View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11163_low_3 (Length: 456)

Name: NF11163_low_3
Description: NF11163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11163_low_3
NF11163_low_3
[»] chr1 (27 HSPs)
chr1 (65-423)||(30829277-30829629)
chr1 (65-423)||(24471125-24471478)
chr1 (46-217)||(43319201-43319379)
chr1 (1-153)||(18583619-18583773)
chr1 (54-135)||(44573189-44573271)
chr1 (160-217)||(43318990-43319047)
chr1 (46-153)||(33611485-33611593)
chr1 (46-153)||(40908009-40908117)
chr1 (46-120)||(23442714-23442789)
chr1 (46-152)||(32817687-32817794)
chr1 (51-133)||(42545948-42546031)
chr1 (46-152)||(45567952-45568059)
chr1 (56-152)||(34162797-34162894)
chr1 (46-131)||(6223834-6223921)
chr1 (168-216)||(9445897-9445945)
chr1 (46-129)||(49786245-49786329)
chr1 (46-152)||(40650751-40650858)
chr1 (62-128)||(49677475-49677542)
chr1 (167-216)||(800603-800652)
chr1 (47-129)||(41584769-41584852)
chr1 (53-127)||(28866732-28866806)
chr1 (46-114)||(52744931-52745000)
chr1 (46-129)||(15069941-15070025)
chr1 (65-128)||(32542391-32542455)
chr1 (46-152)||(17000355-17000461)
chr1 (86-133)||(38950286-38950333)
chr1 (46-146)||(45046933-45047033)
[»] chr5 (34 HSPs)
chr5 (46-423)||(37094722-37095097)
chr5 (46-380)||(26319056-26319384)
chr5 (46-153)||(25746964-25747071)
chr5 (46-152)||(15799163-15799270)
chr5 (46-146)||(6156669-6156770)
chr5 (46-122)||(26190404-26190481)
chr5 (65-152)||(14111854-14111942)
chr5 (46-199)||(36359608-36359769)
chr5 (46-129)||(33487548-33487632)
chr5 (53-152)||(39524721-39524821)
chr5 (46-120)||(12465214-12465289)
chr5 (46-152)||(20891551-20891658)
chr5 (54-152)||(40620066-40620165)
chr5 (56-129)||(38692881-38692955)
chr5 (1-152)||(4064796-4064949)
chr5 (65-153)||(34440691-34440779)
chr5 (46-133)||(38871609-38871697)
chr5 (85-213)||(38640700-38640833)
chr5 (46-122)||(38372247-38372324)
chr5 (1-122)||(27212600-27212723)
chr5 (85-153)||(24203759-24203827)
chr5 (387-423)||(26319416-26319452)
chr5 (46-129)||(28083477-28083561)
chr5 (167-217)||(28445415-28445465)
chr5 (1-35)||(34440636-34440670)
chr5 (4-105)||(31929229-31929331)
chr5 (52-131)||(26095035-26095115)
chr5 (85-152)||(29862590-29862657)
chr5 (53-146)||(15957694-15957788)
chr5 (167-217)||(16429133-16429183)
chr5 (65-154)||(37183856-37183946)
chr5 (160-217)||(8739198-8739255)
chr5 (160-217)||(38640988-38641045)
chr5 (52-99)||(32842101-32842149)
[»] chr2 (20 HSPs)
chr2 (65-423)||(33366923-33367266)
chr2 (1-150)||(36949018-36949169)
chr2 (46-152)||(17474870-17474977)
chr2 (46-152)||(45153862-45153969)
chr2 (67-213)||(25715362-25715510)
chr2 (46-127)||(39447138-39447220)
chr2 (51-152)||(15995184-15995287)
chr2 (46-129)||(25217884-25217968)
chr2 (65-152)||(36874980-36875068)
chr2 (46-217)||(9847425-9847603)
chr2 (56-129)||(4268332-4268406)
chr2 (160-217)||(9847217-9847274)
chr2 (46-129)||(33452537-33452621)
chr2 (46-152)||(44465798-44465906)
chr2 (46-152)||(32187940-32188047)
chr2 (46-127)||(41510524-41510606)
chr2 (71-152)||(42894378-42894460)
chr2 (46-128)||(34517077-34517159)
chr2 (46-131)||(5507392-5507480)
chr2 (65-152)||(41854970-41855058)
[»] chr8 (21 HSPs)
chr8 (217-423)||(16704916-16705120)
chr8 (46-153)||(31519967-31520075)
chr8 (46-217)||(7971002-7971180)
chr8 (46-217)||(41530645-41530824)
chr8 (46-152)||(3094657-3094764)
chr8 (46-152)||(27928017-27928124)
chr8 (1-153)||(21004320-21004473)
chr8 (46-152)||(44106199-44106306)
chr8 (46-146)||(8885535-8885636)
chr8 (160-217)||(24627666-24627723)
chr8 (46-152)||(37248534-37248641)
chr8 (50-122)||(34853309-34853382)
chr8 (46-128)||(16310575-16310658)
chr8 (46-162)||(36404222-36404337)
chr8 (51-122)||(28916764-28916836)
chr8 (85-217)||(31234739-31234876)
chr8 (52-131)||(35676635-35676715)
chr8 (46-152)||(42280967-42281077)
chr8 (167-217)||(31234528-31234578)
chr8 (85-146)||(40994808-40994869)
chr8 (65-129)||(11698385-11698450)
[»] scaffold0137 (1 HSPs)
scaffold0137 (46-152)||(9573-9680)
[»] chr7 (21 HSPs)
chr7 (47-153)||(8154876-8154983)
chr7 (46-152)||(43737100-43737207)
chr7 (46-152)||(24042264-24042371)
chr7 (56-152)||(19225674-19225771)
chr7 (1-152)||(42925717-42925870)
chr7 (46-153)||(47202470-47202578)
chr7 (46-152)||(3936084-3936191)
chr7 (46-152)||(28230544-28230651)
chr7 (51-152)||(37518371-37518473)
chr7 (1-90)||(28346078-28346167)
chr7 (46-129)||(36408347-36408431)
chr7 (1-133)||(3304853-3304988)
chr7 (47-133)||(33574129-33574216)
chr7 (46-153)||(36629181-36629289)
chr7 (46-152)||(6467671-6467780)
chr7 (46-152)||(36468613-36468719)
chr7 (167-216)||(5730987-5731036)
chr7 (1-129)||(31642971-31643101)
chr7 (65-153)||(33151201-33151292)
chr7 (85-152)||(31985594-31985661)
chr7 (165-213)||(5731199-5731247)
[»] chr3 (33 HSPs)
chr3 (58-152)||(34821419-34821514)
chr3 (46-199)||(48303967-48304127)
chr3 (51-152)||(39149791-39149892)
chr3 (46-153)||(47301995-47302103)
chr3 (46-152)||(51258378-51258485)
chr3 (1-152)||(3902882-3903035)
chr3 (51-153)||(35142055-35142158)
chr3 (46-217)||(45244365-45244539)
chr3 (46-133)||(3937364-3937452)
chr3 (54-152)||(47740008-47740107)
chr3 (51-152)||(38977824-38977926)
chr3 (56-129)||(501240-501314)
chr3 (85-219)||(32024999-32025139)
chr3 (51-111)||(33438503-33438564)
