View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11161_low_1 (Length: 533)
Name: NF11161_low_1
Description: NF11161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11161_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 14)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 158 - 523
Target Start/End: Complemental strand, 1141969 - 1141604
Alignment:
| Q |
158 |
aatggaaacatggaagtctctactaagttgaaccacagagttgcgatgatggaaagtaatgaacacaaacatgaactatctgttaccataagaaaaggag |
257 |
Q |
| |
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||||||||||| |||||||||||| |||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1141969 |
aatggaaacatacaagtctctactaggttgaaccgcggagttgtgatgatggaaagtaatgaacacaaacatgaactatctgttaccataagaaaaggag |
1141870 |
T |
|
| Q |
258 |
gaggaataggcagaggaataggcagaggagtgggtggtggaattatcggtgctggagttatcggcggatcaaccacctatgacaggagtcatcactccaa |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1141869 |
gaggaataggcagaggaataggcagaggagtgggtggtggagttatcggtgctggagttatcggcgggtcaaccacctatgacaggagtcatcactccaa |
1141770 |
T |
|
| Q |
358 |
tagttctgcatcatcattatctgcagggccttacgtttgtgtctcaacattgattttgtgtttgagcttttggttataatcatattgtttcacttccact |
457 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1141769 |
tagttctgcatcatcattatctgcagggccttatgtttgtgtctcaacatttattttatgtttgagcttttggttataatcatattgtttcacttccact |
1141670 |
T |
|
| Q |
458 |
agtttagtatcatgttatgtagtttttgtataggcctacaattaaaaacatgtttgcttgtctctg |
523 |
Q |
| |
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||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1141669 |
agtttagtatcgtgttatgtagcttttgtataggcctagcattaaaaacatgtttgcttgtctctg |
1141604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 14 - 155
Target Start/End: Complemental strand, 1142149 - 1142008
Alignment:
| Q |
14 |
tttaattcatcaaacataactattaagctctttccaaacaatctcaaatcccaattctttgcaaacactaacatgaagcttatgcttctttcaactttcc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1142149 |
tttaattcatcaaacataactattaagctctttccaaacaatctcaaatcccaattctttgcaaacactaacatgaagcttatgcttctttcaactttcc |
1142050 |
T |
|
| Q |
114 |
ttctcatcatttcaacagctctagccaacatatcaaatgaac |
155 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1142049 |
ttctcatcatttcaacagctctagccaacatatcaaatgaac |
1142008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 290 - 497
Target Start/End: Complemental strand, 1137183 - 1136976
Alignment:
| Q |
290 |
ggtggtggaattatcggtgctggagttatcggcggatcaaccacctatgacaggagtcatcactccaatagttctgcatcatcattatctgcagggcctt |
389 |
Q |
| |
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|||| |||||||||||||||||||||||| ||||| |||||| ||||| || ||||||||| |||||||||||||||| ||||||||||||||||||||| |
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|
| T |
1137183 |
ggtgctggaattatcggtgctggagttattggcgggtcaaccgcctatcacgggagtcatcgctccaatagttctgcaccatcattatctgcagggcctt |
1137084 |
T |
|
| Q |
390 |
acgtttgtgtctcaacattgattttgtgtttgagcttttggttataatcatattgtttcacttccactagtttagtatcatgttatgtagtttttgtata |
489 |
Q |
| |
|
| ||||||||||||||||| |||| ||||||||||||||| | |||| | ||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1137083 |
atgtttgtgtctcaacatttcttttatgtttgagcttttggctttaattacattgtttcacttccactagtttagtatcatgttatgtagcttttgtata |
1136984 |
T |
|
| Q |
490 |
ggcctaca |
497 |
Q |
| |
|
|||||||| |
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|
| T |
1136983 |
ggcctaca |
1136976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 158 - 261
Target Start/End: Complemental strand, 1137369 - 1137266
Alignment:
| Q |
158 |
aatggaaacatggaagtctctactaagttgaaccacagagttgcgatgatggaaagtaatgaacacaaacatgaactatctgttaccataagaaaaggag |
257 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1137369 |
aatggaaacatagaagtctctactaggttgaaccacagagttgcgatgatggaaagtaatgaacacaaacatgaactatctgttaccataagaaaaggag |
1137270 |
T |
|
| Q |
258 |
gagg |
261 |
Q |
| |
|
|||| |
|
|
| T |
1137269 |
gagg |
1137266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 81 - 155
Target Start/End: Complemental strand, 1138090 - 1138019
Alignment:
| Q |
81 |
ctaacatgaagcttatgcttctttcaactttccttctcatcatttcaacagctctagccaacatatcaaatgaac |
155 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||| |
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|
| T |
1138090 |
ctaacatgaagcttatgcttcttgcaactttccttctcatcatttcaagagctctagc---catatcaaatgaac |
