View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11163_low_11 (Length: 271)

Name: NF11163_low_11
Description: NF11163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11163_low_11
NF11163_low_11
[»] chr4 (4 HSPs)
chr4 (51-199)||(55511907-55512055)
chr4 (155-199)||(23574616-23574660)
chr4 (156-199)||(53665086-53665129)
chr4 (167-199)||(20681727-20681759)
[»] chr6 (7 HSPs)
chr6 (51-199)||(20687469-20687617)
chr6 (47-199)||(19063665-19063817)
chr6 (156-199)||(20689056-20689099)
chr6 (156-199)||(10607344-10607387)
chr6 (156-199)||(19063550-19063593)
chr6 (156-199)||(29382840-29382883)
chr6 (156-199)||(34716170-34716213)
[»] chr5 (6 HSPs)
chr5 (51-199)||(32402195-32402342)
chr5 (119-199)||(42993163-42993243)
chr5 (156-203)||(7495257-7495304)
chr5 (156-199)||(43054376-43054419)
chr5 (163-199)||(18153441-18153477)
chr5 (167-199)||(43589173-43589205)
[»] chr3 (8 HSPs)
chr3 (51-199)||(7359736-7359885)
chr3 (51-106)||(35432140-35432195)
chr3 (142-199)||(35432207-35432264)
chr3 (205-248)||(1432250-1432293)
chr3 (156-199)||(35431337-35431380)
chr3 (155-199)||(44406202-44406246)
chr3 (156-199)||(7346190-7346233)
chr3 (162-203)||(47480508-47480549)
[»] chr7 (7 HSPs)
chr7 (156-199)||(42343301-42343344)
chr7 (155-199)||(42344213-42344257)
chr7 (164-199)||(34853342-34853377)
chr7 (156-203)||(46813092-46813139)
chr7 (163-203)||(5004189-5004229)
chr7 (155-199)||(30916495-30916539)
chr7 (154-198)||(46814245-46814289)
[»] chr8 (3 HSPs)
chr8 (155-199)||(42638153-42638197)
chr8 (156-199)||(33801504-33801547)
chr8 (163-199)||(33802380-33802416)
[»] chr1 (7 HSPs)
chr1 (163-199)||(38618235-38618271)
chr1 (163-199)||(50355003-50355039)
chr1 (163-199)||(51610228-51610264)
chr1 (155-199)||(51976269-51976313)
chr1 (156-203)||(50353840-50353887)
chr1 (163-199)||(24976726-24976762)
chr1 (163-199)||(29334954-29334990)
[»] chr2 (5 HSPs)
chr2 (164-199)||(6852817-6852852)
chr2 (156-199)||(26487845-26487888)
chr2 (163-199)||(6851917-6851953)
chr2 (163-199)||(26893487-26893523)
chr2 (163-199)||(26898926-26898962)


Alignment Details
Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 51 - 199
Target Start/End: Complemental strand, 55512055 - 55511907
Alignment:
Q  51 aaagcaaatgggaggtgtagaagcaatgtattaaaataagctaattgattttattannnnnnnagttctgacctgttaagactgccacccgtccactata 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||| |||||||| |    
T  55512055 aaagcaaatgggaggtgtagaagcaatgtattaaaataagctaattgattttattatttttttagttctgacctgttaagactgccacctgtccactaca 55511956  T
Q  151 agtggactttttcatggtgggaaagtattcctcctacccaccctaaatg 199  Q
    ||||||||||   ||||||||||||||||||||||||| ||||||||||    
T  55511955 agtggactttcctatggtgggaaagtattcctcctacctaccctaaatg 55511907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 23574616 - 23574660
Alignment:
Q  155 gactttttcatggtgggaaagtattcctcctacccaccctaaatg 199  Q
    ||||||| ||||||||||||| |||||||||| ||||||||||||    
T  23574616 gacttttccatggtgggaaagaattcctcctatccaccctaaatg 23574660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 53665086 - 53665129
Alignment:
Q  156 actttttcatggtgggaaagtattcctcctacccaccctaaatg 199  Q
    ||||||| |||||||||||| |||||| ||||||||||||||||    
T  53665086 acttttttatggtgggaaagaattccttctacccaccctaaatg 53665129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 20681759 - 20681727
Alignment:
Q  167 gtgggaaagtattcctcctacccaccctaaatg 199  Q
    ||||||||| |||||||||||||||||||||||    
