View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11163_low_12 (Length: 259)
Name: NF11163_low_12
Description: NF11163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11163_low_12 |
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| [»] chr7 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 13 - 178
Target Start/End: Original strand, 33366315 - 33366480
Alignment:
| Q |
13 |
gagaagaaatagagtgagaaagagacttgggttaaacagtaatttcgtaatatatcaataaatgtagtaaatttcgttattaagcaaaattcaaaatctc |
112 |
Q |
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| T |
33366315 |
gagaagaaatagagtgagaaagagacttgggttaaacagtaacttcgtaatatatcaataaatgtagtaaatttcgttattaagcaaaattcaaaatctc |
33366414 |
T |
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| Q |
113 |
tctatcttccatttttgttgttatagtaccttcattctttcgggagtattacttttcccaccctat |
178 |
Q |
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| T |
33366415 |
tctatcttccatttttgttgttatagtaccttcattctttcaggagtattactttttccatcctat |
33366480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 259
Target Start/End: Complemental strand, 3305013 - 3304966
Alignment:
| Q |
212 |
aaaaatgtctttgagattttcggatttcataatctgaaatgatgtttt |
259 |
Q |
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| T |
3305013 |
aaaaatgtctttgagatttccggatttcataatttggaatggtgtttt |
3304966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 249
Target Start/End: Complemental strand, 8214762 - 8214725
Alignment:
| Q |
212 |
aaaaatgtctttgagattttcggatttcataatctgaa |
249 |
Q |
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| T |
8214762 |
aaaaatgtctttgagattttcggattttaaaatctgaa |
8214725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 259
Target Start/End: Original strand, 27212575 - 27212622
Alignment:
| Q |
212 |
aaaaatgtctttgagattttcggatttcataatctgaaatgatgtttt |
259 |
Q |
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| T |
27212575 |
aaaaatgcctttgaaattttcggatttcataatccgaactgatgtttt |
27212622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 259
Target Start/End: Original strand, 28872910 - 28872955
Alignment:
| Q |
213 |
aaaatgtctttgagattttcggatttcataatctgaaatgatgtttt |
259 |
Q |
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| T |
28872910 |
aaaatgtccttgag-ttttcggatttcataatctggaatgatgtttt |
28872955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 184
Target Start/End: Complemental strand, 30829769 - 30829739
Alignment:
| Q |
154 |
gggagtattacttttcccaccctataagctt |
184 |
Q |
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| T |
30829769 |
gggagtattacttttcccaccctataagctt |
30829739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 229 - 258
Target Start/End: Original strand, 41328502 - 41328531
Alignment:
| Q |
229 |
tttcggatttcataatctgaaatgatgttt |
258 |
Q |
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| T |
41328502 |
tttcggatttcataatctgaaatgatgttt |
41328531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 259
Target Start/End: Original strand, 32035028 - 32035065
Alignment:
| Q |
222 |
ttgagattttcggatttcataatctgaaatgatgtttt |
259 |
Q |
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| T |
32035028 |
ttgaggttttcggatttcataatctggaatgatgtttt |
32035065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 245
Target Start/End: Complemental strand, 41413329 - 41413296
Alignment:
| Q |
212 |
aaaaatgtctttgagattttcggatttcataatc |
245 |
Q |
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||||||||| |||||||||||||||||||||||| |
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| T |
41413329 |
aaaaatgtccttgagattttcggatttcataatc |
41413296 |
T |
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