chr3 (46-129)||(51540713-51540797)
chr3 (1-129)||(2358721-2358852)
chr3 (46-152)||(50716228-50716335)
chr3 (46-152)||(50796512-50796619)
chr3 (46-122)||(3352172-3352249)
chr3 (160-213)||(45244691-45244744)
chr3 (65-122)||(52777226-52777283)
chr3 (46-112)||(34821512-34821579)
chr3 (1-128)||(49096327-49096455)
chr3 (46-209)||(44085434-44085605)
chr3 (46-152)||(46622860-46622968)
chr3 (160-213)||(8735278-8735331)
chr3 (168-217)||(8735493-8735542)
chr3 (160-213)||(9087519-9087572)
chr3 (168-217)||(9087734-9087783)
chr3 (1-38)||(30722002-30722039)
chr3 (100-153)||(43473044-43473097)
chr3 (46-98)||(47123082-47123135)
chr3 (46-98)||(47130448-47130501)
[»] chr6 (16 HSPs)
chr6 (1-153)||(32035043-32035197)
chr6 (1-152)||(5699488-5699641)
chr6 (46-152)||(17264386-17264493)
chr6 (1-127)||(33413448-33413575)
chr6 (46-133)||(7412804-7412892)
chr6 (46-152)||(24604438-24604545)
chr6 (53-152)||(14587636-14587736)
chr6 (169-217)||(17500967-17501015)
chr6 (46-152)||(23406772-23406879)
chr6 (57-120)||(3717391-3717455)
chr6 (46-144)||(4508386-4508485)
chr6 (46-152)||(2813300-2813409)
chr6 (52-131)||(9905100-9905180)
chr6 (167-217)||(17501175-17501225)
chr6 (46-90)||(1945668-1945712)
chr6 (86-122)||(5638879-5638915)
[»] chr4 (26 HSPs)
chr4 (46-129)||(29822603-29822687)
chr4 (1-153)||(49396946-49397100)
chr4 (51-127)||(17933238-17933315)
chr4 (1-129)||(32441749-32441879)
chr4 (65-153)||(34972867-34972956)
chr4 (46-154)||(48319139-48319247)
chr4 (46-153)||(23523890-23523998)
chr4 (1-152)||(38536108-38536261)
chr4 (46-151)||(6003748-6003856)
chr4 (51-152)||(46440350-46440452)
chr4 (1-120)||(6228919-6229040)
chr4 (46-152)||(3703326-3703433)
chr4 (46-152)||(19835504-19835611)
chr4 (46-152)||(25539024-25539131)
chr4 (1-131)||(38416503-38416635)
chr4 (46-146)||(7931642-7931743)
chr4 (56-152)||(25491471-25491568)
chr4 (53-133)||(25752539-25752620)
chr4 (46-154)||(54631537-54631646)
chr4 (46-152)||(2506107-2506215)
chr4 (46-152)||(40703648-40703755)
chr4 (57-152)||(8106387-8106483)
chr4 (46-108)||(50392529-50392592)
chr4 (167-217)||(25140725-25140775)
chr4 (51-111)||(53894108-53894169)
chr4 (167-219)||(42660383-42660435)
[»] scaffold0027 (1 HSPs)
scaffold0027 (54-152)||(142039-142138)
[»] scaffold0508 (1 HSPs)
scaffold0508 (56-129)||(3494-3568)
[»] scaffold0182 (1 HSPs)
scaffold0182 (46-152)||(23098-23205)
[»] scaffold0016 (1 HSPs)
scaffold0016 (160-217)||(205816-205873)


Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 65 - 423
Target Start/End: Complemental strand, 30829629 - 30829277
Alignment:
Q  65 attttgtaatccagaaacttaaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccattttttctatggtgcaa 164  Q
    |||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||| |||||||||| | ||| |||||| ||||||| |||||||||    
T  30829629 attttgtaatccggaaacttcaaaaatagggcgcgttacatgatgttttcggattacataatccgaaaaccccctaaacacccttttttccatggtgcaa 30829530  T
Q  165 tccggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgtaataatagtttcatatcacatttgccttcatgtattgttactagttctc 264  Q
    |||  ||||||||||||||||| |||||||||| | ||| ||||||||||||| |   ||||||||||||||||||||||||||||||||||||||||||    
T  30829529 tccaaattacgtaatccggacagcaccagcaccgattctgaacatgtttgtaaca---gtttcatatcacatttgccttcatgtattgttactagttctc 30829433  T
Q  265 tttgtgcttgtgttgatgtatgattgaagtactttgttgccttctgttaattgttgttctgtgtgacaagttgacaaaatgacatattttgtgtatctga 364  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||   |||||||||||||||| ||||||||||||||||||||| |||    
T  30829432 tttgtgcttgtgttgatgtatgattgaagtactttgttgtcttctgttaattgtt---ctgtgtgacaagttgataaaatgacatattttgtgtatatga 30829336  T
Q  365 ctaacctaaatctttgttgaatcctcatgatatgaatcaaaatgattctgtttgccttc 423  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30829335 ctaacctaaatctttgttgaatcctcatgatatgaatcaaaatgattctgtttgccttc 30829277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 65 - 423
Target Start/End: Complemental strand, 24471478 - 24471125
Alignment:
Q  65 attttgtaatccagaaacttaaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcc-tgaacaccattttttctatggtgca 163  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||| |||||||||| | || | |||||| ||||||| |||||| |    
T  24471478 attttgtaatccagaaacttcaaaaatagggcgcgttacatgatgtttccggattacataatccgaaaacccccctaaacacccttttttccatggtgta 24471379  T
Q  164 atccggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgtaataatagtttcatatcacatttgccttcatgtattgttactagttct 263  Q
    |||||||||||||||| |||||| |||||||| ||| ||| ||||||||||||| |   |||||||||||||||||||||||||||||||||||||||||    
T  24471378 atccggattacgtaattcggacagcaccagcatcaattctgaacatgtttgtaaca---gtttcatatcacatttgccttcatgtattgttactagttct 24471282  T
Q  264 ctttgtgcttgtgttgatgtatgattgaagtactttgttgccttctgttaattgttgttctgtgtgacaagttgacaaaatgacatattttgtgtatctg 363  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||   || ||||||||||||| ||||||||||||||||||||| ||    
T  24471281 ctttgtgcttgtgttcatgtatgattgaagtactttgttgtcttctgttaattgtt---ctatgtgacaagttgataaaatgacatattttgtgtatatg 24471185  T
Q  364 actaacctaaatctttgttgaatcctcatgatatgaatcaaaatgattctgtttgccttc 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24471184 actaacctaaatctttgttgaatcctcatgatatgaatcaaaatgattctgtttgccttc 24471125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 46 - 217