T  20681759 gtgggaaagaattcctcctacccaccctaaatg 20681727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 51 - 199
Target Start/End: Complemental strand, 20687617 - 20687469
Alignment:
Q  51 aaagcaaatgggaggtgtagaagcaatgtattaaaataagctaattgattttattannnnnnnagttctgacctgttaagactgccacccgtccactata 150  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||       |||||||||||||||||||||||||| |||||||| |    
T  20687617 aaagcaaatgggaggtgtagaagcaatgtattaaaataagctaactgattttattatttttttagttctgacctgttaagactgccacctgtccactaca 20687518  T
Q  151 agtggactttttcatggtgggaaagtattcctcctacccaccctaaatg 199  Q
    ||||||||||   ||||||||||||||||||||||||| ||||||||||    
T  20687517 agtggactttcctatggtgggaaagtattcctcctacctaccctaaatg 20687469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 47 - 199
Target Start/End: Complemental strand, 19063817 - 19063665
Alignment:
Q  47 acagaaagcaaatgggaggtgtagaagcaatgtattaaaataagctaattgattttattannnnnnnagttctgacctgttaagactgccacccgtccac 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||  ||||||| ||  |||||| || ||||||    
T  19063817 acagaaagcaaatgggaggtgtagaagcaatgtattaaaataagctaattgattttattatttttttagtaatgacctgctataactgccgcctgtccac 19063718  T
Q  147 tataagtggactttttcatggtgggaaagtattcctcctacccaccctaaatg 199  Q
    || ||||| |||||  |||||| |||||||||||||||||||||||| |||||    
T  19063717 tacaagtgaactttcccatggttggaaagtattcctcctacccacccaaaatg 19063665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 20689056 - 20689099
Alignment:
Q  156 actttttcatggtgggaaagtattcctcctacccaccctaaatg 199  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||    
T  20689056 actttgtcatggtaggaaagtattcctcctacccaccctaaatg 20689099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 10607344 - 10607387
Alignment:
Q  156 actttttcatggtgggaaagtattcctcctacccaccctaaatg 199  Q
    ||||| ||||||||||||||||||||  ||||||||||||||||    
T  10607344 actttgtcatggtgggaaagtattccctctacccaccctaaatg 10607387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 19063550 - 19063593
Alignment:
Q  156 actttttcatggtgggaaagtattcctcctacccaccctaaatg 199  Q
    ||||| ||||||||||||||| |||||| |||||||||||||||    
T  19063550 actttgtcatggtgggaaagtcttcctcttacccaccctaaatg 19063593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 29382840 - 29382883
Alignment:
Q  156 actttttcatggtgggaaagtattcctcctacccaccctaaatg 199  Q
    ||||| ||||||||| ||||| ||||||||||||||||||||||    
T  29382840 actttgtcatggtggaaaagtcttcctcctacccaccctaaatg 29382883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 199
Target Start/End: Complemental strand, 34716213 - 34716170
Alignment:
Q  156 actttttcatggtgggaaagtattcctcctacccaccctaaatg 199  Q
    ||||| ||||||||||||||||||||  ||||||||||||||||    
T  34716213 actttgtcatggtgggaaagtattccctctacccaccctaaatg 34716170  T

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Target: chr5 (Bit Score: 72; Significance: 8e-33; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 51 - 199
Target Start/End: Complemental strand, 32402342 - 32402195
Alignment:
Q  51 aaagcaaatgggaggtgtagaagcaatgtattaaaataagctaattgattttattannnnnnnagttctgacctgttaagactgccacccgtccactata 150  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||       |||  ||| ||| ||| ||||||||| || ||||| |    
T  32402342 aaagcaaatgggaggtgtaaaagcaatgtattaaaataagctaattgattttattattttcttagtaatgatctgctaa-actgccacctgtacactaca 32402244  T
Q  151 agtggactttttcatggtgggaaagtattcctcctacccaccctaaatg 199  Q
