View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11163_low_10 (Length: 287)
Name: NF11163_low_10
Description: NF11163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11163_low_10 |
 | |
|
| [»] chr1 (11 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
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|
| [»] scaffold0240 (1 HSPs) |
| | |
|
| [»] scaffold0330 (1 HSPs) |
| | |
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| [»] chr5 (1 HSPs) |
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|
Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 143 - 287
Target Start/End: Original strand, 4333469 - 4333613
Alignment:
| Q |
143 |
tattatgaagggtctttccaaataacttcaacttctcccgatgctcttttgaaccgaattagtgctttcatcaactccggtataacgtttgcaacaggct |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4333469 |
tattatgaagggtctttccaaataacttcaacttctcccgatgctcttttgaaccgaattagtgctttcatcaactccggtataacgtttgcaacaggct |
4333568 |
T |
|
| Q |
243 |
tcacaatcatcttttctagcaccagagaatatagaagtagaaatc |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4333569 |
tcacaatcatcttttctagcaccagagaatatagaagtagaaatc |
4333613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 143 - 279
Target Start/End: Original strand, 4332079 - 4332215
Alignment:
| Q |
143 |
tattatgaagggtctttccaaataacttcaacttctcccgatgctcttttgaaccgaattagtgctttcatcaactccggtataacgtttgcaacaggct |
242 |
Q |
| |
|
|||||||||||| ||||| ||||||| | ||||||||||| ||||||||||||||| | |||||| | |||||||| |||||||| ||||||| ||||| |
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|
| T |
4332079 |
tattatgaagggactttcaaaataacattgacttctcccgaggctcttttgaaccgagtaagtgctctgatcaactctggtataacatttgcaaaaggct |
4332178 |
T |
|
| Q |
243 |
tcacaatcatcttttctagcaccagagaatatagaag |
279 |
Q |
| |
|
|||||||||| |||| ||||||| ||||||||||||| |
|
|
| T |
4332179 |
tcacaatcattttttttagcaccggagaatatagaag |
4332215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 4333160 - 4333228
Alignment:
| Q |
13 |
atcatgattgtcatcatattcttattatcgtatcgataaaagaataatcatctagaaacaacaaatcta |
81 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4333160 |
atcatgattgtcatcatattcttattatcgtatcgataaaagaataatcatctagaaacaacaaatcta |
4333228 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 4333285 - 4333352
Alignment:
| Q |
79 |
ctaatagcatgtttggttacatgtccaagttacaaatctcacgtttcgatgccgatttcacagctatt |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4333285 |
ctaatagcatgtttggttacatgtccaagttacaaatctcacgtttcgatgccgatttcacagctatt |
4333352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 162 - 285
Target Start/End: Complemental strand, 3374298 - 3374175
Alignment:
| Q |
162 |
aaataacttcaacttctcccgatgctcttttgaaccgaattagtgctttcatcaactccggtataacgtttgcaacaggcttcacaatcatcttttctag |
261 |
Q |
| |
|
||||||||||| |||| |||| ||||| |||||||||| |||| || | |||||||||||| |||||| ||||| |||||||||||||||||||||| |
|
|
| T |
3374298 |
aaataacttcagcttcatccgacgctctcttgaaccgaagtagttctgttatcaactccggttggacgtttacaacatgcttcacaatcatcttttctag |
3374199 |
T |
|
| Q |
262 |
caccagagaatatagaagtagaaa |
285 |
Q |
| |
|
||| |||||||| |||||||||| |
|
|
| T |
3374198 |
cacaggagaatatcgaagtagaaa |
3374175 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 285
Target Start/End: Complemental strand, 3380424 - 3380301
Alignment:
| Q |
162 |
aaataacttcaacttctcccgatgctcttttgaaccgaattagtgctttcatcaactccggtataacgtttgcaacaggcttcacaatcatcttttctag |
261 |
Q |
| |
|
||||||||||| |||||||||| ||||| ||||| ||||||||| || ||||||||| || |||| | ||||| |||||||||||||||||||||| |
|
|
| T |
3380424 |
aaataacttcagcttctcccgacgctctcttgaagcgaattagttctgtcatcaactttggctggacgtctacaacatgcttcacaatcatcttttctag |
3380325 |
T |
|
| Q |
262 |
caccagagaatatagaagtagaaa |
285 |
Q |
| |
|
|| ||||||| ||||||||||| |
|
|
| T |
3380324 |
cataggagaatagagaagtagaaa |
3380301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 286
Target Start/End: Complemental strand, 3342862 - 3342740
Alignment:
| Q |
164 |
ataacttcaacttctcccgatgctcttttgaaccgaattagtgctttcatcaactccggtataacgtttgcaacaggcttcacaatcatcttttctagca |
263 |
Q |
| |
|
||||||||| ||| || |||||||| ||||||||||||||| | |||| | ||| | | | |||||||||| ||||||||| | |||||||||||| |
