View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11161_low_2 (Length: 437)
Name: NF11161_low_2
Description: NF11161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11161_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 27835991 - 27835562
Alignment:
| Q |
1 |
acatttccctatcaccaaatttgttcttctttttgagggcagaatggaccatcagagtgtaatgctgctcttcaatttgcagtaactactcttcaggtac |
100 |
Q |
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| T |
27835991 |
acatttccctatcaccaaatttgttcttctttttgagggcagaatggaccatcagagtgtaatgctgctcttcaatttgcagtaactactcttcaggtac |
27835892 |
T |
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| Q |
101 |
acacttgttaaaaaagctatatgcattgtagaagttgttacaaacattggcactgcaaaattgaatgcaaatggttgctgaaatttttaggttgaaaata |
200 |
Q |
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| T |
27835891 |
atacttgttaaaaaagctatatgcattgtagaagttgttacaaacattggcactgcaaaattgaatgcaaatggttgctgaaatttttaggttgaaaata |
27835792 |
T |
|
| Q |
201 |
tattagtcattggtcatagtagctgtgctggaattgaagcactgatgaagatgcaagaagatacagaaccaaggtatttcttgctcaaaatattttacca |
300 |
Q |
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| T |
27835791 |
tattagtcattggtcatagtagctgtgctggaattgaagcactgatgaagatgcaagaagatacagaaccaaggtatttcttgctcaaaatattttacgg |
27835692 |
T |
|
| Q |
301 |
ttaaaatgattgctatggccttagttctcatttgaattcattcatccttcagaaactacatacacaattgggttgccagtgggaaagttgccaaattgaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
27835691 |
ttaaaatgattgctatggccttagttctcatttgaattcattcatccttcagaaactacatacacaattgggttgccaatgggaaagttgccaaatcgaa |
27835592 |
T |
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| Q |
401 |
aacaaaagctgccacttctcgtctctgctt |
430 |
Q |
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| T |
27835591 |
aacaaaagctgccacatctcatctttgctt |
27835562 |
T |
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