    ||||||||||  |||||||||||||| |||||||||||||| |||||||    
T  32402243 agtggactttcccatggtgggaaagtcttcctcctacccactctaaatg 32402195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 199
Target Start/End: Original strand, 42993163 - 42993243
Alignment:
Q  119 tgacctgttaagactgccacccgtccactataagtggactttttcatggtgggaaagtattcctcctacccaccctaaatg 199  Q
    ||||||||||  ||||||||  ||| |||| |||| ||||||| |||||||||| || |||||| ||||||||||||||||    
T  42993163 tgacctgttataactgccacatgtctactaaaagtagacttttccatggtgggatagaattccttctacccaccctaaatg 42993243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 7495257 - 7495304
Alignment:
Q  156 actttttcatggtgggaaagtattcctcctacccaccctaaatgtcac 203  Q
    ||||| |||||||||||||| ||||| |||||||||||||||||||||    
T  7495257 actttctcatggtgggaaagaattccccctacccaccctaaatgtcac 7495304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 43054376 - 43054419
Alignment:
Q  156 actttttcatggtgggaaagtattcctcctacccaccctaaatg 199  Q
    ||||| ||||||||||||||| ||||||||||||||| ||||||    
T  43054376 actttgtcatggtgggaaagtcttcctcctacccaccttaaatg 43054419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 18153441 - 18153477
Alignment:
Q  163 catggtgggaaagtattcctcctacccaccctaaatg 199  Q
    |||||||| |||| |||||||||||||||||||||||    
T  18153441 catggtggaaaagaattcctcctacccaccctaaatg 18153477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 43589173 - 43589205
Alignment:
Q  167 gtgggaaagtattcctcctacccaccctaaatg 199  Q
    ||||||||| |||||||||||||||||||||||    
T  43589173 gtgggaaagaattcctcctacccaccctaaatg 43589205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 51 - 199
Target Start/End: Original strand, 7359736 - 7359885
Alignment:
Q  51 aaagcaaatgggaggtgt--agaagcaatgtattaaaataagctaattgattttattannnnnnnagttctgacctgttaagactgccacccgtccacta 148  Q
    ||||||||||||||||||  |||||||||||||||||||||| ||||||||||||| |       | |  ||||||| ||| ||||||||| |||||||     
T  7359736 aaagcaaatgggaggtgtgtagaagcaatgtattaaaataagttaattgattttataatttttttaataatgacctgctaa-actgccacctgtccactg 7359834  T
Q  149 taagtggactttttcatggtgggaaagtattcctcctacccaccctaaatg 199  Q
     |||||||||||  |||||||||||||| |||||| |||||||||||||||    
T  7359835 caagtggactttcccatggtgggaaagtcttcctcttacccaccctaaatg 7359885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 106
Target Start/End: Original strand, 35432140 - 35432195
Alignment:
Q  51 aaagcaaatgggaggtgtagaagcaatgtattaaaataagctaattgattttatta 106  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  35432140 aaagcaaatgggaggtgtaaaagcaatgtattaaaataacctaattgattttatta 35432195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 35432207 - 35432264
Alignment:
Q  142 tccactataagtggactttttcatggtgggaaagtattcctcctacccaccctaaatg 199  Q
    ||||||| |||||||||||| ||||||||||||| |||||| ||||||||||||||||    
T  35432207 tccactacaagtggacttttccatggtgggaaagaattccttctacccaccctaaatg 35432264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 248
Target Start/End: Complemental strand, 1432293 - 1432250
Alignment:
Q  205 tgttagtgttgatgtttttttatattataggaaaatgttaacga 248  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  1432293 tgttagtgttgatgtttttttatattatagggaaatgttaacga 1432250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 199
Target Start/End: Complemental strand, 35431380 - 35431337
Alignment:
Q  156 actttttcatggtgggaaagtattcctcctacccaccctaaatg 199  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  35431380 actttgtcatggtgggaaagtattcctcctacccaccctaaatg 35431337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 44406246 - 44406202
Alignment:
Q  155 gactttttcatggtgggaaagtattcctcctacccaccctaaatg 199  Q
    ||||||| ||||||||||||| |||| ||||||||||||||||||    
T  44406246 gacttttccatggtgggaaagaattcttcctacccaccctaaatg 44406202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 199
Target Start/End: Complemental strand, 7346233 - 7346190
Alignment:
Q  156 actttttcatggtgggaaagtattcctcctacccaccctaaatg 199  Q
    ||||| ||||||||||||||| |||||| |||||||||||||||    
T  7346233 actttgtcatggtgggaaagtcttcctcttacccaccctaaatg 7346190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 47480549 - 47480508
Alignment:
Q  162 tcatggtgggaaagtattcctcctacccaccctaaatgtcac 203  Q
    ||||||||| |||  |||||||||||||||||||||||||||    
T  47480549 tcatggtggaaaataattcctcctacccaccctaaatgtcac 47480508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 199
Target Start/End: Complemental strand, 42343344 - 42343301
Alignment:
Q  156 actttttcatggtgggaaagtattcctcctacccaccctaaatg 199  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  42343344 actttttcatggtaggaaagtattcctcctacccaccctaaatg 42343301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 42344213 - 42344257
Alignment:
Q  155 gactttttcatggtgggaaagtattcctcctacccaccctaaatg 199  Q
    |||||||  |||||||||||| |||||||||||||||||||||||    
T  42344213 gacttttctatggtgggaaagaattcctcctacccaccctaaatg 42344257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 199
Target Start/End: Original strand, 34853342 - 34853377
Alignment:
Q  164 atggtgggaaagtattcctcctacccaccctaaatg 199  Q
    ||||||||||||| ||||||||||||||||||||||    
T  34853342 atggtgggaaagtcttcctcctacccaccctaaatg 34853377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 46813139 - 46813092
Alignment:
Q  156 actttttcatggtgggaaagtattcctcctacccaccctaaatgtcac 203  Q
    ||||| ||||||||||||||||||||  ||||||| ||||||||||||    
T  46813139 actttgtcatggtgggaaagtattccctctacccatcctaaatgtcac 46813092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 5004229 - 5004189
Alignment:
Q  163 catggtgggaaagtattcctcctacccaccctaaatgtcac 203  Q
    |||||||| |||| |||||||||||||| ||||||||||||    
T  5004229 catggtggaaaagaattcctcctacccatcctaaatgtcac 5004189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 30916495 - 30916539
Alignment:
Q  155 gactttttcatggtgggaaagtattcctcctacccaccctaaatg 199  Q
    ||||||| |||| |||||||| |||| ||||||||||||||||||    
T  30916495 gacttttccatgatgggaaagaattcttcctacccaccctaaatg 30916539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 46814245 - 46814289
Alignment:
Q  154 ggactttttcatggtgggaaagtattcctcctacccaccctaaat 198  Q
    |||||||  ||||||||||||| |||||||||||||| |||||||    
T  46814245 ggactttcccatggtgggaaagaattcctcctacccatcctaaat 46814289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 42638197 - 42638153
Alignment:
Q  155 gactttttcatggtgggaaagtattcctcctacccaccctaaatg 199  Q
    |||||| ||||||||| |||| |||||||||||||||||||||||    
T  42638197 gactttctcatggtggaaaagaattcctcctacccaccctaaatg 42638153  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 199
Target Start/End: Complemental strand, 33801547 - 33801504
Alignment:
Q  156 actttttcatggtgggaaagtattcctcctacccaccctaaatg 199  Q
    |||||| ||||||||||||| |||||| ||||||||||||||||    
T  33801547 acttttccatggtgggaaagaattccttctacccaccctaaatg 33801504  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 33802380 - 33802416
