| ||| |||||||||    
T  54428899 gaacttctactgtacactcataaaatgaggtgtaccgatactcctgtttcttaatttta 54428841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 1021378 - 1021334
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 353  Q
    ||||||||||| |||||||||||||||||||| | ||||||||||    
T  1021378 gaacttctacgatacactcacaaaatgaggtgtatcggtactcct 1021334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 353
Target Start/End: Complemental strand, 8966345 - 8966291
Alignment:
Q  299 attttcaagagaacttctacggtacactcacaaaatgaggtgcaccggtactcct 353  Q
    ||||| ||| |||||||||||||||||||| ||| | ||||| ||||||||||||    
T  8966345 atttttaagggaacttctacggtacactcataaattaaggtgtaccggtactcct 8966291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 351
Target Start/End: Complemental strand, 15997225 - 15997183
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    |||||||||||||||||||| || |||||||| ||||||||||    
T  15997225 gaacttctacggtacactcataagatgaggtgtaccggtactc 15997183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 367
Target Start/End: Complemental strand, 26850330 - 26850272
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    ||||||||| |||||||| | ||||||||||| | ||||||||||| || |||||||||    
T  26850330 gaacttctatggtacacttataaaatgaggtgtatcggtactcctacttcttaatttta 26850272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 351
Target Start/End: Complemental strand, 29806413 - 29806371
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    ||||||||||||||||||| |||| ||||||| ||||||||||    
T  29806413 gaacttctacggtacactcgcaaattgaggtgtaccggtactc 29806371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 367
Target Start/End: Complemental strand, 30349408 - 30349350
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||||||||||||||||||||||||| ||| | ||||||| ||  || |||||||||    
T  30349408 gaacttctacggtacactcacaaaatgaagtgtatcggtacttctgcttcttaatttta 30349350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 351
Target Start/End: Complemental strand, 32637039 - 32636989
Alignment:
Q  301 tttcaagagaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    ||||||| ||| |||||||||||||||||||| ||||||| |||| |||||    
T  32637039 tttcaagggaatttctacggtacactcacaaagtgaggtgtaccgatactc 32636989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 351
Target Start/End: Complemental strand, 42479089 - 42479047
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    |||||||||||||||| ||||||||| ||||| ||||||||||    
T  42479089 gaacttctacggtacattcacaaaataaggtgtaccggtactc 42479047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 351
Target Start/End: Original strand, 48795434 - 48795484
Alignment:
Q  302 ttcaagagaacttctacggtaca-ctcacaaaatgaggtgcaccggtactc 351  Q
    |||||| |||||||||||||||| |||||||| ||||||| ||||||||||    
T  48795434 ttcaagggaacttctacggtacacctcacaaattgaggtgtaccggtactc 48795484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 424
Target Start/End: Complemental strand, 54539558 - 54539500
Alignment:
Q  366 taggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtccccta 424  Q
    ||||||||||| ||||||| ||||| ||| |||| ||||| ||||||||||| ||||||    
T  54539558 taggctaaactgcagttttaaccccttaactttgacaatggtgcgattttggcccccta 54539500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 367
Target Start/End: Original strand, 7352169 - 7352226
Alignment:
Q  310 aacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    ||||||| |||||||||||||||||||| || | ||||||||||  || |||||||||    
T  7352169 aacttctgcggtacactcacaaaatgagatgtatcggtactcctgcttcttaatttta 7352226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 351
Target Start/End: Complemental strand, 9507302 - 9507265
Alignment:
Q  314 tctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  9507302 tctacggtacactcacaagatgaggtgtaccggtactc 9507265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 351
Target Start/End: Complemental strand, 9515277 - 9515240
Alignment:
Q  314 tctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  9515277 tctacggtacactcacaagatgaggtgtaccggtactc 9515240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 399
Target Start/End: Original strand, 10583829 - 10583862
Alignment:
Q  366 taggctaaactacagttttgaccccctaagtttg 399  Q
    ||||||||||||||||||| ||||||||||||||    
T  10583829 taggctaaactacagttttaaccccctaagtttg 10583862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 354
Target Start/End: Complemental strand, 19547893 - 19547848
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactccta 354  Q
    ||||||||||||||||| |||||| | ||||| |||||||||||||    
T  19547893 gaacttctacggtacacccacaaattaaggtgtaccggtactccta 19547848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 29698324 - 29698369
Alignment:
Q  309 gaacttctacggtacac-tcacaaaatgaggtgcaccggtactcct 353  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  29698324 gaacttctacggtacacctcacaaattgaggtgtaccggtactcct 29698369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 32121901 - 32121946
Alignment:
Q  309 gaacttctacggtacac-tcacaaaatgaggtgcaccggtactcct 353  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  32121901 gaacttctacggtacacctcacaaagtgaggtgtaccggtactcct 32121946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 350
Target Start/End: Complemental strand, 36220810 - 36220769
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtact 350  Q
    |||||||||||||||||||||||| ||||||| |||| ||||    
T  36220810 gaacttctacggtacactcacaaagtgaggtgtaccgatact 36220769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 351
Target Start/End: Original strand, 37127807 - 37127848
Alignment:
Q  310 aacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    ||||||||||||||||||| ||||||||||| ||| ||||||    
T  37127807 aacttctacggtacactcataaaatgaggtgtaccagtactc 37127848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 340
Target Start/End: Complemental strand, 41217461 - 41217428
Alignment:
Q  307 gagaacttctacggtacactcacaaaatgaggtg 340  Q
    |||||||||||||||||||||||||||| |||||    
T  41217461 gagaacttctacggtacactcacaaaataaggtg 41217428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 25834634 - 25834590
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 353  Q
    |||||||||||||||||||| ||| |||| || ||||||||||||    
T  25834634 gaacttctacggtacactcataaagtgagatgtaccggtactcct 25834590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 40474239 - 40474195
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 353  Q
    ||||||||| |||||||||| ||| ||||||| ||||||||||||    
T  40474239 gaacttctatggtacactcataaagtgaggtgtaccggtactcct 40474195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 51344776 - 51344732
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 353  Q
