View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11162_low_2 (Length: 291)

Name: NF11162_low_2
Description: NF11162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11162_low_2
NF11162_low_2
[»] chr1 (32 HSPs)
chr1 (1-291)||(9318319-9318609)
chr1 (1-291)||(9319693-9319983)
chr1 (5-291)||(9255061-9255347)
chr1 (1-291)||(9350010-9350300)
chr1 (119-290)||(9348696-9348867)
chr1 (1-291)||(8920484-8920777)
chr1 (1-291)||(8941805-8942098)
chr1 (1-291)||(8931889-8932182)
chr1 (1-291)||(8955811-8956104)
chr1 (5-291)||(9399420-9399709)
chr1 (5-291)||(9486222-9486511)
chr1 (1-278)||(9142900-9143177)
chr1 (1-77)||(9384230-9384306)
chr1 (1-278)||(9152453-9152730)
chr1 (1-147)||(9105020-9105166)
chr1 (5-291)||(9432870-9433159)
chr1 (1-79)||(9234088-9234166)
chr1 (206-291)||(9454061-9454146)
chr1 (1-79)||(9056564-9056642)
chr1 (4-77)||(8964517-8964590)
chr1 (206-279)||(9488353-9488426)
chr1 (1-72)||(9096838-9096909)
chr1 (1-79)||(9082568-9082646)
chr1 (4-77)||(8999668-8999741)
chr1 (211-291)||(9384013-9384093)
chr1 (4-77)||(8874100-8874173)
chr1 (7-76)||(9488556-9488625)
chr1 (208-271)||(8874304-8874367)
chr1 (232-291)||(9234322-9234381)
chr1 (229-291)||(11005279-11005341)
chr1 (206-275)||(9435819-9435888)
chr1 (5-150)||(9453857-9454002)
[»] chr3 (1 HSPs)
chr3 (1-290)||(9159384-9159673)
[»] chr6 (1 HSPs)
chr6 (1-291)||(15927225-15927515)


Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 9318319 - 9318609
Alignment:
Q  1 tacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttgatggaaatggcaagtaagaaaagaaacttaaatccacatg 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9318319 tacaaaaatattggaggagtatcctacaaggccgatgtatatagctttggaatgcttttgatggaaatggcaagtaagaaaagaaatttaaatccacatg 9318418  T
Q  101 ccgaacgttcaagtcaaattttctttcccatttggatttataatcaattgattgaagaaaaggagatagaaatggatgaaattacatacgaggaaaataa 200  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  9318419 ccgatcgttcaagtcaaattttctttcccatttggatttataatcaattgattgaagacaaggagatagaaatagatgaaattacatacgaggaaaataa 9318518  T
Q  201 taatgtgaagaagatgttcataattgcattatggtgtatacaattgaaaccatgtgatcgtccttcaatgaacaaagtgatagagatgctt 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9318519 taatgtgaagaagatgttcataattgcattatggtgtatacaattgaaaccatgtgatcgtccttcaatgaacaaagtgatagagatgctt 9318609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 9319983 - 9319693
Alignment:
Q  1 tacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttgatggaaatggcaagtaagaaaagaaacttaaatccacatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9319983 tacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttgatggaaatggcaagtaagaaaagaaacttaaatccacatg 9319884  T
Q  101 ccgaacgttcaagtcaaattttctttcccatttggatttataatcaattgattgaagaaaaggagatagaaatggatgaaattacatacgaggaaaataa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||| ||| |||||||||||||||||  |||| ||||||||||     
T  9319883 ccgaacgttcaagtcaaattttctttcccatttggatttataatcaattggctgatgaaagggaaatagaaatggatgaaatctcatatgaggaaaatat 9319784  T
Q  201 taatgtgaagaagatgttcataattgcattatggtgtatacaattgaaaccatgtgatcgtccttcaatgaacaaagtgatagagatgctt 291  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9319783 taatgtgaagaagatgttcataatagcattatggtgtatacaattgaaaccatgtgatcgtccttcaatgaacaaagtgatagagatgctt 9319693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 5 - 291
Target Start/End: Original strand, 9255061 - 9255347
Alignment:
Q  5 aaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttgatggaaatggcaagtaagaaaagaaacttaaatccacatgccga 104  Q
    ||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  9255061 aaaatattggaggagtatcgtacaaggccgatgtatatagctttggaatgcttttgattgaaatggcaagtaagaaaagaaatttaaatccacatgccga 9255160  T
Q  105 acgttcaagtcaaattttctttcccatttggatttataatcaattgattgaagaaaaggagatagaaatggatgaaattacatacgaggaaaataataat 204  Q
     |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  9255161 tcgttcaagtcaaattttctttcccatttggatttatgatcaattgattgaagaaaaggagatagaaatggatgaaattacatatgaggaaaataataat 9255260  T
Q  205 gtgaagaagatgttcataattgcattatggtgtatacaattgaaaccatgtgatcgtccttcaatgaacaaagtgatagagatgctt 291  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  9255261 gtgaagaagatgttcataatagcattatggtgtatacaattgaaaccatgtgatcgtccctcaatgaataaagtgatagagatgctt 9255347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 9350300 - 9350010
Alignment:
Q  1 tacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttgatggaaatggcaagtaagaaaagaaacttaaatccacatg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  9350300 tacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttgatggaaatcgcaagtaagaaaagaaatttaaatccacatg 9350201  T
Q  101 ccgaacgttcaagtcaaattttctttcccatttggatttataatcaattgattgaagaaaaggagatagaaatggatgaaattacatacgaggaaaataa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||| ||| |||||||||||||||||  |||| ||||||||||     
T  9350200 ccgaacgttcaagtcaaattttctttcccatttggatttataatcaattggctgatgaaagggaaatagaaatggatgaaatctcatatgaggaaaatat 9350101  T
Q  201 taatgtgaagaagatgttcataattgcattatggtgtatacaattgaaaccatgtgatcgtccttcaatgaacaaagtgatagagatgctt 291  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9350100 taatgtgaagaagatgttcataatagcattatggtgtatacaattgaaaccatgtgatcgtccttcaatgaacaaagtgatagagatgctt 9350010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 119 - 290
Target Start/End: Original strand, 9348696 - 9348867
Alignment:
Q  119 ttttctttcccatttggatttataatcaattgattgaagaaaaggagatagaaatggatgaaattacatacgaggaaaataataatgtgaagaagatgtt 218  Q