Alignment:
Q  163 catggtgggaaagtattcctcctacccaccctaaatg 199  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  33802380 catggtgggaaagaattccttctacccaccctaaatg 33802416  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 38618271 - 38618235
Alignment:
Q  163 catggtgggaaagtattcctcctacccaccctaaatg 199  Q
    ||||||||||||| |||||||||||||||||||||||    
T  38618271 catggtgggaaagaattcctcctacccaccctaaatg 38618235  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 50355003 - 50355039
Alignment:
Q  163 catggtgggaaagtattcctcctacccaccctaaatg 199  Q
    ||||||||||||| |||||||||||||||||||||||    
T  50355003 catggtgggaaagaattcctcctacccaccctaaatg 50355039  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 51610228 - 51610264
Alignment:
Q  163 catggtgggaaagtattcctcctacccaccctaaatg 199  Q
    |||||||||||| ||||||||||||||||||||||||    
T  51610228 catggtgggaaaatattcctcctacccaccctaaatg 51610264  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 51976313 - 51976269
Alignment:
Q  155 gactttttcatggtgggaaagtattcctcctacccaccctaaatg 199  Q
    ||||||| |||||||| |||| |||||||||||||||||||||||    
T  51976313 gacttttccatggtggaaaagaattcctcctacccaccctaaatg 51976269  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 50353887 - 50353840
Alignment:
Q  156 actttttcatggtgggaaagtattcctcctacccaccctaaatgtcac 203  Q
    ||||| ||||||||||||||||||||  ||||||| ||||||||||||    
T  50353887 actttatcatggtgggaaagtattccctctacccatcctaaatgtcac 50353840  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 24976726 - 24976762
Alignment:
Q  163 catggtgggaaagtattcctcctacccaccctaaatg 199  Q
    |||||||| |||| |||||||||||||||||||||||    
T  24976726 catggtggaaaagaattcctcctacccaccctaaatg 24976762  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 29334954 - 29334990
Alignment:
Q  163 catggtgggaaagtattcctcctacccaccctaaatg 199  Q
    ||||||||||||  |||||||||||||||||||||||    
T  29334954 catggtgggaaataattcctcctacccaccctaaatg 29334990  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 199
Target Start/End: Original strand, 6852817 - 6852852
Alignment:
Q  164 atggtgggaaagtattcctcctacccaccctaaatg 199  Q
    |||||||||||| |||||||||||||||||||||||    
T  6852817 atggtgggaaagaattcctcctacccaccctaaatg 6852852  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 26487845 - 26487888
Alignment:
Q  156 actttttcatggtgggaaagtattcctcctacccaccctaaatg 199  Q
    ||||| ||||||| |||||| |||||||||||||||||||||||    
T  26487845 actttctcatggtaggaaagaattcctcctacccaccctaaatg 26487888  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 6851953 - 6851917
Alignment:
Q  163 catggtgggaaagtattcctcctacccaccctaaatg 199  Q
    |||| |||||||| |||||||||||||||||||||||    
T  6851953 catgatgggaaagaattcctcctacccaccctaaatg 6851917  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 26893523 - 26893487
Alignment:
Q  163 catggtgggaaagtattcctcctacccaccctaaatg 199  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  26893523 catggtgggaaagaattccttctacccaccctaaatg 26893487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 26898962 - 26898926
Alignment:
Q  163 catggtgggaaagtattcctcctacccaccctaaatg 199  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  26898962 catggtgggaaagaattccttctacccaccctaaatg 26898926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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