Target Start/End: Complemental strand, 43319379 - 43319201
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaa-cttaaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    |||||||||||||||||| |||||||||||| |||| || ||||||||  |||||||||||||| ||||||||||||| |||||||||| | ||| ||||    
T  43319379 gagttacggatttttccggattttgtaatccggaaatctaaaaaaatatggcgcgttacatgattttttcggattacataatccgaaaaccccctaaaca 43319280  T
Q  145 ccattttttctatgg------tgcaatccggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgtaa 217  Q
    |  ||||||  ||||      ||||||||||||||||||||||||||| ||||| |||||| ||| |||||||||||||    
T  43319279 ctctttttttcatggtgctgatgcaatccggattacgtaatccggacagcaccatcaccaattctgaacatgtttgtaa 43319201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 18583773 - 18583619
Alignment:
Q  1 ttcataatctgaaatgatgttttcctttgttatagagtnnnnnnnga-gttacggatttttccgaattttgtaatccagaaacttaaaaaa-tagagcgc 98  Q
    ||||||||| | |||| |||||||||||||||||| ||       || |||||||| ||||||| |||||||||||  ||||||||||||| ||| ||||    
T  18583773 ttcataatccggaatggtgttttcctttgttatagggtgaaaaatgaagttacggacttttccggattttgtaatctggaaacttaaaaaaatagggcgc 18583674  T
Q  99 gttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccatttttt 153  Q
    |||||||||||||||||||||||| |||||| ||| | ||| |||||| ||||||    
T  18583673 gttacatgatgttttcggattacataatccggaaaccccctaaacaccttttttt 18583619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 54 - 135
Target Start/End: Complemental strand, 44573271 - 44573189
Alignment:
Q  54 gatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatc 135  Q
    ||||||| || |||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||| |||||| |||||    
T  44573271 gattttttcggattttgtaatccggaaacttcaaaaaatagggcgcgttacatgatgttttcggattacataatccggaaatc 44573189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 43319047 - 43318990
Alignment:
Q  160 tgcaatccggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgtaa 217  Q
    ||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||    
T  43319047 tgcaatccggattacgtaatctggacaacaccagcaccaattctgaacatgtttgtaa 43318990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 153
Target Start/End: Complemental strand, 33611593 - 33611485
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    ||||||||||||||| || ||||||||||   ||||||| ||||||||| |||||||||||||||||| ||||||||| |||| | ||| | ||| ||||    
T  33611593 gagttacggattttttcggattttgtaatttggaaacttcaaaaaatagggcgcgttacatgatgtttccggattacataatctggaaaccccctaaaca 33611494  T
Q  145 ccatttttt 153  Q
    || ||||||    
T  33611493 ccctttttt 33611485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 153
Target Start/End: Complemental strand, 40908117 - 40908009
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    |||| ||||||||||  |||||||| ||||| ||||||| ||||||| | ||| | |||||||||||||||||||||| |||||||||| | ||| ||||    
T  40908117 gagtaacggattttttagaattttgcaatccggaaacttcaaaaaattgggcgtgctacatgatgttttcggattacataatccgaaaaccccctaaaca 40908018  T
Q  145 ccatttttt 153  Q
    || ||||||    
T  40908017 ccctttttt 40908009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 23442714 - 23442789
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggatta 120  Q
    |||||||||||||||||| ||||| |||||  ||||||| ||||||||| |||||||||||||||||| |||||||    
T  23442714 gagttacggatttttccggattttataatctggaaacttcaaaaaatagggcgcgttacatgatgtttccggatta 23442789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 32817794 - 32817687
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    |||| |||| |||||||  |||||||||||| ||||||| ||||||||| |||| ||||||||||||| | ||||||| |||||||||| | ||| ||||    
T  32817794 gagtaacgggtttttccagattttgtaatccggaaacttcaaaaaatagggcgcattacatgatgtttccagattacataatccgaaaaccccctaaaca 32817695  T
Q  145 ccattttt 152  Q
    || |||||    
T  32817694 cccttttt 32817687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 51 - 133
Target Start/End: Original strand, 42545948 - 42546031
Alignment:
Q  51 acggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaa 133  Q
    ||||||||||||| |||||||||||| ||||||| |||||||||  ||||||||||||||||| ||||| |||  |||||||||    
T  42545948 acggatttttccggattttgtaatccggaaacttcaaaaaataggacgcgttacatgatgtttccggataacatgatccgaaaa 42546031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 45568059 - 45567952
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    |||| |||| ||||||||||||||||||| | ||||||| ||||||||| ||||| |||||||| |||| ||||||||  ||||||||| | ||| ||||    
T  45568059 gagtaacgggtttttccgaattttgtaattcggaaacttcaaaaaatagggcgcgctacatgatatttttggattacatgatccgaaaaccccctaaaca 45567960  T
Q  145 ccattttt 152  Q
    || |||||    
T  45567959 cccttttt 45567952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 56 - 152
Target Start/End: Complemental strand, 34162894 - 34162797
Alignment:
Q  56 tttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccattttt 152  Q
    |||||||| |||||||||||| ||||||| ||||||||| ||| |||| ||||||||| ||||||||| |||||| ||| | ||| |||||| |||||    
T  34162894 tttttccggattttgtaatccggaaacttcaaaaaatagggcgtgttagatgatgtttccggattacataatccggaaaccccctaaacacccttttt 34162797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 46 - 131
