View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11162_low_1 (Length: 441)
Name: NF11162_low_1
Description: NF11162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11162_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 225 - 434
Target Start/End: Complemental strand, 47186149 - 47185940
Alignment:
| Q |
225 |
ttaaggtggcacaacatggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatctagtctcca |
324 |
Q |
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| T |
47186149 |
ttaaggtggcacaacatggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatctagtctcca |
47186050 |
T |
|
| Q |
325 |
aaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagatgcaacaaatgtgcataccataaccaccaccaacattgcata |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47186049 |
aaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagatgcaacaaatgtgcataccataaccaccaccaacattgcata |
47185950 |
T |
|
| Q |
425 |
gcctttgctt |
434 |
Q |
| |
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|||||||||| |
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| T |
47185949 |
gcctttgctt |
47185940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 233 - 434
Target Start/End: Complemental strand, 47198680 - 47198479
Alignment:
| Q |
233 |
gcacaacatggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatctagtctccaaaggaaat |
332 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47198680 |
gcacaacagggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatctagtctccaaaggaaat |
47198581 |
T |
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| Q |
333 |
gtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagatgcaacaaatgtgcataccataaccaccaccaacattgcatagcctttgc |
432 |
Q |
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| T |
47198580 |
gtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagatgcaacaaatgtgcataccataaccaccaccaacattgcatagcctttgc |
47198481 |
T |
|
| Q |
433 |
tt |
434 |
Q |
| |
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|| |
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| T |
47198480 |
tt |
47198479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 47186356 - 47186214
Alignment:
| Q |
18 |
acatgagattaaatacttagtaagacactcactttcccatttacatgactttaaattcaatgcataaacctcttccagaaccaatgttgtttccatactt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47186356 |
acatgagattaaatacttagtaagacactcactttcccatttacatgactttaaattcaatgcataaacctcttccagaaccaatgttgtttccatactt |
47186257 |
T |
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| Q |
118 |
tctcagccatatcttcaatgggtatattctttgtctctggaat |
160 |
Q |
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| T |
47186256 |
tctcagccatatcttcaatgggtatattctttgtctctggaat |
47186214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 65 - 160
Target Start/End: Complemental strand, 47198848 - 47198753
Alignment:
| Q |
65 |
actttaaattcaatgcataaacctcttccagaaccaatgttgtttccatactttctcagccatatcttcaatgggtatattctttgtctctggaat |
160 |
Q |
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| T |
47198848 |
actttaaattcaatgcataaacctcctccagaaccaatgttgtttccacactgtctcagccatatcttcaataggtatattctttgtctctggaat |
47198753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 379
Target Start/End: Complemental strand, 47212705 - 47212623
Alignment:
| Q |
297 |
acactttgtccagctgatctagtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaa |
379 |
Q |
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|
||||||||||| || || | |||||| | |||||| ||||||| ||||| | |||| ||||||||||||||||||||||||| |
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|
| T |
47212705 |
acactttgtcctgcagaacgagtctctagtggaaatatctcacttggaataagccaagcaagtggaccccatgaccatgcaaa |
47212623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 80 - 154
Target Start/End: Original strand, 748369 - 748443
Alignment:
| Q |
80 |
cataaacctcttccagaaccaatgttgtttccatactttctcagccatatcttcaatgggtatattctttgtctc |
154 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| | ||| |||||||| ||||| ||||| ||||| |
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| T |
748369 |
cataaacctcttccagaaccaatgttgtttccatactctctcggtcatttcttcaattggtatgttcttggtctc |
748443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 249 - 379
Target Start/End: Original strand, 748538 - 748668
Alignment:
| Q |
249 |
aaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatctagtctccaaaggaaatgtctcactaggaatta |
348 |
Q |
| |
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||||| |||||||| | ||| |||||||||||||| | | || || ||||||||||||||||||| |||||| | |||||||||||||| ||||| | |
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| T |
748538 |
aaagcctgagcaatgacaaaggtgaacaacatgttgacacaaactgtgacactttgtccagctgatcgagtctcgagtggaaatgtctcacttggaataa |
748637 |
T |
|
| Q |
349 |
accaaccaagtggaccccatgaccatgcaaa |
379 |
Q |
| |
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|||||| || |||||||| ||||| ||||| |
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| T |
748638 |
gccaaccgagaggaccccaagaccaagcaaa |
748668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 431
Target Start/End: Original strand, 41414049 - 41414153
Alignment:
| Q |
327 |
ggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagatgcaacaaatgtgcataccataaccaccaccaacattgcatagc |
426 |
Q |
| |
|
|||||| ||||||| |||||| ||||||||| ||||||||||||||| | || | | |||||||| ||| |||| ||| || ||||| |||| ||||| |
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| T |
41414049 |
ggaaatatctcacttggaattgtccaaccaagaggaccccatgaccatccgaacgctacaacaaataggcaaaccacaactacaaccaatattgaatagc |
41414148 |
T |
|
| Q |
427 |
ctttg |
431 |
Q |
| |
|
||||| |
|
|
| T |
41414149 |
ctttg |
41414153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 379
Target Start/End: Complemental strand, 1356896 - 1356817
Alignment:
| Q |
300 |
ctttgtccagctgatctagtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaa |
379 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||| ||||||| || | ||||||||| ||||||||||| |||||| |||| |
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| T |
1356896 |
ctttgtccagctgatctaatctccaatggaaaaatctcacttggtactaaccaacctagtggaccccacgaccatccaaa |
1356817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 379
Target Start/End: Complemental strand, 36202747 - 36202702
Alignment:
| Q |
334 |
tctcactaggaattaaccaaccaagtggaccccatgaccatgcaaa |
379 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||| ||||| |
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|
| T |
36202747 |
tctcactaggaaccaaccaaccaagaggaccccatgaccaagcaaa |
36202702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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