    ||||||||||  |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||  | |||||||| | |||||||||||| |||||    
T  9348696 ttttctttccgttttggatttataatcaatggattgaagaaaaggagatagagatggatgaaattactgatgaggaaaacagtaatgtgaagaaaatgtt 9348795  T
Q  219 cataattgcattatggtgtatacaattgaaaccatgtgatcgtccttcaatgaacaaagtgatagagatgct 290  Q
    |||||||||||||||||||||||| || |||||| ||||||||||| ||||||| ||||| |||||||||||    
T  9348796 cataattgcattatggtgtatacagttaaaaccaagtgatcgtcctgcaatgaataaagtaatagagatgct 9348867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 8920777 - 8920484
Alignment:
Q  1 tacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttgatggaaatggcaagtaagaaaagaaacttaaatccacatg 100  Q
    ||||||||||||||   ||| ||||| ||||| |||||||||||||| |||||||| ||||||||||| ||||  | || |||||| || ||  || |||    
T  8920777 tacaaaaatattggtaaagtctcctataaggccgatgtatatagctttggaatgctcttgatggaaatagcaaacaggagaagaaatttgaactcaaatg 8920678  T
Q  101 ccgaacgttcaagtcaaattttctttcccatttggatttataatcaattgattgaagaaaaggagatagaaat---ggatgaaattacatacgaggaaaa 197  Q
    |  |   ||||   |||||||||||||||  |||||| || ||| ||||||||||||||| ||||||||||||   ||  |||  |||  | ||||||||    
T  8920677 caaatgattcagaccaaattttctttccctattggatctacaatgaattgattgaagaaagggagatagaaatattgggagaagctaccaatgaggaaaa 8920578  T
Q  198 taataatgtgaagaagatgttcataattgcattatggtgtatacaattgaaaccatgtgatcgtccttcaatgaacaaagtgatagagatgctt 291  Q
     || ||||||||||||||||||||||||||  ||||||||||||||||||| ||   |||||||||||||||| ||| ||| ||||| ||||||    
T  8920577 gaaaaatgtgaagaagatgttcataattgctatatggtgtatacaattgaaccctattgatcgtccttcaatgtacagagtaatagaaatgctt 8920484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 8942098 - 8941805
Alignment:
Q  1 tacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttgatggaaatggcaagtaagaaaagaaacttaaatccacatg 100  Q
    ||||||||||||||   ||| ||||| || || ||||| |||||||| |||||||| || |||||||| ||||  | || |||||| |||||  || |||    
T  8942098 tacaaaaatattggtaaagtttcctataaagccgatgtgtatagctttggaatgctcttaatggaaatagcaaacaggagaagaaatttaaactcaaatg 8941999  T
Q  101 ccgaacgttcaagtcaaattttctttcccatttggatttataatcaattgattgaagaaaaggagatagaaa---tggatgaaattacatacgaggaaaa 197  Q
    | ||   |||||| |||||||||||||||  ||||||||| ||| ||||| ||||||||| |||||||||||   |||  ||| ||||  | ||||||||    
T  8941998 cagatgattcaagccaaattttctttccctattggatttacaatgaattggttgaagaaagggagatagaaatattgggagaagttacggatgaggaaaa 8941899  T
Q  198 taataatgtgaagaagatgttcataattgcattatggtgtatacaattgaaaccatgtgatcgtccttcaatgaacaaagtgatagagatgctt 291  Q
     || ||||||||||| ||||||||| |||| || ||||||||||||||||| ||   ||| |||||||||||| ||||||| ||||| ||||||    
T  8941898 aaaaaatgtgaagaaaatgttcatagttgctttgtggtgtatacaattgaagcccaatgaccgtccttcaatggacaaagtaatagaaatgctt 8941805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 8932182 - 8931889
Alignment:
Q  1 tacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttgatggaaatggcaagtaagaaaagaaacttaaatccacatg 100  Q
    ||||||||||||||   ||| ||||| ||||| ||||| |||||||| |||||||| || |||||||| ||||  | || |||||| || ||  || |||    
T  8932182 tacaaaaatattggtaaagtttcctataaggccgatgtgtatagctttggaatgctcttaatggaaatagcaaacaggagaagaaatttgaactcaaatg 8932083  T
Q  101 ccgaacgttcaagtcaaattttctttcccatttggatttataatcaattgattgaagaaaaggagatagaaat----ggatgaaattacatacgaggaaa 196  Q
    | ||   |||||| |||||||||||||||  ||||||||| ||| ||||||| ||||||| ||||||||| ||    ||| |||  |||  | |||||||    
T  8932082 cagatgattcaagccaaattttctttccctattggatttacaatgaattgatggaagaaagggagatagatatatctgga-gaagctaccgatgaggaaa 8931984  T
Q  197 ataataatgtgaagaagatgttcataattgcattatggtgtatacaattgaaaccatgtgatcgtccttcaatgaacaaagtgatagagatgctt 291  Q
    | || ||||||||||||||||||||||||||  | ||||||||||||||||| ||   |||||||||||||||| ||| ||| ||||| ||||||    
T  8931983 agaaaaatgtgaagaagatgttcataattgctctgtggtgtatacaattgaaccctattgatcgtccttcaatggacagagtaatagaaatgctt 8931889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 8956104 - 8955811
Alignment:
Q  1 tacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttgatggaaatggcaagtaagaaaagaaacttaaatccacatg 100  Q
    ||||||||||||||   ||| ||||| ||||| ||||| |||||||| |||||||| || |||||||| ||||  | || |||||| || ||  || |||    