Target Start/End: Complemental strand, 6223921 - 6223834
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt--aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaa 131  Q
    ||||||||||||||| ||||||||  |||||  ||||||  |||||||||||||| ||||||||| |||| |||||||| ||||||||    
T  6223921 gagttacggattttttcgaatttttcaatccgaaaacttcaaaaaaatagagcgcattacatgatttttttggattacataatccgaa 6223834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 9445945 - 9445897
Alignment:
Q  168 ggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgta 216  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  9445945 ggattacgtaatccggacaacaccagcaccaattctaaacatctttgta 9445897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 46 - 129
Target Start/End: Original strand, 49786245 - 49786329
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccg 129  Q
    |||||| ||||||||||| |||||| |||||  |||||| |||||||||  ||||||||||||||||| ||||||||| ||||||    
T  49786245 gagttatggatttttccggattttgcaatccgaaaactttaaaaaataggacgcgttacatgatgtttccggattacataatccg 49786329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 40650858 - 40650751
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    |||| |||||||||| || | |||||||||| ||||||| ||||||||| ||| ||||||||||||||  |||||||| |||||| ||| | | | ||||    
T  40650858 gagtaacggattttttcggaatttgtaatccggaaacttcaaaaaatagggcgtgttacatgatgtttctggattacataatccggaaaccccttaaaca 40650759  T
Q  145 ccattttt 152  Q
    ||||||||    
T  40650758 ccattttt 40650751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 128
Target Start/End: Original strand, 49677475 - 49677542
Alignment:
Q  62 cgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatcc 128  Q
    ||||||||||||||  ||||||| ||||||||| |||||||||||||||||| ||||||||| |||||    
T  49677475 cgaattttgtaatctggaaacttcaaaaaatagggcgcgttacatgatgtttccggattacataatcc 49677542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 800652 - 800603
Alignment:
Q  167 cggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgta 216  Q
    |||||||||||||||||||||||||| |||||| || |||||||||||||    
T  800652 cggattacgtaatccggacaacaccaacaccaattcaaaacatgtttgta 800603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 129
Target Start/End: Complemental strand, 41584852 - 41584769
Alignment:
Q  47 agttacggatttttccgaattttgtaatccagaaacttaaaaaa-tagagcgcgttacatgatgttttcggattacacaatccg 129  Q
    |||||||| |||||| | |||||||||||| |||| || ||||| ||| ||  |||||||||||||||||||||||| ||||||    
T  41584852 agttacgggtttttctggattttgtaatccggaaatttcaaaaactagggcatgttacatgatgttttcggattacataatccg 41584769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 28866806 - 28866732
Alignment:
Q  53 ggatttttccgaattttgtaatccagaaacttaaaaaatagagcgcgttacatgatgttttcggattacacaatc 127  Q
    ||||||||||| |||||||||||| |||   |||||||||| ||||| |||||||| ||| ||||||||| ||||    
T  28866806 ggatttttccggattttgtaatccggaactataaaaaatagggcgcgctacatgatttttccggattacataatc 28866732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 52745000 - 52744931
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttc 114  Q
    |||| |||||||||||||||||||||||||   |||||| ||||||||| ||||| |||||||| |||||    
T  52745000 gagtaacggatttttccgaattttgtaatctgaaaacttcaaaaaatagggcgcgctacatgatattttc 52744931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 129
Target Start/End: Complemental strand, 15070025 - 15069941
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccg 129  Q
    |||| |||||| ||| || |||||||||||| ||||||| |||||||||  || |||||||||||||| ||||||| | ||||||    
T  15070025 gagtaacggatattttcggattttgtaatccggaaacttcaaaaaataggacgtgttacatgatgtttccggattatataatccg 15069941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 128
Target Start/End: Original strand, 32542391 - 32542455
Alignment:
Q  65 attttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatcc 128  Q
    |||||||||||| ||| ||| ||||||||| | |||||||||||||||| ||||||||| |||||    
T  32542391 attttgtaatccggaatcttcaaaaaatagggtgcgttacatgatgtttacggattacataatcc 32542455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 152
Target Start/End: Original strand, 17000355 - 17000461
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaacttaaaa-aatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    ||||||||| |||||||| |||||||||| | ||||| | ||| ||||| || ||||| |||||||||  |||||||| |||||| ||| | ||| ||||    
T  17000355 gagttacgg-tttttccggattttgtaattcggaaacatcaaataatagggcacgttagatgatgtttctggattacataatccggaaaccccctaaaca 17000453  T
Q  145 ccattttt 152  Q
    ||||||||    
T  17000454 ccattttt 17000461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 133
Target Start/End: Original strand, 38950286 - 38950333
Alignment:
Q  86 aaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaa 133  Q
    |||||||| |||||||||||||| ||||| ||||||| ||||||||||    
T  38950286 aaaaatagggcgcgttacatgattttttcagattacataatccgaaaa 38950333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 146
Target Start/End: Complemental strand, 45047033 - 45046933
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    |||| ||||||||||||| ||||||||||||  |||||| |||||| || || | ||||||||||||| || |||||| |||||| ||| | ||| ||||    