    |||||||||||||||||| ||||| | ||||| ||||||||||||    
T  51344776 gaacttctacggtacacttacaaagtaaggtgtaccggtactcct 51344732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 365 - 426
Target Start/End: Original strand, 27552449 - 27552510
Alignment:
Q  365 ttaggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaat 426  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||    
T  27552449 ttaggctaaactacagttttgaccccctaaatttgccaatgttgcgattttggctccctaat 27552510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 309 - 364
Target Start/End: Complemental strand, 9589518 - 9589463
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatt 364  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| || ||||||    
T  9589518 gaacttctacggtacactcacaaaatgaggtgtaccggtactcctacttcttaatt 9589463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 363 - 426
Target Start/End: Complemental strand, 27553870 - 27553807
Alignment:
Q  363 ttttaggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaat 426  Q
    |||| ||||||||||||||||| ||||||||||||||| |||||||||||||||| | ||||||    
T  27553870 tttttggctaaactacagttttaaccccctaagtttgctaatgttgcgattttggcctcctaat 27553807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 309 - 367
Target Start/End: Original strand, 7673297 - 7673355
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  || |||||||||    
T  7673297 gaacttctacggtacactcacaaaatgaggtgtaccggtactcctgcttcttaatttta 7673355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 309 - 367
Target Start/End: Original strand, 25331457 - 25331515
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  || |||||||||    
T  25331457 gaacttctacggtacactcacaaaatgaggtgtaccggtactcctgcttcttaatttta 25331515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 309 - 367
Target Start/End: Original strand, 32602305 - 32602363
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  || |||||||||    
T  32602305 gaacttctacggtacactcacaaaatgaggtgtaccggtactcctgcttcttaatttta 32602363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 359 - 415
Target Start/End: Original strand, 10851904 - 10851960
Alignment:
Q  359 ttaattttaggctaaactacagttttgaccccctaagtttgccaatgttgcgatttt 415  Q
    |||||| ||||||||||||||||||||||||||||| |||  |||||||||||||||    
T  10851904 ttaattctaggctaaactacagttttgaccccctaactttatcaatgttgcgatttt 10851960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 364
Target Start/End: Original strand, 21404200 - 21404255
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatt 364  Q
    |||||||||||||||||||||||||||||||| |||| |||||||| || ||||||    
T  21404200 gaacttctacggtacactcacaaaatgaggtgtaccgatactcctacttcttaatt 21404255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 309 - 367
Target Start/End: Complemental strand, 40495851 - 40495793
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||||||| |||||||||||||||||||||||||| |||| || ||| |||||||||    
T  40495851 gaacttctactgtacactcacaaaatgaggtgcaccgatacttctgtttcttaatttta 40495793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 367
Target Start/End: Original strand, 17451285 - 17451342
Alignment:
Q  310 aacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||  || |||||||||    
T  17451285 aacttctacggtacactcacaaaataaggtgtaccggtactcctgcttcttaatttta 17451342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 426
Target Start/End: Original strand, 12812834 - 12812894
Alignment:
Q  366 taggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaat 426  Q
    |||||||| |||||||||||||| | ||||||||| ||||||| |||||||| ||||||||    
T  12812834 taggctaagctacagttttgacctcttaagtttgctaatgttgagattttggccccctaat 12812894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 351
Target Start/End: Complemental strand, 45157920 - 45157876
Alignment:
Q  307 gagaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    |||||||||||||||||||||||||||||||||| |||| |||||    
T  45157920 gagaacttctacggtacactcacaaaatgaggtgtaccgatactc 45157876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 351
Target Start/End: Complemental strand, 6945750 - 6945704
Alignment:
Q  305 aagagaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    |||||||||||||||||||||||| || |||||||| ||||||||||    
T  6945750 aagagaacttctacggtacactcataagatgaggtgtaccggtactc 6945704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 367
Target Start/End: Original strand, 9122158 - 9122216
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||||||||||||||||||||||| ||||| ||||||||| ||  || |||||||||    
T  9122158 gaacttctacggtacactcacaaaataaggtgtaccggtacttctgcttcttaatttta 9122216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 32401081 - 32401123
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    ||||||||||||||||||||||| |||||||| ||||||||||    
T  32401081 gaacttctacggtacactcacaagatgaggtgtaccggtactc 32401123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 424
Target Start/End: Complemental strand, 45413537 - 45413479
Alignment:
Q  366 taggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtccccta 424  Q
    ||||||||||| ||||||||||||||||| |||  ||||| ||||||||||| ||||||    
T  45413537 taggctaaactgcagttttgaccccctaactttcacaatggtgcgattttggcccccta 45413479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 424
Target Start/End: Original strand, 28847336 - 28847389
Alignment:
Q  371 taaactacagttttgaccccctaagtttgccaatgttgcgattttggtccccta 424  Q
    |||||| ||||||||||||||||| |||  ||||||||| ||||||||||||||    
T  28847336 taaactgcagttttgaccccctaattttcacaatgttgcaattttggtccccta 28847389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 363 - 416
Target Start/End: Complemental strand, 28851735 - 28851682
Alignment:
Q  363 ttttaggctaaactacagttttgaccccctaagtttgccaatgttgcgattttg 416  Q
    |||| ||||||||| ||||||||||||||||| |||  ||||||||||||||||    
T  28851735 tttttggctaaactgcagttttgaccccctaactttcacaatgttgcgattttg 28851682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 351
Target Start/End: Original strand, 1580253 - 1580291
Alignment:
Q  313 ttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  1580253 ttctacggtacactcacaaagtgaggtgtaccggtactc 1580291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 340
Target Start/End: Original strand, 36754339 - 36754369
Alignment:
Q  310 aacttctacggtacactcacaaaatgaggtg 340  Q
    |||||||||||||||||||||||||||||||    
T  36754339 aacttctacggtacactcacaaaatgaggtg 36754369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 367
Target Start/End: Original strand, 43439997 - 43440055
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||||||||| ||||||||||||||||||| |||| |||| ||  || |||||||||    