|
|
| T |
3342862 |
ataacttcagcttgtcttgatgctctcttgaaccgaattagttttgtcattacctcagttctgacgtttgcaataggcttcacgaacatcttttctagat |
3342763 |
T |
|
| Q |
264 |
ccagagaatatagaagtagaaat |
286 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
3342762 |
caggagaatatagaagtagaaat |
3342740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 285
Target Start/End: Complemental strand, 3366592 - 3366469
Alignment:
| Q |
162 |
aaataacttcaacttctcccgatgctcttttgaaccgaattagtgctttcatcaactccggtataacgtttgcaacaggcttcacaatcatcttttctag |
261 |
Q |
| |
|
||||||||||| ||||||| |||||| | ||||||||||||||| | | || ||||||||| || ||| ||||| | |||||||||||||| ||||| |
|
|
| T |
3366592 |
aaataacttcagcttctccggatgctttcttgaaccgaattagttcggttattaactccggttggacttttacaacatgtttcacaatcatcttgtctag |
3366493 |
T |
|
| Q |
262 |
caccagagaatatagaagtagaaa |
285 |
Q |
| |
|
|| ||||||| |||||||||| |
|
|
| T |
3366492 |
cataggagaatagcgaagtagaaa |
3366469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 285
Target Start/End: Original strand, 6591312 - 6591395
Alignment:
| Q |
202 |
tagtgctttcatcaactccggtataacgtttgcaacaggcttcacaatcatcttttctagcaccagagaatatagaagtagaaa |
285 |
Q |
| |
|
|||| ||||||||||||||||| |||||| | |||| |||||| |||||||||||||||| ||| || ||||||||||||| |
|
|
| T |
6591312 |
tagttctttcatcaactccggtccgacgtttaaagcaggtttcacagtcatcttttctagcacaagaaaagatagaagtagaaa |
6591395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 287
Target Start/End: Complemental strand, 3364198 - 3364073
Alignment:
| Q |
162 |
aaataacttcaacttctcccgatgctcttttgaaccgaattagtgctttcatcaactccggtataacgtttgcaacaggcttcacaatcatcttttctag |
261 |
Q |
| |
|
||||||||||| ||| || ||| || |||||||| |||| ||| || ||| ||||||||| | ||||| | |||||| |||||||||||||||||| |
|
|
| T |
3364198 |
aaataacttcagcttgtctcgacgcccttttgaatcgaaccagttctgtcaataactccggtttcgcgtttagatcaggctccacaatcatcttttctag |
3364099 |
T |
|
| Q |
262 |
caccagagaatatagaagtagaaatc |
287 |
Q |
| |
|
|| ||||||||| ||| ||||||| |
|
|
| T |
3364098 |
tacaggagaatataaaagcagaaatc |
3364073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 1794208 - 1794156
Alignment:
| Q |
235 |
aacaggcttcacaatcatcttttctagcaccagagaatatagaagtagaaatc |
287 |
Q |
| |
|
||||||||||||| |||| | |||||| || ||||||||||||||||||||| |
|
|
| T |
1794208 |
aacaggcttcacagtcatatgttctaggacaggagaatatagaagtagaaatc |
1794156 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 20936321 - 20936197
Alignment:
| Q |
162 |
aaataacttcaacttctcccgatgctcttttgaaccgaattagtgctttcatcaactccggtataacgtttgcaacaggcttcacaatcatcttttctag |
261 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||| || |||||||||||||||| | |||| |||||||||||||| ||||||||||||| |
|
|
| T |
20936321 |
aaataacttcagcttctcccgacgctcttttgaaccgaattagtcctctcatcaactccggtatgaagttttcaacaggcttcacagtcatcttttctag |
20936222 |
T |
|
| Q |
262 |
caccagagaatatagaagtagaaat |
286 |
Q |
| |
|
||| |||||||||||||||||||| |
|
|
| T |
20936221 |
cacaggagaatatagaagtagaaat |
20936197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 149 - 286
Target Start/End: Complemental strand, 20954575 - 20954438
Alignment:
| Q |
149 |
gaagggtctttccaaataacttcaacttctcccgatgctcttttgaaccgaattagtgctttcatcaactccggtataacgtttgcaacaggcttcacaa |
248 |
Q |
| |
|
|||| ||||| ||||||||||||| ||||||| || ||||||||||||||||||||| || ||| || ||||||| | | | || |||||||||||| | |
|
|
| T |
20954575 |
gaagagtcttcccaaataacttcagcttctcctgacgctcttttgaaccgaattagtcctctcaccagctccggtgtgaagctttcaacaggcttcagag |
20954476 |
T |
|
| Q |
249 |
tcatcttttctagcaccagagaatatagaagtagaaat |
286 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |
|
|
| T |
20954475 |
tcatcttttctagcatgggagaatatagaagtagaaat |
20954438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 162 - 287
Target Start/End: Complemental strand, 20924711 - 20924586
Alignment:
| Q |
162 |
aaataacttcaacttctcccgatgctcttttgaaccgaattagtgctttcatcaactccggtataacgtttgcaacaggcttcacaatcatcttttctag |
261 |
Q |
| |
|
||||||||||| ||| | | || ||||| ||||||| |||||| || | |||||||||||| | |||||| ||||||||| |||||||||||||| || |
|
|
| T |
20924711 |
aaataacttcagcttgttcggacgctctcctgaaccggattagttctgttatcaactccggtttgacgttttcaacaggctccacaatcatctttttgag |