T  45047033 gagtaacggatttttccggattttgtaatccgaaaacttcaaaaaagagggc-cattacatgatgtttccgaattacataatccggaaaccccctaaaca 45046935  T
Q  145 cc 146  Q
    ||    
T  45046934 cc 45046933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 46 - 423
Target Start/End: Complemental strand, 37095097 - 37094722
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaacttaaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaacac 145  Q
    |||||||||||||||||| ||||||||||||  ||||||||||||||  |||||||||||||||||| ||||||||  |||||||||| | | | |||||    
T  37095097 gagttacggatttttccggattttgtaatccgaaaacttaaaaaataaggcgcgttacatgatgtttccggattaccaaatccgaaaacc-cttaaacac 37094999  T
Q  146 cattttttctatggtgcaatccggattacgtaatccggacaaca------ccagcaccaaatctaaacatgtttgtaataatagtttcatatcacatttg 239  Q
    | ||||||| ||||||||||||||||||||||||||| ||| ||      |||||||||| ||| ||||||||||||| |   |||||||||||||||||    
T  37094998 ccttttttccatggtgcaatccggattacgtaatccgaacagcaactgcaccagcaccaattctgaacatgtttgtaaca---gtttcatatcacatttg 37094902  T
Q  240 ccttcatgtattgttactagttctctttgtgcttgtgttgatgtatgattgaagtactttgttgccttctgttaattgttgttctgtgtgacaagttgac 339  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   ||||||||||||||||||||     
T  37094901 ctttcatgtattgttactagttctctttgtgcttgtgttgatgtatgattgaagtactttgttgtcttctgttaat---tgttctgtgtgacaagttga- 37094806  T
Q  340 aaaatgacatattttgtgtatctgactaacctaaatctttgttgaatcctcatgatatgaatcaaaatgattctgtttgccttc 423  Q
     |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37094805 taaatgacatattttgtgtatataactaacctaaatctttgttgaatcctcatgatatgaatcaaaatgattctgtttgccttc 37094722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 46 - 380
Target Start/End: Original strand, 26319056 - 26319384
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaacttaaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaacac 145  Q
    |||||||||||||||||| ||||||| |||| |||||||  ||||||| | |||||||||||||||| ||||||||| |||||||||| | ||| |||||    
T  26319056 gagttacggatttttccggattttgttatccggaaacttccaaaatagggtgcgttacatgatgtttccggattacataatccgaaaaccccctaaacac 26319155  T
Q  146 cattttttctatggtgcaatccggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgtaataatagtttcatatcacatttgccttca 245  Q
    | ||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||   ||| ||||||||||||||||| ||||||    
T  26319156 ccttttttccatggtgcaatccggattacgtaatccgtacagcaccagcaccaaatctgaacatgtttg---taacagtttcatatcacatttaccttca 26319252  T
Q  246 tgtattgttactagttctctttgtgcttgtgttgatgtatgattgaagtactttgttgccttctgttaattgttgttctgtgtgacaagttgacaaaatg 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||   ||||||||||||||||||||| ||||||    
T  26319253 tgtattgttactagttctctttgtgcttgtgttgatgtatgattgaagtactttgttatcttctattaa---ttgttctgtgtgacaagttgataaaatg 26319349  T
Q  346 acatattttgtgtatctgactaacctaaatctttg 380  Q
    ||||||||||||||| |||||||||||||||||||    
T  26319350 acatattttgtgtatatgactaacctaaatctttg 26319384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 46 - 153
Target Start/End: Original strand, 25746964 - 25747071
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaacttaaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaacac 145  Q
    |||| ||||||||||||| ||||| |||||| ||||||| |||||||| |||||||||||||||||||||||||||| |||||| ||||| ||| |||||    
T  25746964 gagtaacggatttttccggattttctaatccggaaacttcaaaaatagggcgcgttacatgatgttttcggattacataatccggaaatcccctaaacac 25747063  T
Q  146 catttttt 153  Q
    ||||||||    
T  25747064 catttttt 25747071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 46 - 152
Target Start/End: Original strand, 15799163 - 15799270
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    ||||||||| |||||||| |||||||||||| ||||||| ||||||||| |||||||||||||||||| ||||||||| |||||||||| | ||| ||||    
T  15799163 gagttacgggtttttccggattttgtaatccggaaacttcaaaaaatagggcgcgttacatgatgtttccggattacataatccgaaaaccccctaaaca 15799262  T
Q  145 ccattttt 152  Q
    || |||||    
T  15799263 cccttttt 15799270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 46 - 146
Target Start/End: Original strand, 6156669 - 6156770
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    ||||||||| |||||||| |||||||||||| ||||||| ||||||||| |||||||||||||||||| ||||||||| |||||| ||| | ||| ||||    
T  6156669 gagttacgggtttttccggattttgtaatccggaaacttcaaaaaatagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaaca 6156768  T
Q  145 cc 146  Q
    ||    
T  6156769 cc 6156770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 26190481 - 26190404
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattaca 122  Q
    |||||||||||||||||| |||||||||||| ||||||| ||||||||| | ||||||||||||||||||||||||||    
T  26190481 gagttacggatttttccggattttgtaatccggaaacttcaaaaaatagggtgcgttacatgatgttttcggattaca 26190404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 65 - 152
Target Start/End: Original strand, 14111854 - 14111942
Alignment:
Q  65 attttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccattttt 152  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||| |||| ||||||| ||| |||||| |||||    
T  14111854 attttgtaatccagaaacttcaaaaaatagggcgcgttacatgatgtttttggattacataatctgaaaatcccctaaacacccttttt 14111942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 46 - 199