T  8956104 tacaaaaatattggtaaagtttcctataaggccgatgtgtatagctttggaatgctcttaatggaaatagcaaacaggagaagaaatttgaactcaaatg 8956005  T
Q  101 ccgaacgttcaagtcaaattttctttcccatttggatttataatcaattgattgaagaaaaggagatagaaat----ggatgaaattacatacgaggaaa 196  Q
    | ||   |||||| |||||||||||||||  ||||||||| ||| |||||||||||||||  |||||||| ||    ||| |||  |||  | |||||||    
T  8956004 cagatgattcaagccaaattttctttccctattggatttacaatgaattgattgaagaaagagagatagatatatctgga-gaagctaccgatgaggaaa 8955906  T
Q  197 ataataatgtgaagaagatgttcataattgcattatggtgtatacaattgaaaccatgtgatcgtccttcaatgaacaaagtgatagagatgctt 291  Q
    | || ||||||||||||||||||||||||||  | ||||||||||||||||| ||   |||||||||||||||| ||| ||| ||||| ||||||    
T  8955905 agaaaaatgtgaagaagatgttcataattgctctgtggtgtatacaattgaaccctattgatcgtccttcaatggacagagtaatagaaatgctt 8955811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 291
Target Start/End: Complemental strand, 9399709 - 9399420
Alignment:
Q  5 aaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttgatggaaatggcaagtaagaaaagaaacttaaatccacatgccga 104  Q
    |||||||||| ||| |||| || ||||||||||| |||||||| || ||||||||||| ||||| ||||||| || |||||| || ||| ||||||| ||    
T  9399709 aaaatattgggggaatatcatataaggctgatgtgtatagctttggtatgcttttgattgaaattgcaagtaggagaagaaatttgaattcacatgctga 9399610  T
Q  105 acgttcaagtcaaattttctttcccatttggatttataatcaattgattgaagaaaaggagatagaaatggatgaaattacatacgaggaaaataataat 204  Q
     | |||||||||| |||  || ||| ||||||||||| |||||||| || || | | ||  | ||||||||| ||  | |     ||||||| |||| ||    
T  9399609 gcattcaagtcaactttatttccccttttggatttatgatcaattggttaaaaatacggttagagaaatggaagatgtgattatggaggaaattaatgat 9399510  T
Q  205 g---tgaagaagatgttcataattgcattatggtgtatacaattgaaaccatgtgatcgtccttcaatgaacaaagtgatagagatgctt 291  Q
    |   ||||||| ||||||||| ||||| | ||||||||||| ||||||||   ||||||||||||||||||||||||  |||||||||||    
T  9399509 gttttgaagaaaatgttcatagttgcactttggtgtatacagttgaaacccattgatcgtccttcaatgaacaaagtagtagagatgctt 9399420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 291
Target Start/End: Original strand, 9486222 - 9486511
Alignment:
Q  5 aaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttgatggaaatggcaagtaagaaaagaaacttaaatccacatgccga 104  Q
    ||||||| |||||| |||| |||||||||||  | |||||||| |||||||||||||| |||||||||||||  | |||||| || ||| ||||||| ||    
T  9486222 aaaatatcggaggaatatcatacaaggctgacatgtatagctttggaatgcttttgattgaaatggcaagtagaagaagaaatttgaatacacatgctga 9486321  T
Q  105 acgttcaagtcaaattttctttcccatttggatttataatcaattgattgaagaaaaggagatagaaatggatgaaatta-catacgaggaaaataataa 203  Q
     | |||||||||| ||| ||||||| ||||||||||| ||||  ||  |||| | |  || | ||||||||| ||  ||| |||  |||||||  ||| |    
T  9486322 gcattcaagtcaactttactttcccttttggatttatgatcagctgtctgaaaatagagaaagagaaatggaagatgttatcat-ggaggaaatcaatga 9486420  T
Q  204 tg---tgaagaagatgttcataattgcattatggtgtatacaattgaaaccatgtgatcgtccttcaatgaacaaagtgatagagatgctt 291  Q
    ||   ||||||| |||||| || ||||| | ||||||||||| ||||||||   ||||||||||||||||||||||||  |||||||||||    
T  9486421 tgttttgaagaaaatgttcctagttgcactttggtgtatacagttgaaacccattgatcgtccttcaatgaacaaagtagtagagatgctt 9486511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 9142900 - 9143177
Alignment:
Q  1 tacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttgatggaaatggcaagtaagaaaagaaacttaaatccacatg 100  Q
    |||||||||||||| ||||| ||||| ||||| ||||| ||||| ||||| |||||||||||||| ||||||||||| | || |||| ||||| | ||||    
T  9142900 tacaaaaatattgggggagtgtcctataaggccgatgtttatagtttcgggatgcttttgatggagatggcaagtaaaagaaaaaacctaaatgcccatg 9142999  T
Q  101 ccgaacgttcaagtcaaattttctttcccatttggatttataatcaattgattgaagaaaaggagatagaaatggatgaaattacatacgaggaaaataa 200  Q
    | ||   |||||| ||| ||| ||||||  | ||||||||| |||||||     |||||   || |||||||| || ||  | ||  | |||||||||||    
T  9143000 cggagtattcaagccaactttactttcctttatggatttatgatcaatttgcacaagaaggagaaatagaaatagaagatgtcacggaggaggaaaataa 9143099  T
Q  201 taatgtgaagaagatgttcataattgcattatggtgtatacaattgaaaccatgtgatcgtccttcaatgaacaaagt 278  Q
     |   | ||||||||| ||||| ||||| | |||||||||||||||||||||  |||||| || ||||||||||||||    
T  9143100 aatactaaagaagatgatcatagttgcactttggtgtatacaattgaaaccagctgatcgcccctcaatgaacaaagt 9143177  T