T  43439997 gaacttctacggcacactcacaaaatgaggtgtaccgatacttctgcttcttaatttta 43440055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 8333893 - 8333938
Alignment:
Q  309 gaacttctacggtacac-tcacaaaatgaggtgcaccggtactcct 353  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  8333893 gaacttctacggtacacctcacaaattgaggtgtaccggtactcct 8333938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 416
Target Start/End: Complemental strand, 10853200 - 10853155
Alignment:
Q  371 taaactacagttttgaccccctaagtttgccaatgttgcgattttg 416  Q
    |||||||||||||||||||| ||| |||  ||||||||||||||||    
T  10853200 taaactacagttttgaccccttaactttatcaatgttgcgattttg 10853155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 41555433 - 41555478
Alignment:
Q  309 gaacttctacggtacac-tcacaaaatgaggtgcaccggtactcct 353  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  41555433 gaacttctacggtacacctcacaaattgaggtgtaccggtactcct 41555478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 416
Target Start/End: Original strand, 45412334 - 45412383
Alignment:
Q  367 aggctaaactacagttttgaccccctaagtttgccaatgttgcgattttg 416  Q
    |||||||||| ||||||||||||||||| |||  ||||| ||||||||||    
T  45412334 aggctaaactgcagttttgaccccctaactttcacaatggtgcgattttg 45412383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 35895313 - 35895357
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 353  Q
    |||||| ||||||||||||| ||| ||||||| ||||||||||||    
T  35895313 gaacttttacggtacactcataaagtgaggtgtaccggtactcct 35895357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 367 - 426
Target Start/End: Complemental strand, 124588 - 124529
Alignment:
Q  367 aggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaat 426  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||    
T  124588 aggctaaactacagttttgacctcttaagtttgccaatgttgcgattttggccccctaat 124529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 368 - 454
Target Start/End: Complemental strand, 5504194 - 5504108
Alignment:
Q  368 ggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaatnnnnnnnntgaatattttgccccctatg 454  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||  ||||||||        ||||||||||||||||||||    
T  5504194 ggctaaactacagttttgacctcttaagtttgccaatgttgcgattttgaccccctaataaaaaaaatgaatattttgccccctatg 5504108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 306 - 364
Target Start/End: Original strand, 9604430 - 9604488
Alignment:
Q  306 agagaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatt 364  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||    
T  9604430 agagaacttctacggtacactcacaaaatgaggtgtaccggtactcctacttcttaatt 9604488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 367 - 454
Target Start/End: Original strand, 5502917 - 5503003
Alignment:
Q  367 aggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaatnnnnnnnntgaatattttgccccctatg 454  Q
    |||||||||||||||||||||||  |||||||||||||||||| ||||||| ||||||||        ||||||||||||||||||||    
T  5502917 aggctaaactacagttttgaccct-taagtttgccaatgttgcaattttggccccctaataaaaaaaatgaatattttgccccctatg 5503003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 363 - 453
Target Start/End: Original strand, 121344 - 121434
Alignment:
Q  363 ttttaggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaatnnnnnnnntgaatattttgccccctat 453  Q
    ||||||||||||||||||||||||| | |||| |||||||||||||| ||||||  ||||||||        |||||||||||||||||||    
T  121344 ttttaggctaaactacagttttgacactctaaatttgccaatgttgcaattttgaccccctaataaaaaaaatgaatattttgccccctat 121434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 417
Target Start/End: Original strand, 3597321 - 3597372
Alignment:
Q  366 taggctaaactacagttttgaccccctaagtttgccaatgttgcgattttgg 417  Q
    |||||||||||||||||||| |||||||||||| | ||||||||||||||||    
T  3597321 taggctaaactacagttttggccccctaagtttactaatgttgcgattttgg 3597372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 309 - 351
Target Start/End: Complemental strand, 702354 - 702312
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  702354 gaacttctacggtacactcacaaaatgaggtgtaccggtactc 702312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 362 - 424
Target Start/End: Complemental strand, 3598986 - 3598924
Alignment:
Q  362 attttaggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtccccta 424  Q
    ||||| ||||||||||||||||||  ||||||| ||| |||||||||||||||||| ||||||    
T  3598986 atttttggctaaactacagttttggtcccctaaatttaccaatgttgcgattttggcccccta 3598924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 309 - 367
Target Start/End: Original strand, 14434820 - 14434878
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||||||| ||||||||||||||||||||| | |||||||||| ||| |||||||||    
T  14434820 gaacttctactgtacactcacaaaatgaggtgtatcggtactcctgtttcttaatttta 14434878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 367
Target Start/End: Complemental strand, 40803724 - 40803667
Alignment:
Q  310 aacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||||||||| |||||||||||||||||| ||||||||||||  || |||||||||    
T  40803724 aacttctacggtgcactcacaaaatgaggtgtaccggtactcctgcttcttaatttta 40803667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 349
Target Start/End: Complemental strand, 33210773 - 33210734
Alignment:
Q  310 aacttctacggtacactcacaaaatgaggtgcaccggtac 349  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  33210773 aacttctacggtacactcacaaaatgaggtgtaccggtac 33210734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 351
Target Start/End: Complemental strand, 2852102 - 2852060
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    |||||||||||||||||||||||||||||||| | ||||||||    
T  2852102 gaacttctacggtacactcacaaaatgaggtgtatcggtactc 2852060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 351
Target Start/End: Complemental strand, 6260422 - 6260380
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    |||||||||||||||||||| ||||||||||| ||||||||||    
T  6260422 gaacttctacggtacactcataaaatgaggtgtaccggtactc 6260380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 364
Target Start/End: Original strand, 9910042 - 9910096
Alignment:
Q  310 aacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatt 364  Q
    |||||||| |||||||||||||||||||||| |||| |||||||  |||||||||    
T  9910042 aacttctatggtacactcacaaaatgaggtgtaccgatactccttctttttaatt 9910096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 351
Target Start/End: Complemental strand, 13127385 - 13127343
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    |||||||||||||||| ||||||||||||||| ||||||||||    
T  13127385 gaacttctacggtacattcacaaaatgaggtgtaccggtactc 13127343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 426
Target Start/End: Complemental strand, 14190549 - 14190487
Alignment:
Q  364 tttaggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaat 426  Q
    ||||||||||||| ||||||||||||||||| |||   || | ||||||||||||||||||||    
T  14190549 tttaggctaaactgcagttttgaccccctaactttcataaaggtgcgattttggtcccctaat 14190487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 367
Target Start/End: Complemental strand, 33678562 - 33678504
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    ||||||||| |||||||||||||||||||||| | ||||||||||  || |||||||||    
T  33678562 gaacttctatggtacactcacaaaatgaggtgtatcggtactcctgcttcttaatttta 33678504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 36427907 - 36427949
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  36427907 gaacttctacggtacactcacaaagtgaggtgtaccggtactc 36427949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 39816507 - 39816549
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  39816507 gaacttctacggtacactcacaaagtgaggtgtaccggtactc 39816549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 318 - 367
Target Start/End: Original strand, 30753458 - 30753507
Alignment:
Q  318 cggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    ||||||||||||||||||||||| |||||||||| || ||| ||||||||    
T  30753458 cggtacactcacaaaatgaggtgtaccggtactcttactttataatttta 30753507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 351
Target Start/End: Original strand, 479674 - 479718
Alignment:
Q  307 gagaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    |||||||||||||||||||||||||| ||||||| || |||||||    
T  479674 gagaacttctacggtacactcacaaagtgaggtgtactggtactc 479718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 426
Target Start/End: Original strand, 24242011 - 24242075
Alignment:
Q  362 attttaggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaat 426  Q
    ||||||||||||||| ||||||||||||||||| |||  ||| | ||||||||||  ||||||||    
T  24242011 attttaggctaaactgcagttttgaccccctaactttcacaaaggtgcgattttgaccccctaat 24242075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 353
Target Start/End: Complemental strand, 13119202 - 13119159
Alignment:
Q  310 aacttctacggtacactcacaaaatgaggtgcaccggtactcct 353  Q
    ||||||||||||||||| ||||| ||||||| ||||||||||||    
T  13119202 aacttctacggtacacttacaaagtgaggtgtaccggtactcct 13119159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 340
Target Start/End: Original strand, 42597476 - 42597507
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtg 340  Q
    ||||||||||||||||||||||||||||||||    
T  42597476 gaacttctacggtacactcacaaaatgaggtg 42597507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 426
Target Start/End: Original strand, 14189664 - 14189722
Alignment:
Q  368 ggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaat 426  Q
    ||||||||| ||||||||||||||||| |||   || | ||||||||||||||||||||    
T  14189664 ggctaaactgcagttttgaccccctaactttcataaaggtgcgattttggtcccctaat 14189722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 367
Target Start/End: Original strand, 28318349 - 28318407
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||||||||||||||| | ||||||||||| | ||||||||||  || |||||||||    
T  28318349 gaacttctacggtacacttataaaatgaggtgtatcggtactcctgcttcttaatttta 28318407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 351
Target Start/End: Complemental strand, 29960271 - 29960229
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    |||||| ||||||||||||| ||||||||||| ||||||||||    
T  29960271 gaacttttacggtacactcataaaatgaggtgtaccggtactc 29960229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 40563117 - 40563159
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    |||||||||||||||||||| ||||||||||| |||| |||||    
T  40563117 gaacttctacggtacactcataaaatgaggtgtaccgatactc 40563159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 351
Target Start/End: Original strand, 42486611 - 42486649
Alignment:
Q  313 ttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  42486611 ttctacggtacactcacaaagtgaggtgtaccggtactc 42486649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 358
Target Start/End: Original strand, 5140672 - 5140721
Alignment:
Q  310 aacttctacggtacac-tcacaaaatgaggtgcaccggtactcctatttt 358  Q
    |||||||||||||||| ||||||| ||||||| |||||||||||| ||||    
T  5140672 aacttctacggtacacctcacaaattgaggtgtaccggtactcctgtttt 5140721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 5512684 - 5512729
Alignment:
Q  309 gaacttctacggtacac-tcacaaaatgaggtgcaccggtactcct 353  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  5512684 gaacttctacggtacacctcacaaattgaggtgtaccggtactcct 5512729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 417
Target Start/End: Complemental strand, 17415747 - 17415698
Alignment:
Q  368 ggctaaactacagttttgaccccctaagtttgccaatgttgcgattttgg 417  Q
    ||||||||| ||||||||||||||||| |||  ||||| |||||||||||    
T  17415747 ggctaaactgcagttttgaccccctaactttcacaatggtgcgattttgg 17415698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 39939035 - 39939080
Alignment:
Q  309 gaacttctacggtacac-tcacaaaatgaggtgcaccggtactcct 353  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  39939035 gaacttctacggtacacctcacaaattgaggtgtaccggtactcct 39939080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 424
Target Start/End: Original strand, 17414544 - 17414600
Alignment:
Q  368 ggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtccccta 424  Q
    ||||||||| |||||||||||| |||| |||  ||||| ||||||||||| ||||||    
T  17414544 ggctaaactgcagttttgaccctctaacttttacaatggtgcgattttggcccccta 17414600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 357
Target Start/End: Complemental strand, 28332526 - 28332478
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattt 357  Q
    ||||||||||||||||||  |||| | ||||| ||||||||||||||||    
T  28332526 gaacttctacggtacacttgcaaattaaggtgtaccggtactcctattt 28332478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 30753427 - 30753463
Alignment:
Q  313 ttctacggtacactcacaaaatgaggtgcaccggtac 349  Q
    ||||||||||||||||||||||||| || ||||||||    
T  30753427 ttctacggtacactcacaaaatgagatgtaccggtac 30753463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 46)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 368 - 426
Target Start/End: Original strand, 46312065 - 46312123
Alignment:
Q  368 ggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaat 426  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||    
T  46312065 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctaat 46312123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 363 - 426
Target Start/End: Complemental strand, 46525905 - 46525842
Alignment:
Q  363 ttttaggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaat 426  Q