Target Start/End: Complemental strand, 36359769 - 36359608
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaa-cttaaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    |||||||||| |||| || ||||||||||||||||| || |||||||||  ||||| ||||||| ||||||||||||| |||| ||||| | ||| ||||    
T  36359769 gagttacggaatttttcggattttgtaatccagaaatctcaaaaaataggacgcgtaacatgattttttcggattacataatctgaaaaccccctaaaca 36359670  T
Q  145 ccattttttct-atgg------tgcaatccggattacgtaatccggacaacaccagcaccaa 199  Q
    || |||||| | ||||      |||||||| ||||||||||||| |||||||||| ||||||    
T  36359669 cctttttttttcatggtgttgatgcaatccagattacgtaatccagacaacaccatcaccaa 36359608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 46 - 129
Target Start/End: Original strand, 33487548 - 33487632
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccg 129  Q
    ||||||||| |||||||||||||||||||||  |||||| ||||||||| |||||||| ||||||||||||| ||||| ||||||    
T  33487548 gagttacgggtttttccgaattttgtaatccgaaaacttcaaaaaatagggcgcgttatatgatgttttcgggttacataatccg 33487632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 53 - 152
Target Start/End: Original strand, 39524721 - 39524821
Alignment:
Q  53 ggatttttccgaattttgtaatccagaaacttaaaaaa-tagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccatttt 151  Q
    ||||||||||| |||||||||||| ||||||||||||| ||| ||| |||||||||||||||||||||||| ||| || ||| | ||| |||||| ||||    
T  39524721 ggatttttccggattttgtaatccggaaacttaaaaaaatagggcgtgttacatgatgttttcggattacataattcggaaaccccctaaacaccctttt 39524820  T
Q  152 t 152  Q
    |    
T  39524821 t 39524821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 46 - 120
Target Start/End: Complemental strand, 12465289 - 12465214
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggatta 120  Q
    |||||||||||||||||| |||||||||||| ||||||| ||||||||| ||| |||||||||||||| |||||||    
T  12465289 gagttacggatttttccggattttgtaatccggaaacttcaaaaaatagggcgtgttacatgatgtttccggatta 12465214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 46 - 152
Target Start/End: Original strand, 20891551 - 20891658
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    |||| ||||||||||||| |||||||||||| ||||||| ||||||||| ||  |||||||||||||| || |||||| |||||||||| | ||| ||||    
T  20891551 gagtaacggatttttccggattttgtaatccggaaacttcaaaaaatagggcatgttacatgatgtttccgaattacataatccgaaaaccccctaaaca 20891650  T
Q  145 ccattttt 152  Q
    || |||||    
T  20891651 cccttttt 20891658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 54 - 152
Target Start/End: Complemental strand, 40620165 - 40620066
Alignment:
Q  54 gatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccattttt 152  Q
    |||||||||| |||||||||||| ||||||| ||||||||| || ||||| ||||||||||||||||||| |||||| ||| | ||| |||| |||||||    
T  40620165 gatttttccggattttgtaatccggaaacttcaaaaaatagggcacgttatatgatgttttcggattacataatccggaaaccccctaaacatcattttt 40620066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 38692955 - 38692881
Alignment:
Q  56 tttttccgaattttgtaatccagaaacttaa-aaaatagagcgcgttacatgatgttttcggattacacaatccg 129  Q
    ||||||||||||||||||||| ||||||||| ||||||| ||||||||| |||||||| ||||||||| ||||||    
T  38692955 tttttccgaattttgtaatccggaaacttaaaaaaatagggcgcgttacgtgatgtttccggattacataatccg 38692881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 4064949 - 4064796
Alignment:
Q  1 ttcataatctgaaatgatgttttcctttgttatagagtnnnnnnng-agttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgc 98  Q
    ||||||||| | |||| |||||||||||||||||| ||       | |||||||| |||||||| ||| |||||||| ||||||| ||||||||| |||     
T  4064949 ttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttacgggtttttccggattatgtaatccggaaactttaaaaaatagggcgt 4064850  T
Q  99 gttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccattttt 152  Q
    |||| ||||||||| ||||||||| |||||| ||| | ||| |||||| |||||    
T  4064849 gttagatgatgtttccggattacataatccggaaaccccctaaacacccttttt 4064796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 65 - 153
Target Start/End: Original strand, 34440691 - 34440779
Alignment:
Q  65 attttgtaatccagaaacttaaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccatttttt 153  Q
    ||||||||||||  |||||| ||||||||  |||||||||||||||||||||||| || |||||||||| | ||| |||||| ||||||    
T  34440691 attttgtaatccgaaaacttcaaaaataggacgcgttacatgatgttttcggattgcataatccgaaaaccccctaaacaccctttttt 34440779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 133
Target Start/End: Original strand, 38871609 - 38871697
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaacttaa-aaaatagagcgcgttacatgatgttttcggattacacaatccgaaaa 133  Q
    |||| ||||||||||||| ||||||||||||  |||||| | ||||||| | |||||||||||||||| ||||||||| ||||||||||    
T  38871609 gagtaacggatttttccggattttgtaatccgaaaacttcataaaatagggggcgttacatgatgtttccggattacataatccgaaaa 38871697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 85 - 213
Target Start/End: Original strand, 38640700 - 38640833
Alignment:
Q  85 aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccattttttctatggtgc------aatccggattacgtaa 178  Q
    ||||||||| |||||||| ||||| | ||||||||||| |||||||| | | ||| |||||| ||||||  |||||||      ||||||||||||||||    