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Target: chr1; HSP #13
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 9384306 - 9384230
Alignment:
Q  1 tacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttgatggaaatggcaagtaa 77  Q
    |||||||||||||| ||||| || ||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  9384306 tacaaaaatattggtggagtgtcttacaaggctgatgtatatagctttggaatgcttttgatggaaatggcaggtaa 9384230  T

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Target: chr1; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 9152453 - 9152730
Alignment:
Q  1 tacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttgatggaaatggcaagtaagaaaagaaacttaaatccacatg 100  Q
    |||| |||||| || ||||| ||||| ||||| ||||| ||||| || || |||||||||||||| ||| ||||||| |  | |||||||||| |  | |    
T  9152453 tacataaatatcgggggagtgtcctataaggccgatgtttatagttttgggatgcttttgatggagatgacaagtaaaagcaaaaacttaaattccgaag 9152552  T
Q  101 ccgaacgttcaagtcaaattttctttcccatttggatttataatcaattgattgaagaaaaggagatagaaatggatgaaattacatacgaggaaaataa 200  Q
      || | |||||||||| ||| ||||||  |||| ||||||||||||||     |||||   ||||||||||| || ||  | ||| | |||||||||||    
T  9152553 aagagcattcaagtcaactttactttccgttttgaatttataatcaatttggacaagaaggagagatagaaatagaagatgtcacagaggaggaaaataa 9152652  T
Q  201 taatgtgaagaagatgttcataattgcattatggtgtatacaattgaaaccatgtgatcgtccttcaatgaacaaagt 278  Q
     |  || || |||||| ||||| ||||| | |||||||||||||||||||||| |||| |||| ||||||| ||||||    
T  9152653 aatagtaaaaaagatgatcatagttgcactttggtgtatacaattgaaaccatatgattgtccctcaatgagcaaagt 9152730  T

