View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11163_high_13 (Length: 255)

Name: NF11163_high_13
Description: NF11163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11163_high_13
NF11163_high_13
[»] chr2 (2 HSPs)
chr2 (79-194)||(3083038-3083153)
chr2 (85-194)||(38403833-38403939)
[»] scaffold0036 (1 HSPs)
scaffold0036 (85-194)||(99423-99529)
[»] chr1 (3 HSPs)
chr1 (79-170)||(40909811-40909902)
chr1 (119-194)||(33814017-33814092)
chr1 (119-194)||(33873487-33873562)
[»] chr4 (1 HSPs)
chr4 (51-83)||(50233471-50233503)


Alignment Details
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 79 - 194
Target Start/End: Complemental strand, 3083153 - 3083038
Alignment:
Q  79 tatgtcaactccaatagcagtctcctcattctcagcccctaaatgaataaagcagcacaccaaaatttggacatccttgtaagtagcaaacctgttgcct 178  Q
    ||||| ||||||||||||||| |||||||||||  |||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||| | |||||    
T  3083153 tatgttaactccaatagcagtttcctcattctccacccctaaatgaataaagcagaacaccaaaaattggacatccttgtaagtaacaaaccagctgcct 3083054  T
Q  179 tacaaaccagaagcaa 194  Q
    ||||||||||||||||    
T  3083053 tacaaaccagaagcaa 3083038  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 85 - 194
Target Start/End: Complemental strand, 38403939 - 38403833
Alignment:
Q  85 aactccaatagcagtctcctcattctcagcccctaaatgaataaagcagcacaccaaaatttggacatccttgtaagtagcaaacctgttgccttacaaa 184  Q
    ||||||||| ||||||||||||||||||||||||||||||||||   |||||||||||| ||||||||| |||||||||  ||||||| |||||||||||    
T  38403939 aactccaatggcagtctcctcattctcagcccctaaatgaataa---agcacaccaaaaattggacatcattgtaagtaataaacctgctgccttacaaa 38403843  T
Q  185 ccagaagcaa 194  Q
    ||||||||||    
T  38403842 ccagaagcaa 38403833  T

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Target: scaffold0036 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 85 - 194
Target Start/End: Complemental strand, 99529 - 99423
Alignment:
Q  85 aactccaatagcagtctcctcattctcagcccctaaatgaataaagcagcacaccaaaatttggacatccttgtaagtagcaaacctgttgccttacaaa 184  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||   |||||||| |||||||||||||||||||  ||||||| |||||||||||    
T  99529 aactccaatggcagtctcctcattctcagcccctaaatgaataaagca---caccaaaaattggacatccttgtaagtaataaacctgctgccttacaaa 99433  T
Q  185 ccagaagcaa 194  Q
    ||||||||||    
T  99432 ccagaagcaa 99423  T

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Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 79 - 170
Target Start/End: Complemental strand, 40909902 - 40909811
Alignment:
Q  79 tatgtcaactccaatagcagtctcctcattctcagcccctaaatgaataaagcagcacaccaaaatttggacatccttgtaagtagcaaacc 170  Q
    ||||| ||||||||||||||| |||| |||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||    
T  40909902 tatgttaactccaatagcagtttccttattctccgcccctaaatgaataaagcagaacaccaaaaattggacatccttgtaagtaacaaacc 40909811  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 119 - 194
Target Start/End: Complemental strand, 33814092 - 33814017
Alignment:
Q  119 aaatgaataaagcagcacaccaaaatttggacatccttgtaagtagcaaacctgttgccttacaaaccagaagcaa 194  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||| |||||||| ||||||||| |||||||||||    
T  33814092 aaatgaataaagcagcacaccaaaaattgaacatccttgtaagtaacaaacctgctgccttacataccagaagcaa 33814017  T

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Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 119 - 194
Target Start/End: Complemental strand, 33873562 - 33873487
Alignment:
Q  119 aaatgaataaagcagcacaccaaaatttggacatccttgtaagtagcaaacctgttgccttacaaaccagaagcaa 194  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||| |||||||| ||||||||| |||||||||||    
T  33873562 aaatgaataaagcagcacaccaaaaattgaacatccttgtaagtaacaaacctgctgccttacataccagaagcaa 33873487  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 50233471 - 50233503
Alignment:
Q  51 tacttatgattgtgtcattatcaaccattatgt 83  Q
    ||||||||||||||||||| |||||||||||||    
T  50233471 tacttatgattgtgtcattttcaaccattatgt 50233503  T

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