T  38640700 aaaaaatagggcgcgttaaatgatttattcggattacataatccgaacacc-cctaaacaccctttttttcatggtgctgatgcaatccggattacgtaa 38640798  T
Q  179 tccggacaacaccagcaccaaatctaaacatgttt 213  Q
    |||||||| ||||| |||||| ||| |||||||||    
T  38640799 tccggacagcaccaacaccaattctgaacatgttt 38640833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 38372247 - 38372324
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattaca 122  Q
    |||| ||||||||||| | |||||||||||| ||||||| ||||||||| ||| |||||||||||||| |||||||||    
T  38372247 gagtaacggatttttctggattttgtaatccggaaacttaaaaaaatagggcgggttacatgatgtttccggattaca 38372324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 27212600 - 27212723
Alignment:
Q  1 ttcataatctgaaatgatgttttcctttgttatagagtnnnnnnn-gagttacggatttttccgaattttgtaatccagaaa-cttaaaaaatagagcgc 98  Q
    ||||||||| ||| ||||||||||||||||||||| ||        ||||||||| ||||| || ||||||||||||  ||| || ||||||||| | ||    
T  27212600 ttcataatccgaactgatgttttcctttgttatagggtgaaaaaatgagttacgggttttttcggattttgtaatccgaaaatctcaaaaaatagggtgc 27212699  T
Q  99 gttacatgatgttttcggattaca 122  Q
    |||||||||| |||||||||||||    
T  27212700 gttacatgattttttcggattaca 27212723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 153
Target Start/End: Complemental strand, 24203827 - 24203759
Alignment:
Q  85 aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccatttttt 153  Q
    ||||||||| |||||||||||||||||| ||||||||| |||||| ||| | ||| |||||| ||||||    
T  24203827 aaaaaatagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacaccctttttt 24203759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 423
Target Start/End: Original strand, 26319416 - 26319452
Alignment:
Q  387 cctcatgatatgaatcaaaatgattctgtttgccttc 423  Q
    |||||||||||||||||||||||||||||||||||||    
T  26319416 cctcatgatatgaatcaaaatgattctgtttgccttc 26319452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 129
Target Start/End: Complemental strand, 28083561 - 28083477
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccg 129  Q
    |||| |||| |||||||| |||||||||||| |||| || ||||||||| |||| ||||||||| ||| ||||||||| ||||||    
T  28083561 gagtaacgggtttttccggattttgtaatccggaaaattcaaaaaatagggcgcattacatgatatttccggattacataatccg 28083477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 28445465 - 28445415
Alignment:
Q  167 cggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgtaa 217  Q
    |||||||||||||||||||| ||||||||| || ||| |||||||||||||    
T  28445465 cggattacgtaatccggacatcaccagcacgaattctgaacatgtttgtaa 28445415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 34440636 - 34440670
Alignment:
Q  1 ttcataatctgaaatgatgttttcctttgttatag 35  Q
    |||||||||||||||||||||||||||||||||||    
T  34440636 ttcataatctgaaatgatgttttcctttgttatag 34440670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 31929331 - 31929229
Alignment:
Q  4 ataatctgaaatgatgttttcctttgttatagagtnnnnnnngagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgtta 102  Q
    |||||| | |||||||||||| ||||||| || ||       |||| ||||||||||||| ||||||||||||||||| || ||||||||| |||| |||    
T  31929331 ataatccggaatgatgttttcttttgttaaagggtgaaaaatgagtaacggatttttccggattttgtaatccagaaatttcaaaaaatagggcgcatta 31929232  T
Q  103 cat 105  Q
    |||    
T  31929231 cat 31929229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 131
Target Start/End: Original strand, 26095035 - 26095115
Alignment:
Q  52 cggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaa 131  Q
    ||||||||| |  ||||||||||||| ||||   |||||||||||||||||||||  | ||||||||||||| ||||||||    
T  26095035 cggattttttctgattttgtaatccaaaaaccacaaaaaatagagcgcgttacatatttttttcggattacataatccgaa 26095115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 29862590 - 29862657
Alignment:
Q  85 aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccattttt 152  Q
    ||||||||| ||||||||  |||||||| ||||||||| |||||| ||| | ||| ||||||||||||    
T  29862590 aaaaaatagggcgcgttaggtgatgtttccggattacataatccggaaaccccctaaacaccattttt 29862657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 146
Target Start/End: Original strand, 15957694 - 15957788
Alignment:
Q  53 ggatttttccgaattttgtaatccagaaactta-aaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaacacc 146  Q
    ||||||||||| |||||||||| | |||||||  |||||||| |||  ||||||||||||| ||||||| | |||||| ||| | ||| ||||||    
T  15957694 ggatttttccggattttgtaattcggaaacttcgaaaaatagggcgtattacatgatgtttccggattaaataatccggaaaccccctaaacacc 15957788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 16429133 - 16429183
Alignment:
Q  167 cggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgtaa 217  Q
    |||||||||||||||  ||| ||||| |||||| |||||||||||||||||    
T  16429133 cggattacgtaatccaaacagcaccaacaccaattctaaacatgtttgtaa 16429183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 37183946 - 37183856
Alignment:
Q  65 attttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccattttttc 154  Q
    |||||||||||  ||||||| ||||||||| || ||||||||||| ||||| ||||||| |||||| ||| |  || |||||| |||||||    
T  37183946 attttgtaatcttgaaacttcaaaaaatagggcacgttacatgatattttcagattacataatccggaaaccctctaaacacccttttttc 37183856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 8739255 - 8739198
Alignment:
Q  160 tgcaatccggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgtaa 217  Q