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Target: chr1; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 9105020 - 9105166
Alignment:
Q  1 tacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttgatggaaatggcaagtaaga-aaagaaacttaaatccacat 99  Q
    |||||||||||||| ||||| ||||| ||||||||||| |||||||| || |||||||||||||| |||||| | |||| ||| || |||||| ||| ||    
T  9105020 tacaaaaatattgggggagtttcctataaggctgatgtttatagctttgggatgcttttgatggagatggcaggcaagagaaaaaaccttaaaacca-at 9105118  T
Q  100 gccgaacgttcaagtcaaattttctttcccatttggatttataatcaa 147  Q
    ||  ||| ||||||||| || |  |||||| ||||||||||| |||||    
T  9105119 gcacaacattcaagtcagatatattttcccttttggatttatgatcaa 9105166  T

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Target: chr1; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 291
Target Start/End: Original strand, 9432870 - 9433159
Alignment:
Q  5 aaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttgatggaaatggcaagtaagaaaagaaacttaaatccacatgccga 104  Q
    ||||||||||  || ||||  ||||||| ||||| ||||| || |||||||||||||| ||||| |||||||  | |||||| || ||| ||||||| ||    
T  9432870 aaaatattgggagaatatcacacaaggccgatgtgtatagttttggaatgcttttgattgaaatcgcaagtagaagaagaaatttgaattcacatgctga 9432969  T
Q  105 acgttcaagtcaaattttctttcccatttggatttataatcaattgattgaagaaaaggagatagaaatggatgaaattacatacgaggaaaataataat 204  Q
     | |||||||||| |||  || ||| ||||||||||| |||||||| || ||   |  | || ||||||||| ||  | |     ||||||| |||| ||    
T  9432970 gcattcaagtcaactttatttccccttttggatttatgatcaattggttaaaagtacagtgagagaaatggaagatgtgattatggaggaaattaatgat 9433069  T
Q  205 g---tgaagaagatgttcataattgcattatggtgtatacaattgaaaccatgtgatcgtccttcaatgaacaaagtgatagagatgctt 291  Q
    |   ||||||| || |||||| ||||| | ||||||||||| ||||||||   ||||||||||||||||||||||||  |||||||||||    
T  9433070 gttttgaagaaaatattcatagttgcactttggtgtatacagttgaaacccgttgatcgtccttcaatgaacaaagtagtagagatgctt 9433159  T

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Target: chr1; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 9234088 - 9234166
Alignment:
Q  1 tacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttgatggaaatggcaagtaaga 79  Q
    |||||||||||||| ||||| || ||||| ||||||||||| || || |||||||||||||||||||||||| ||||||    
T  9234088 tacaaaaatattggtggagtgtcgtacaaagctgatgtatacagttttggaatgcttttgatggaaatggcaggtaaga 9234166  T

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Target: chr1; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 291
Target Start/End: Original strand, 9454061 - 9454146
Alignment:
Q  206 tgaagaagatgttcataattgcattatggtgtatacaattgaaaccatgtgatcgtccttcaatgaacaaagtgatagagatgctt 291  Q
    ||||||| ||||||||| ||| ||||||||||||||| ||||||||   |||||||||||||||||| |||||  |||||||||||    
T  9454061 tgaagaaaatgttcatagttggattatggtgtatacagttgaaacccattgatcgtccttcaatgaaaaaagtagtagagatgctt 9454146  T

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Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 9056642 - 9056564
Alignment:
Q  1 tacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttgatggaaatggcaagtaaga 79  Q
    |||||||||||||| ||||| || || ||||||||||| ||||| || || ||||||||||||||||||||||| ||||    
T  9056642 tacaaaaatattggtggagtgtcgtataaggctgatgtttatagttttggtatgcttttgatggaaatggcaagcaaga 9056564  T

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Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 8964590 - 8964517
Alignment:
Q  4 aaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttgatggaaatggcaagtaa 77  Q
    ||||||||||| ||||| ||||| ||||||||||| |||||||| || |||||||||||||| |||||| ||||    
T  8964590 aaaaatattgggggagtgtcctataaggctgatgtttatagctttgggatgcttttgatggagatggcaggtaa 8964517  T

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Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 9488426 - 9488353
Alignment:
Q  206 tgaagaagatgttcataattgcattatggtgtatacaattgaaaccatgtgatcgtccttcaatgaacaaagtg 279  Q
    ||||||||||| | ||| |||||||||||||||||||  ||||||||  |||||||||||| ||||||||||||    
T  9488426 tgaagaagatgataatagttgcattatggtgtatacagatgaaaccaattgatcgtccttcgatgaacaaagtg 9488353  T