    |||| |||||| ||||||||||| ||||||||||||||||||||||||||||||| | ||||||    
T  46525905 tttttggctaatctacagttttggccccctaagtttgccaatgttgcgattttggcctcctaat 46525842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 368 - 426
Target Start/End: Original strand, 2999491 - 2999549
Alignment:
Q  368 ggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaat 426  Q
    |||||||||||||||||||||| |||| |||| |||||||||||||||| |||||||||    
T  2999491 ggctaaactacagttttgaccctctaactttgtcaatgttgcgattttgatcccctaat 2999549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 370 - 423
Target Start/End: Original strand, 46524542 - 46524595
Alignment:
Q  370 ctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccct 423  Q
    |||||||||||||||| |||||||||||| |||||||||| |||||||||||||    
T  46524542 ctaaactacagttttggccccctaagtttaccaatgttgcaattttggtcccct 46524595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 309 - 367
Target Start/End: Original strand, 2249589 - 2249647
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||||| ||||||||||||||||||||||| | |||||||||| ||| |||||||||    
T  2249589 gaacttctgcggtacactcacaaaatgaggtgtatcggtactcctgtttcttaatttta 2249647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 364 - 426
Target Start/End: Complemental strand, 3000275 - 3000213
Alignment:
Q  364 tttaggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaat 426  Q
    ||||||||||||||||||||||||||| ||| ||||  ||||||||||||||| ||| |||||    
T  3000275 tttaggctaaactacagttttgaccccttaattttgttaatgttgcgattttgatcctctaat 3000213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 313 - 367
Target Start/End: Complemental strand, 6966309 - 6966255
Alignment:
Q  313 ttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||||||||||||||||||||||||| ||||||||||||  || |||||||||    
T  6966309 ttctacggtacactcacaaaatgaggtgtaccggtactcctcattcttaatttta 6966255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 12105162 - 12105204
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  12105162 gaacttctacggtacactcacaaaatgaggtgtaccggtactc 12105204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 309 - 367
Target Start/End: Original strand, 13202938 - 13202996
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||||||| ||||||||| ||||||||||| |||||||||||| ||| |||||||||    
T  13202938 gaacttctactgtacactcagaaaatgaggtgtaccggtactcctgtttcttaatttta 13202996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 309 - 367
Target Start/End: Original strand, 31821573 - 31821631
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||||||||||||||||||||||||||||| | ||||||||||  || |||||||||    
T  31821573 gaacttctacggtacactcacaaaatgaggtgtagcggtactcctgcttcttaatttta 31821631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 309 - 367
Target Start/End: Original strand, 45622482 - 45622540
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||| |||| |||||||||||||||||||| ||||||||||||| || |||||||||    
T  45622482 gaacttatacgttacactcacaaaatgaggtgtaccggtactcctacttcttaatttta 45622540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 309 - 367
Target Start/End: Complemental strand, 46641921 - 46641863
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||  || |||||||||    
T  46641921 gaacttctacggtacactcgcaaaatgaggtgtaccggtactcctgcttcttaatttta 46641863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 309 - 367
Target Start/End: Complemental strand, 47544701 - 47544643
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||  || |||||||||    
T  47544701 gaacttctatggtacactcacaaaatgaggtgtaccggtactcctgcttcttaatttta 47544643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 308 - 353
Target Start/End: Original strand, 34038162 - 34038207
Alignment:
Q  308 agaacttctacggtacactcacaaaatgaggtgcaccggtactcct 353  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||    
T  34038162 agaacttctacggtacactcacaaagtgaggtgtaccggtactcct 34038207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 367
Target Start/End: Complemental strand, 38718135 - 38718078
Alignment:
Q  310 aacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    ||||||||||||||||||||||||||||||| | ||||||||||  || |||||||||    
T  38718135 aacttctacggtacactcacaaaatgaggtgtatcggtactcctccttattaatttta 38718078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 367 - 415
Target Start/End: Complemental strand, 14512717 - 14512669
Alignment:
Q  367 aggctaaactacagttttgaccccctaagtttgccaatgttgcgatttt 415  Q
    ||||||||||||||||||| |||||||||||| | ||||||||||||||    
T  14512717 aggctaaactacagttttggccccctaagtttactaatgttgcgatttt 14512669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 300 - 367
Target Start/End: Complemental strand, 44264070 - 44264003
Alignment:
Q  300 ttttcaagagaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||| ||| |||| ||||||||||||||||||| ||||||| |||||||||||| |||  ||||||||    
T  44264070 tttttaagggaacatctacggtacactcacaaagtgaggtgtaccggtactcctgtttcataatttta 44264003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 353
Target Start/End: Complemental strand, 48760467 - 48760424
Alignment:
Q  310 aacttctacggtacactcacaaaatgaggtgcaccggtactcct 353  Q
    ||||||||||||||||||||||||||||||  ||||||||||||    
T  48760467 aacttctacggtacactcacaaaatgaggtataccggtactcct 48760424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 426
Target Start/End: Original strand, 14204833 - 14204895
Alignment:
Q  364 tttaggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaat 426  Q
    |||||||||||||||||||||| |||| || ||||| ||||| ||||||||||| || |||||    
T  14204833 tttaggctaaactacagttttggccccttatgtttgacaatgctgcgattttggccctctaat 14204895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 367
Target Start/End: Original strand, 24003421 - 24003479
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||||||||||||||| |||||||||||||  |||||||||||  || |||||||||    
T  24003421 gaacttctacggtacactaacaaaatgaggtgttccggtactcctgcttcttaatttta 24003479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 426
Target Start/End: Complemental strand, 50380034 - 50379972
Alignment:
Q  364 tttaggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaat 426  Q
    ||||||||||||| ||||||||||||||||| |||   || | ||||||||||||||||||||    
T  50380034 tttaggctaaactgcagttttgaccccctaactttcataaaggtgcgattttggtcccctaat 50379972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 52345601 - 52345643
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  52345601 gaacttctacggtacactcacaaagtgaggtgtaccggtactc 52345643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 350
Target Start/End: Complemental strand, 10408699 - 10408658
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtact 350  Q
    |||||||||||||||||||||||| ||||||| |||||||||    