20924612 |
T |
|
| Q |
262 |
caccagagaatatagaagtagaaatc |
287 |
Q |
| |
|
||| | ||||| ||||||||||||| |
|
|
| T |
20924611 |
cacaggtgaatagagaagtagaaatc |
20924586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 287
Target Start/End: Complemental strand, 21239101 - 21238976
Alignment:
| Q |
162 |
aaataacttcaacttctcccgatgctcttttgaaccgaattagtgctttcatcaactccggtataacgtttgcaacaggcttcacaatcatcttttctag |
261 |
Q |
| |
|
||||||||||| ||||||||||||| || ||||||| ||| ||| || | | ||| || ||| |||| ||| ||| |||||||||| |||||||||||| |
|
|
| T |
21239101 |
aaataacttcagcttctcccgatgcactcttgaacctaataagttctgtgaccaattctggtctaacatttccaagaggcttcacagtcatcttttctaa |
21239002 |
T |
|
| Q |
262 |
caccagagaatatagaagtagaaatc |
287 |
Q |
| |
|
|| |||||| ||||||||||||| |
|
|
| T |
21239001 |
cataggagaattgagaagtagaaatc |
21238976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 146
Target Start/End: Original strand, 2930942 - 2931007
Alignment:
| Q |
81 |
aatagcatgtttggttacatgtccaagttacaaatctcacgtttcgatgccgatttcacagctatt |
146 |
Q |
| |
|
||||| || |||||||||| ||||||||||||||| ||||||||| ||| |||||||| |||||| |
|
|
| T |
2930942 |
aatagtatatttggttacacgtccaagttacaaatttcacgtttcaatgttgatttcactgctatt |
2931007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0240 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0240
Description:
Target: scaffold0240; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 139
Target Start/End: Original strand, 797 - 855
Alignment:
| Q |
81 |
aatagcatgtttggttacatgtccaagttacaaatctcacgtttcgatgccgatttcac |
139 |
Q |
| |
|
||||||| |||||||||| |||||| |||| ||||||||||||||||| ||||||||| |
|
|
| T |
797 |
aatagcaagtttggttacgcgtccaaattaccaatctcacgtttcgatgtcgatttcac |
855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 12982081 - 12982145
Alignment:
| Q |
82 |
atagcatgtttggttacatgtccaagttacaaatctcacgtttcgatgccgatttcacagctatt |
146 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||| ||||||||| ||| |||| ||| |||||| |
|
|
| T |
12982081 |
atagtatgtttggttacacgtccaagttacaaatttcacgtttcaatgttgattgcactgctatt |
12982145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 139
Target Start/End: Complemental strand, 7179931 - 7179876
Alignment:
| Q |
84 |
agcatgtttggttacatgtccaagttacaaatctcacgtttcgatgccgatttcac |
139 |
Q |
| |
|
||||||||||| |||| |||||| |||| |||||| ||||||||||||||||||| |
|
|
| T |
7179931 |
agcatgtttggctacacgtccaaattaccaatctcgtgtttcgatgccgatttcac |
7179876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 139
Target Start/End: Original strand, 34481728 - 34481788
Alignment:
| Q |
79 |
ctaatagcatgtttggttacatgtccaagttacaaatctcacgtttcgatgccgatttcac |
139 |
Q |
| |
|
|||||||||||||| ||||| |||||| | || |||||| |||||||||||||||||||| |
|
|
| T |
34481728 |
ctaatagcatgtttagttacgcgtccaaataaccaatctcgcgtttcgatgccgatttcac |
34481788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0330 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0330
Description:
Target: scaffold0330; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 139
Target Start/End: Original strand, 16779 - 16837
Alignment:
| Q |
81 |
aatagcatgtttggttacatgtccaagttacaaatctcacgtttcgatgccgatttcac |
139 |
Q |
| |
|
||||||| |||||||||| |||||| |||| |||||||||||| |||| ||||||||| |
|
|
| T |
16779 |
aatagcaagtttggttacgcgtccaaattaccaatctcacgtttagatgtcgatttcac |
16837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 287
Target Start/End: Complemental strand, 17971308 - 17971183
Alignment:
| Q |
162 |
aaataacttcaacttctcccgatgctcttttgaaccgaattagtgctttcatcaactccggtataacgtttgcaacaggcttcacaatcatcttttctag |
261 |
Q |
| |
|
||||||||||| ||| ||| || ||||| |||||| || ||| || |||||||||| ||| | || ||| || ||||||||||| ||||||||| || |
|
|
| T |
17971308 |
aaataacttcagcttgtcctgacgctctcctgaacctgatcagttctgtcatcaactcgggtttgacattttcagcaggcttcacagtcatcttttgaag |
17971209 |
T |
|
| Q |
262 |
caccagagaatatagaagtagaaatc |
287 |
Q |
| |
|
|| |||||||| |||||||||||| |
|
|
| T |
17971208 |
aacaggagaatattgaagtagaaatc |
17971183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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