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Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 9096838 - 9096909
Alignment:
Q  1 tacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttgatggaaatggca 72  Q
    |||||||||||||| ||||| ||||| || |||||||| |||||||| || |||||||||||||| ||||||    
T  9096838 tacaaaaatattgggggagtttcctataaagctgatgtttatagctttgggatgcttttgatggagatggca 9096909  T

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Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 9082568 - 9082646
Alignment:
Q  1 tacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttgatggaaatggcaagtaaga 79  Q
    ||||||||||| || ||||| || |||||||||||||| ||||| || || |||||||||||||| |||||||| ||||    
T  9082568 tacaaaaatatagggggagtgtcgtacaaggctgatgtttatagttttgggatgcttttgatggagatggcaagcaaga 9082646  T

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Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 8999741 - 8999668
Alignment:
Q  4 aaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttgatggaaatggcaagtaa 77  Q
    ||||||||||| ||||| || || ||||||||||| |||||||| || |||||||||||||| |||||| ||||    
T  8999741 aaaaatattgggggagtgtcttataaggctgatgtttatagctttgggatgcttttgatggagatggcaggtaa 8999668  T

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Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 291
Target Start/End: Complemental strand, 9384093 - 9384013
Alignment:
Q  211 aagatgttcataattgcattatggtgtatacaattgaaaccatgtgatcgtccttcaatgaacaaagtgatagagatgctt 291  Q
    |||||||||||  ||||||| |||||||| || ||||||||  ||||||||||| |||||||||||||  | |||||||||    
T  9384093 aagatgttcatggttgcattttggtgtattcagttgaaaccgagtgatcgtcctacaatgaacaaagtagttgagatgctt 9384013  T

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Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 8874100 - 8874173
Alignment:
Q  4 aaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttgatggaaatggcaagtaa 77  Q
    ||||||||||| ||||| ||||| ||||||||||| ||||| || || |||||||||||||  |||||| ||||    
T  8874100 aaaaatattggtggagtgtcctataaggctgatgtttatagttttgggatgcttttgatggtgatggcaggtaa 8874173  T

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Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 9488625 - 9488556
Alignment:
Q  7 aatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttgatggaaatggcaagta 76  Q
    ||||||||||||||||| ||||| || ||||| |||||||| |||||| | || ||||||||||| ||||    
T  9488625 aatattggaggagtatcgtacaaagcagatgtttatagctttggaatgttgttaatggaaatggcgagta 9488556  T

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Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 271
Target Start/End: Original strand, 8874304 - 8874367
Alignment:
Q  208 aagaagatgttcataattgcattatggtgtatacaattgaaaccatgtgatcgtccttcaatga 271  Q
    ||||||||| ||||| | ||| | |||||||||||||||||||||  |||||| ||||||||||    
T  8874304 aagaagatgatcatagtggcactttggtgtatacaattgaaaccagatgatcgcccttcaatga 8874367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 232 - 291
Target Start/End: Original strand, 9234322 - 9234381
Alignment:
Q  232 tggtgtatacaattgaaaccatgtgatcgtccttcaatgaacaaagtgatagagatgctt 291  Q
    |||||||| || ||||||||  |||||||||||||||||||||||||  | |||||||||    
T  9234322 tggtgtattcagttgaaaccgagtgatcgtccttcaatgaacaaagtagttgagatgctt 9234381  T

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Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 291
Target Start/End: Original strand, 11005279 - 11005341
Alignment:
Q  229 ttatggtgtatacaattgaaaccatgtgatcgtccttcaatgaacaaagtgatagagatgctt 291  Q
    ||||||||||||||    |||||| ||||||||||||||||| | |||||||| |||||||||    
T  11005279 ttatggtgtatacagacaaaaccaggtgatcgtccttcaatggataaagtgattgagatgctt 11005341  T