T  10408699 gaacttctacggtacactcacaaagtgaggtgtaccggtact 10408658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 367
Target Start/End: Original strand, 52861300 - 52861357
Alignment:
Q  310 aacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    ||||| ||||||||||||||||||||||||| ||||||||| ||  || |||||||||    
T  52861300 aacttttacggtacactcacaaaatgaggtgtaccggtacttctgcttcttaatttta 52861357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 38261207 - 38261163
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 353  Q
    |||||||||||||||||||| ||| ||||||| ||||||||||||    
T  38261207 gaacttctacggtacactcataaagtgaggtgtaccggtactcct 38261163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 46362025 - 46362065
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtac 349  Q
    |||||||||||||||| ||||||||||||||| ||||||||    
T  46362025 gaacttctacggtacattcacaaaatgaggtgtaccggtac 46362065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 311 - 351
Target Start/End: Complemental strand, 47693601 - 47693561
Alignment:
Q  311 acttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    ||||||| |||||||||||||||||||||| ||||||||||    
T  47693601 acttctatggtacactcacaaaatgaggtgtaccggtactc 47693561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 353
Target Start/End: Complemental strand, 52180641 - 52180593
Alignment:
Q  305 aagagaacttctacggtacactcacaaaatgaggtgcaccggtactcct 353  Q
    ||||||||||||| |||| ||||||||| ||||||| ||||||||||||    
T  52180641 aagagaacttctatggtatactcacaaagtgaggtgtaccggtactcct 52180593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 367
Target Start/End: Complemental strand, 8396749 - 8396695
Alignment:
Q  313 ttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||||||||||||| ||||||||||| | ||||||||||  || |||||||||    
T  8396749 ttctacggtacactcataaaatgaggtgtatcggtactcctgcttcttaatttta 8396695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 367
Target Start/End: Original strand, 10348029 - 10348087
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||||||||||||||||||||||| | ||| |||| |||||||  || |||||||||    
T  10348029 gaacttctacggtacactcacaaaataaagtgtaccgatactcctgcttcttaatttta 10348087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 25702437 - 25702479
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    |||||||||||||||||||| ||| ||||||| ||||||||||    
T  25702437 gaacttctacggtacactcataaattgaggtgtaccggtactc 25702479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 340
Target Start/End: Complemental strand, 30572708 - 30572674
Alignment:
Q  306 agagaacttctacggtacactcacaaaatgaggtg 340  Q
    ||||||||||||||||||| |||||||||||||||    
T  30572708 agagaacttctacggtacattcacaaaatgaggtg 30572674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 424
Target Start/End: Complemental strand, 46313334 - 46313276
Alignment:
Q  366 taggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtccccta 424  Q
    ||||||||||| ||||||||||||||||| |||  ||| | ||||||||||| ||||||    
T  46313334 taggctaaactgcagttttgaccccctaactttcacaaaggtgcgattttggcccccta 46313276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 350
Target Start/End: Original strand, 35873938 - 35873979
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtact 350  Q
    |||||||||||||||||||||||| |||| || |||||||||    
T  35873938 gaacttctacggtacactcacaaagtgagatgtaccggtact 35873979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 40054992 - 40054947
Alignment:
Q  309 gaacttctacggtacac-tcacaaaatgaggtgcaccggtactcct 353  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  40054992 gaacttctacggtacacctcacaaattgaggtgtaccggtactcct 40054947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 43916348 - 43916393
Alignment:
Q  309 gaacttctacggtacac-tcacaaaatgaggtgcaccggtactcct 353  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  43916348 gaacttctacggtacacctcacaaattgaggtgtaccggtactcct 43916393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 349
Target Start/End: Complemental strand, 46235245 - 46235196
Alignment:
Q  300 ttttcaagagaacttctacggtacactcacaaaatgaggtgcaccggtac 349  Q
    |||| ||| |||||||||||||||||| ||||||||||||| || |||||    
T  46235245 tttttaagggaacttctacggtacacttacaaaatgaggtgtactggtac 46235196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 50631595 - 50631640
Alignment:
Q  309 gaacttctacggtacac-tcacaaaatgaggtgcaccggtactcct 353  Q
    ||||||||||||||||| ||||||| ||||||||||||||| ||||    
T  50631595 gaacttctacggtacacatcacaaattgaggtgcaccggtaatcct 50631640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 350
Target Start/End: Complemental strand, 2247456 - 2247408
Alignment:
Q  302 ttcaagagaacttctacggtacactcacaaaatgaggtgcaccggtact 350  Q
    |||| ||||||||||||||||||| |||||| | ||||| |||||||||    
T  2247456 ttcaggagaacttctacggtacacccacaaattaaggtgtaccggtact 2247408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 6468793 - 6468837
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 353  Q
    |||||||||||||||||||||||||| | | | ||||||||||||    
T  6468793 gaacttctacggtacactcacaaaataaagcgtaccggtactcct 6468837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 9588048 - 9588004
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 353  Q
    |||||||||||||||||||| ||| ||||||  ||||||||||||    
T  9588048 gaacttctacggtacactcataaagtgaggtataccggtactcct 9588004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 24230571 - 24230615
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 353  Q
    |||||||||||||||||||||||| ||||||| |  |||||||||    
T  24230571 gaacttctacggtacactcacaaagtgaggtgtaatggtactcct 24230615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 351
Target Start/End: Complemental strand, 24381726 - 24381682
Alignment:
Q  307 gagaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    ||||||||||||||||||||||||||  || ||| ||||||||||    
T  24381726 gagaacttctacggtacactcacaaagcgaagtgtaccggtactc 24381682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 423
Target Start/End: Complemental strand, 30107100 - 30107064
Alignment:
Q  387 ccccctaagtttgccaatgttgcgattttggtcccct 423  Q
    |||||||||||||| |||||||| |||||||||||||    
T  30107100 ccccctaagtttgcaaatgttgcaattttggtcccct 30107064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 31530309 - 31530353
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 353  Q
    |||||||||| ||||||| ||||||||||||| || |||||||||    
T  31530309 gaacttctaccgtacacttacaaaatgaggtgtactggtactcct 31530353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 48976877 - 48976921
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 353  Q
    |||||||||||| ||||||||||| ||||||| | ||||||||||    