1138019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 361 - 430
Target Start/End: Complemental strand, 1181336 - 1181267
Alignment:
| Q |
361 |
ttctgcatcatcattatctgcagggccttacgtttgtgtctcaacattgattttgtgtttgagcttttgg |
430 |
Q |
| |
|
||||||| || ||||||||||| ||||| | ||||||||||||| |||||||||||||||||||||||| |
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|
| T |
1181336 |
ttctgcaacaacattatctgcatggcctcatttttgtgtctcaactttgattttgtgtttgagcttttgg |
1181267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 361 - 476
Target Start/End: Complemental strand, 1133551 - 1133436
Alignment:
| Q |
361 |
ttctgcatcatcattatctgcagggccttacgtttgtgtctcaacattgattttgtgtttgagcttttggttataatcatattgtttcacttccactagt |
460 |
Q |
| |
|
||||||| ||||||| | ||||||| |||| ||||| |||||||||| ||||| ||| | | ||||||| | |||| | |||||||||||||| |||| |
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|
| T |
1133551 |
ttctgcagcatcattttatgcagggacttatttttgtttctcaacatttattttatgtgtaatcttttggctttaattaccttgtttcacttccagtagt |
1133452 |
T |
|
| Q |
461 |
ttagtatcatgttatg |
476 |
Q |
| |
|
| |||||||||||||| |
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|
| T |
1133451 |
taagtatcatgttatg |
1133436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 361 - 470
Target Start/End: Complemental strand, 1172088 - 1171978
Alignment:
| Q |
361 |
ttctgcatcatcattatctgcagggccttacgtttgtgtctcaacattgattttgtgtttgagcttttggttataatcata-ttgtttcacttccactag |
459 |
Q |
| |
|
||||||| || ||||||||||| ||||| | || ||||||| |||||||||||||||||||| |||||| | ||| || | |||||||||||| | ||| |
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|
| T |
1172088 |
ttctgcaacaacattatctgcatggcctcattttagtgtctccacattgattttgtgtttgagtttttggctttaaacacatttgtttcacttctagtag |
1171989 |
T |
|
| Q |
460 |
tttagtatcat |
470 |
Q |
| |
|
|||||| |||| |
|
|
| T |
1171988 |
tttagtttcat |
1171978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 361 - 430
Target Start/End: Complemental strand, 1148533 - 1148464
Alignment:
| Q |
361 |
ttctgcatcatcattatctgcagggccttacgtttgtgtctcaacattgattttgtgtttgagcttttgg |
430 |
Q |
| |
|
||||||| || |||||||||||| |||| | |||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
1148533 |
ttctgcaacaacattatctgcagtgcctcatttttgtgtctcaacattgattttatgtatgagcttttgg |
1148464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 392 - 473
Target Start/End: Complemental strand, 1160120 - 1160039
Alignment:
| Q |
392 |
gtttgtgtctcaacattgattttgtgtttgagcttttggttataatcatattgtttcacttccactagtttagtatcatgtt |
473 |
Q |
| |
|
||||||||| ||||||| ||||| |||||||| |||| | | ||||||| |||||| |||||||||| || ||||||||||| |
|
|
| T |
1160120 |
gtttgtgtcccaacatttattttatgtttgagttttttgctttaatcatgttgttttacttccactaattaagtatcatgtt |
1160039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 461
Target Start/End: Complemental strand, 1164700 - 1164600
Alignment:
| Q |
361 |
ttctgcatcatcattatctgcagggccttacgtttgtgtctcaacattgattttgtgtttgagcttttggttataatcatattgtttcacttccactagt |
460 |
Q |
| |
|
|||||||||| ||||||| | ||||||| | ||||||| |||||||||||||| ||| ||||||||||| | || || || ||||||||||||| ||| |
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|
| T |
1164700 |
ttctgcatcaacattatcgggagggcctcatatttgtgtatcaacattgattttatgtatgagcttttggctttagacacatggtttcacttccacaagt |
1164601 |
T |
|
| Q |
461 |
t |
461 |
Q |
| |
|
| |
|
|
| T |
1164600 |
t |
1164600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 215 - 262
Target Start/End: Complemental strand, 1160354 - 1160307
Alignment:
| Q |
215 |
aatgaacacaaacatgaactatctgttaccataagaaaaggaggagga |
262 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
1160354 |
aatgcacacaaacatgaactatctgttactataagaaagggaggagga |
1160307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 1133740 - 1133696
Alignment:
| Q |
214 |
taatgaacacaaacatgaactatctgttaccataagaaaaggagg |
258 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1133740 |
taatgagcacaaacatgaactatctgttactgtaagaaaaggagg |
1133696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 1138179 - 1138140
Alignment:
| Q |
18 |
attcatcaaacataactattaagctctttccaaacaatct |
57 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
1138179 |
attcatcaaacataactattcaactctttccaaacaatct |
1138140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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