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Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 275
Target Start/End: Complemental strand, 9435888 - 9435819
Alignment:
Q  206 tgaagaagatgttcataattgcattatggtgtatacaattgaaaccatgtgatcgtccttcaatgaacaa 275  Q
    ||||||||||| | ||| ||||||| |||| ||||||  ||||||||  ||||||||| |||||||||||    
T  9435888 tgaagaagatgataatagttgcattgtggtatatacagatgaaaccaattgatcgtccgtcaatgaacaa 9435819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 150
Target Start/End: Original strand, 9453857 - 9454002
Alignment:
Q  5 aaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttgatggaaatggcaagtaagaaaagaaacttaaatccacatgccga 104  Q
    ||||||||||  || ||||  ||||||| ||||| ||||| || ||||||||| |||| ||||| ||||||| ||  ||||| || ||| ||||||| ||    
T  9453857 aaaatattgggagaatatcacacaaggccgatgtgtatagttttggaatgcttctgattgaaattgcaagtaggagtagaaatttgaattcacatgctga 9453956  T
Q  105 acgttcaagtcaaattttctttcccatttggatttataatcaattg 150  Q
     | |||||| ||| |||   | ||| ||||||||||| ||||||||    
T  9453957 gcattcaagccaactttatatccccttttggatttatgatcaattg 9454002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 9159673 - 9159384
Alignment:
Q  1 tacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttgatggaaatggcaagtaagaaaagaaacttaaatccacatg 100  Q
    |||||||||||||| |||||||| |||||||||||||| ||||| || ||||||||||||||||||||||||||||||  |||||| |||||||||||||    
T  9159673 tacaaaaatattggtggagtatcatacaaggctgatgtttatagttttggaatgcttttgatggaaatggcaagtaagcgaagaaatttaaatccacatg 9159574  T
Q  101 ccgaacgttcaagtcaaattttctttcccatttggatttataatcaattgattgaagaaaaggagatagaaatggatgaaattacatacgaggaaaataa 200  Q
    | || |||||||| ||| |||||||||||  |||||||||||||||||||||||||||||| |||||||| ||||||||||||||  | |||||||  |     
T  9159573 cggatcgttcaagccaacttttctttccctattggatttataatcaattgattgaagaaaacgagatagagatggatgaaattactgatgaggaaagcag 9159474  T
Q  201 taatgtgaagaagatgttcataattgcattatggtgtatacaattgaaaccatgtgatcgtccttcaatgaacaaagtgatagagatgct 290  Q
    |||||||||||| ||||||||||||||||||||||||||||| || |||||| ||||||||||| ||||||||||||| |||||||||||    
T  9159473 taatgtgaagaaaatgttcataattgcattatggtgtatacagttaaaaccaagtgatcgtcctgcaatgaacaaagtaatagagatgct 9159384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 15927225 - 15927515
Alignment:
Q  1 tacaaaaatattggaggagtatcctacaaggctgatgtatatagcttcggaatgcttttgatggaaatggcaagtaagaaaagaaacttaaatccacatg 100  Q
    |||||||||||||||||||| || || ||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  15927225 tacaaaaatattggaggagtttcgtataaggccgatgtatatagctttggaatgcttttgatggaaatggcaagtaagagaagaaatttaaatccacatg 15927324  T
Q  101 ccgaacgttcaagtcaaattttctttcccatttggatttataatcaattgattgaagaaaaggagatagaaatggatgaaattacatacgaggaaaataa 200  Q
    | || |||||||| ||| ||||||| ||  |||||||||||||||||||||||||| ||| ||||||||| |||||  ||||||   | |||||||  ||    
T  15927325 cggatcgttcaagccaacttttcttccctttttggatttataatcaattgattgaaaaaagggagatagagatggaccaaattagtgatgaggaaagaaa 15927424  T
Q  201 taatgtgaagaagatgttcataattgcattatggtgtatacaattgaaaccatgtgatcgtccttcaatgaacaaagtgatagagatgctt 291  Q
    ||||||||| || |||||||||| ||||||||||||||| ||||| |||||| ||||||||||||||||||||| ||||||||||||||||    
T  15927425 taatgtgaataaaatgttcataactgcattatggtgtattcaattaaaaccaagtgatcgtccttcaatgaacagagtgatagagatgctt 15927515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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