T  48976877 gaacttctacggcacactcacaaagtgaggtgtatcggtactcct 48976921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 362 - 426
Target Start/End: Original strand, 22417652 - 22417716
Alignment:
Q  362 attttaggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaat 426  Q
    ||||| || |||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||    
T  22417652 atttttggttaaactacagttttgaccccctaagtttgctaatgttacgattttggccccctaat 22417716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 309 - 367
Target Start/End: Complemental strand, 23416901 - 23416843
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  || |||||||||    
T  23416901 gaacttctacggtacactcacaaaatgaggtgtaccggtactcctgcttcttaatttta 23416843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 366 - 426
Target Start/End: Complemental strand, 22418997 - 22418937
Alignment:
Q  366 taggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaat 426  Q
    ||||||||||||| |||||| ||||||||||||| ||||||| ||||||| ||||||||||    
T  22418997 taggctaaactacggttttggccccctaagtttgtcaatgttacgatttttgtcccctaat 22418937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 4509833 - 4509789
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 353  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  4509833 gaacttctacggtacactcacaaagtgaggtgtaccggtactcct 4509789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 424
Target Start/End: Original strand, 10120175 - 10120231
Alignment:
Q  368 ggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtccccta 424  Q
    |||||||| ||| ||||| ||||||||||||| |||||||||||||||| |||||||    
T  10120175 ggctaaacaacaattttggccccctaagtttgtcaatgttgcgattttgatccccta 10120231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 365 - 424
Target Start/End: Original strand, 20409064 - 20409123
Alignment:
Q  365 ttaggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtccccta 424  Q
    |||||||||||| ||||||||||||||||| |||  ||||| ||||||||||| ||||||    
T  20409064 ttaggctaaactgcagttttgaccccctaactttcacaatggtgcgattttggcccccta 20409123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 367
Target Start/End: Original strand, 33574242 - 33574293
Alignment:
Q  316 tacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    ||||||||||||||||||||||||| ||||||||||||  || |||||||||    
T  33574242 tacggtacactcacaaaatgaggtgtaccggtactcctgcttcttaatttta 33574293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 8549565 - 8549607
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    |||||||||||||||||||||||||||||||| |||| |||||    
T  8549565 gaacttctacggtacactcacaaaatgaggtgtaccgatactc 8549607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 340
Target Start/End: Complemental strand, 9687183 - 9687149
Alignment:
Q  306 agagaacttctacggtacactcacaaaatgaggtg 340  Q
    |||||||||||||||||||||||||||||||||||    
T  9687183 agagaacttctacggtacactcacaaaatgaggtg 9687149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 351
Target Start/End: Complemental strand, 33574757 - 33574715
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  33574757 gaacttctacggtacactcacaaagtgaggtgtaccggtactc 33574715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 351
Target Start/End: Complemental strand, 33574935 - 33574893
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  33574935 gaacttctacggtacactcacaaagtgaggtgtaccggtactc 33574893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 367 - 424
Target Start/End: Complemental strand, 16864551 - 16864494
Alignment:
Q  367 aggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtccccta 424  Q
    |||||||||| ||||||| ||||||||| |||  ||||| ||||||||||||||||||    
T  16864551 aggctaaactgcagttttaaccccctaacttttacaatggtgcgattttggtccccta 16864494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 11763175 - 11763219
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 353  Q
    |||||||||||||||||||||| | ||||||| ||||||||||||    
T  11763175 gaacttctacggtacactcacagagtgaggtgtaccggtactcct 11763219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 23069104 - 23069060
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 353  Q
    |||||| ||||||||||||||||| ||||||| ||||||||||||    
T  23069104 gaacttttacggtacactcacaaagtgaggtgtaccggtactcct 23069060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 367
Target Start/End: Complemental strand, 18772269 - 18772206
Alignment:
Q  304 caagagaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||| |||||||||||||||||||||||| ||| ||| | ||||||||||| ||  ||||||||    
T  18772269 caagggaacttctacggtacactcacaaagtgaagtgtatcggtactcctacttcataatttta 18772206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 351
Target Start/End: Complemental strand, 14779307 - 14779265
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    |||||||||| ||||||||||||||||||| | ||||||||||    
T  14779307 gaacttctacagtacactcacaaaatgaggggtaccggtactc 14779265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 10966028 - 10965983
Alignment:
Q  309 gaacttctacggtacac-tcacaaaatgaggtgcaccggtactcct 353  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  10966028 gaacttctacggtacacctcacaaattgaggtgtaccggtactcct 10965983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 416
Target Start/End: Complemental strand, 20410276 - 20410227
Alignment:
Q  367 aggctaaactacagttttgaccccctaagtttgccaatgttgcgattttg 416  Q
    |||||||||| ||||||||||||||||| |||  ||||| ||||||||||    
T  20410276 aggctaaactgcagttttgaccccctaacttttacaatggtgcgattttg 20410227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 423
Target Start/End: Original strand, 12181594 - 12181650
Alignment:
Q  367 aggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccct 423  Q
    |||||||||| ||||||||||| ||||| ||||  ||||||| |||||||| |||||    
T  12181594 aggctaaactgcagttttgacctcctaactttgtaaatgttgggattttggccccct 12181650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 305 - 364
Target Start/End: Original strand, 37675935 - 37675994
Alignment:
Q  305 aagagaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatt 364  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||| || ||||||    
T  37675935 aagagaatttctacggtacactcacaaaatgaggtgtaccggtactcctacttcttaatt 37675994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 367 - 421
Target Start/End: Complemental strand, 13883927 - 13883873
Alignment:
Q  367 aggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtccc 421  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||| ||||    
T  13883927 aggctaaactacagttttgaccccttaagtttgtcaatgttgcgattttgatccc 13883873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 309 - 367
Target Start/End: Complemental strand, 41720653 - 41720595
