View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11163_low_13 (Length: 255)
Name: NF11163_low_13
Description: NF11163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11163_low_13 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 79 - 194
Target Start/End: Complemental strand, 3083153 - 3083038
Alignment:
| Q |
79 |
tatgtcaactccaatagcagtctcctcattctcagcccctaaatgaataaagcagcacaccaaaatttggacatccttgtaagtagcaaacctgttgcct |
178 |
Q |
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||||| ||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||| | ||||| |
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| T |
3083153 |
tatgttaactccaatagcagtttcctcattctccacccctaaatgaataaagcagaacaccaaaaattggacatccttgtaagtaacaaaccagctgcct |
3083054 |
T |
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| Q |
179 |
tacaaaccagaagcaa |
194 |
Q |
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|||||||||||||||| |
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| T |
3083053 |
tacaaaccagaagcaa |
3083038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 85 - 194
Target Start/End: Complemental strand, 38403939 - 38403833
Alignment:
| Q |
85 |
aactccaatagcagtctcctcattctcagcccctaaatgaataaagcagcacaccaaaatttggacatccttgtaagtagcaaacctgttgccttacaaa |
184 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||| ||||||| ||||||||||| |
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| T |
38403939 |
aactccaatggcagtctcctcattctcagcccctaaatgaataa---agcacaccaaaaattggacatcattgtaagtaataaacctgctgccttacaaa |
38403843 |
T |
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| Q |
185 |
ccagaagcaa |
194 |
Q |
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|||||||||| |
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| T |
38403842 |
ccagaagcaa |
38403833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 85 - 194
Target Start/End: Complemental strand, 99529 - 99423
Alignment:
| Q |
85 |
aactccaatagcagtctcctcattctcagcccctaaatgaataaagcagcacaccaaaatttggacatccttgtaagtagcaaacctgttgccttacaaa |
184 |
Q |
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| T |
99529 |
aactccaatggcagtctcctcattctcagcccctaaatgaataaagca---caccaaaaattggacatccttgtaagtaataaacctgctgccttacaaa |
99433 |
T |
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| Q |
185 |
ccagaagcaa |
194 |
Q |
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|||||||||| |
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| T |
99432 |
ccagaagcaa |
99423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 79 - 170
Target Start/End: Complemental strand, 40909902 - 40909811
Alignment:
| Q |
79 |
tatgtcaactccaatagcagtctcctcattctcagcccctaaatgaataaagcagcacaccaaaatttggacatccttgtaagtagcaaacc |
170 |
Q |
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||||| ||||||||||||||| |||| |||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||| |
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| T |
40909902 |
tatgttaactccaatagcagtttccttattctccgcccctaaatgaataaagcagaacaccaaaaattggacatccttgtaagtaacaaacc |
40909811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 119 - 194
Target Start/End: Complemental strand, 33814092 - 33814017
Alignment:
| Q |
119 |
aaatgaataaagcagcacaccaaaatttggacatccttgtaagtagcaaacctgttgccttacaaaccagaagcaa |
194 |
Q |
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||||||||||||||||||||||||| ||| ||||||||||||||| |||||||| ||||||||| ||||||||||| |
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| T |
33814092 |
aaatgaataaagcagcacaccaaaaattgaacatccttgtaagtaacaaacctgctgccttacataccagaagcaa |
33814017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 119 - 194
Target Start/End: Complemental strand, 33873562 - 33873487
Alignment:
| Q |
119 |
aaatgaataaagcagcacaccaaaatttggacatccttgtaagtagcaaacctgttgccttacaaaccagaagcaa |
194 |
Q |
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||||||||||||||||||||||||| ||| ||||||||||||||| |||||||| ||||||||| ||||||||||| |
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| T |
33873562 |
aaatgaataaagcagcacaccaaaaattgaacatccttgtaagtaacaaacctgctgccttacataccagaagcaa |
33873487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 50233471 - 50233503
Alignment:
| Q |
51 |
tacttatgattgtgtcattatcaaccattatgt |
83 |
Q |
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||||||||||||||||||| ||||||||||||| |
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| T |
50233471 |
tacttatgattgtgtcattttcaaccattatgt |
50233503 |
T |
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