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||||||||||||||||||||||||||||  ||||||||| ||| ||||||||||||    
T  41720653 gaacttctacggtacactcacaaaatgaggtataccggtacttctactttttaatttta 41720595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 363 - 454
Target Start/End: Original strand, 13882650 - 13882741
Alignment:
Q  363 ttttaggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaatnnnnnnnntgaatattttgccccctatg 454  Q
    ||||||||||||||||| |||||| | |||||||||||||||||||  ||||||  ||||||||        ||||||||||||||||||||    
T  13882650 ttttaggctaaactacaattttgatctcctaagtttgccaatgttgtaattttgaccccctaataaaaaaaatgaatattttgccccctatg 13882741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 365 - 424
Target Start/End: Original strand, 38612216 - 38612275
Alignment:
Q  365 ttaggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtccccta 424  Q
    |||||||||||| ||||||||||||||||| |||  ||||||||||||||||| ||||||    
T  38612216 ttaggctaaactgcagttttgaccccctaactttcacaatgttgcgattttggcccccta 38612275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 365 - 424
Target Start/End: Complemental strand, 38613478 - 38613419
Alignment:
Q  365 ttaggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtccccta 424  Q
    |||||||||||| ||||||||||||||||| |||  ||||||||||||||||| ||||||    
T  38613478 ttaggctaaactgcagttttgaccccctaactttcacaatgttgcgattttggcccccta 38613419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 307 - 353
Target Start/End: Complemental strand, 118216 - 118170
Alignment:
Q  307 gagaacttctacggtacactcacaaaatgaggtgcaccggtactcct 353  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||    
T  118216 gagaacttctatggtacactcacaaaatgaggtgtaccggtactcct 118170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 305 - 367
Target Start/End: Original strand, 39646635 - 39646697
Alignment:
Q  305 aagagaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||||||||||||||||||| | ||||| ||||| ||||||||||||| || |||||||||    
T  39646635 aagagaacttctacggtacacttataaaataaggtgtaccggtactcctacttcttaatttta 39646697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 359 - 424
Target Start/End: Complemental strand, 23039594 - 23039529
Alignment:
Q  359 ttaattttaggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtccccta 424  Q
    ||||| |||||||||||| ||||||| ||||| ||| |||| ||||| ||||||||||||||||||    
T  23039594 ttaatattaggctaaactgcagttttaaccccttaactttgacaatggtgcgattttggtccccta 23039529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 2749317 - 2749359
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    |||||||||||||| ||||||||||||||||| ||||||||||    
T  2749317 gaacttctacggtaaactcacaaaatgaggtgtaccggtactc 2749359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 351
Target Start/End: Complemental strand, 9497947 - 9497901
Alignment:
Q  305 aagagaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||||    
T  9497947 aagagaacttctacggtacactcacaagatgaggtgtatcggtactc 9497901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 351
Target Start/End: Original strand, 39300086 - 39300127
Alignment:
Q  310 aacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    ||||| ||||||||||||||||||||||||| ||||||||||    
T  39300086 aacttttacggtacactcacaaaatgaggtgtaccggtactc 39300127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 1043464 - 1043420
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 353  Q
    |||||||||||||||||||||||| |||||||||| |||| ||||    
T  1043464 gaacttctacggtacactcacaaagtgaggtgcactggtattcct 1043420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 2261418 - 2261374
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 353  Q
    ||||||||| |||||||||||||| ||||||| ||||||||||||    
T  2261418 gaacttctatggtacactcacaaagtgaggtgtaccggtactcct 2261374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 7128092 - 7128136
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 353  Q
    ||||||||| |||||||||||||||||||||| |||| |||||||    
T  7128092 gaacttctatggtacactcacaaaatgaggtgtaccgatactcct 7128136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 29454145 - 29454189
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 353  Q
    |||||||||||||||||||||||| | ||||| ||||||||||||    
T  29454145 gaacttctacggtacactcacaaagtaaggtgtaccggtactcct 29454189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 351
Target Start/End: Original strand, 10706552 - 10706599
Alignment:
Q  304 caagagaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    |||| |||||||||||||||||||||||| ||||||| || |||||||    
T  10706552 caagggaacttctacggtacactcacaaagtgaggtgtactggtactc 10706599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 351
Target Start/End: Original strand, 44000566 - 44000605
Alignment:
Q  312 cttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    ||||||||||||||||||||||||||||| | ||||||||    
T  44000566 cttctacggtacactcacaaaatgaggtgtatcggtactc 44000605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 29265591 - 29265633
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactc 351  Q
    |||||||||| ||||||||||||| ||||||| ||||||||||    
T  29265591 gaacttctactgtacactcacaaagtgaggtgtaccggtactc 29265633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 350
Target Start/End: Complemental strand, 15231390 - 15231350
Alignment:
Q  310 aacttctacggtacactcacaaaatgaggtgcaccggtact 350  Q
    ||||||||||||||||||| ||| ||||||| |||||||||    
T  15231390 aacttctacggtacactcataaagtgaggtgtaccggtact 15231350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0923 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0923
Description:

Target: scaffold0923; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 89 - 45
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcct 353  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||    
T  89 gaacttctacggtacactcacaaagtgaggtgtaccggtactcct 45  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1319 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1319
Description:

Target: scaffold1319; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 367
Target Start/End: Original strand, 45 - 103
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtactcctattttttaatttta 367  Q
    |||||||||||||||||||||||||||||||| |  |||||||||  || |||||||||    
T  45 gaacttctacggtacactcacaaaatgaggtgtattggtactcctgcttcttaatttta 103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 350
Target Start/End: Complemental strand, 237 - 196
Alignment:
Q  309 gaacttctacggtacactcacaaaatgaggtgcaccggtact 350  Q
    |||||||||||||||||||||||| ||||||| |||||||||    
T  237 gaacttctacggtacactcacaaagtgaggtgtaccggtact 196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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