    |||||| |||||||||||||||  ||  |||||||||||| ||| |||||||||||||    
T  8739255 tgcaattcggattacgtaatccaaactgcaccagcaccaattctgaacatgtttgtaa 8739198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 38640988 - 38641045
Alignment:
Q  160 tgcaatccggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgtaa 217  Q
    ||||||| ||||||| |||| |||||| ||||| |||||| ||| |||||||||||||    
T  38640988 tgcaatctggattacataattcggacagcaccaacaccaattctgaacatgtttgtaa 38641045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 32842149 - 32842101
Alignment:
Q  52 cggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcg 99  Q
    |||||||||||| |||||||||||| ||||||| ||||||||| |||||    
T  32842149 cggatttttccggattttgtaatccggaaacttcaaaaaatagggcgcg 32842101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 181; Significance: 1e-97; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 65 - 423
Target Start/End: Original strand, 33366923 - 33367266
Alignment:
Q  65 attttgtaatccagaaacttaaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccatttttt-ctatggtgca 163  Q
    ||||||||||||  |||||| |||||||   ||||||||||||| ||| ||||||||| |||||||||| | ||| |||||| |||||| | ||||||||    
T  33366923 attttgtaatccgaaaacttcaaaaataagacgcgttacatgatatttccggattacataatccgaaaacccccttaacaccttttttttccatggtgca 33367022  T
Q  164 atccggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgtaataatagtttcatatcacatttgccttcatgtattgttactagttct 263  Q
    | ||||||||||||||||||| | |||||||||||| ||| ||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||    
T  33367023 aaccggattacgtaatccggatagcaccagcaccaattctgaacatgtttgtaat---agtttcatatcacatttgccttcatgtattgttactagttct 33367119  T
Q  264 ctttgtgcttgtgttgatgtatgattgaagtactttgttgccttctgttaattgttgttctgtgtgacaagttgacaaaatgacatattttgtgtatctg 363  Q
    |||||||||||||||||||||||||||||||||||||||   |||||||||   |||||||| ||||||||| || ||||||||||||          ||    
T  33367120 ctttgtgcttgtgttgatgtatgattgaagtactttgttctattctgttaa---ttgttctgcgtgacaagtggataaaatgacatat----------tg 33367206  T
Q  364 actaacctaaatctttgttgaatcctcatgatatgaatcaaaatgattctgtttgccttc 423  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  33367207 actaacctaaatctttgttgaatcttcatgatatgaatcaaaatgattatgtttgccttc 33367266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 36949169 - 36949018
Alignment:
Q  1 ttcataatctgaaatgatgttttcctttgttatagagtnnnnnnng-agttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgc 98  Q
    ||||||||| | |||| |||||||||||||||||| ||       | ||||||||||||||||| |||||||||||   |||||| ||||||||| ||||    
T  36949169 ttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttacggatttttccggattttgtaatctgcaaacttcaaaaaatagggcgc 36949070  T
Q  99 gttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccattt 150  Q
    |||||||||||||||||||||||| |||||| ||| | ||| ||||||||||    
T  36949069 gttacatgatgttttcggattacataatccggaaaccccctaaacaccattt 36949018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 17474977 - 17474870
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    |||| ||||||||||||| |||||||||||| ||||||| ||||||||| |||||||||||||||||| ||||||||| |||||| ||| | ||| ||||    
T  17474977 gagtaacggatttttccggattttgtaatccggaaactttaaaaaatagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaaca 17474878  T
Q  145 ccattttt 152  Q
    | ||||||    
T  17474877 caattttt 17474870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 45153969 - 45153862
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    |||| |||| |||||| |||||||||||||  ||||||| ||||||||| |||||||||||||||||| ||||||||| |||||| ||| | ||| ||||    
T  45153969 gagtaacgggtttttctgaattttgtaatctggaaacttcaaaaaatagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaaca 45153870  T
Q  145 ccattttt 152  Q
    || |||||    
T  45153869 cccttttt 45153862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 67 - 213
Target Start/End: Original strand, 25715362 - 25715510
Alignment:
Q  67 tttgtaatccagaaa-cttaaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccattttttctatggtgc--- 162  Q
    ||||||||||| ||| || |||| |||| ||||||||| |||| ||||||||||||| |||||||| |       |||||||||||||  |||||||       
T  25715362 tttgtaatccaaaaatctcaaaagatagggcgcgttacctgattttttcggattacataatccgaacaca-----aacaccatttttttcatggtgctga 25715456  T
Q  163 ---aatccggattacgtaatccggacaacaccagcaccaaatctaaacatgttt 213  Q
       |||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  25715457 tgcaatccggattacgtaatccggacaacaccaacaccaattctaaacatgttt 25715510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 46 - 127
Target Start/End: Original strand, 39447138 - 39447220
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatc 127  Q
    |||| ||||||||||||| ||||||||||||  |||||| ||||||||| |||| ||||||||||||||||||||||| ||||    
T  39447138 gagtaacggatttttccggattttgtaatccgaaaacttcaaaaaatagggcgcattacatgatgttttcggattacataatc 39447220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 51 - 152
Target Start/End: Complemental strand, 15995287 - 15995184
Alignment:
Q  51 acggatttttccgaattttgtaatccagaaactt--aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccat 148  Q
    |||| |||||||| |||||||||||  |||||||  ||||||||| ||||||| |||||||||| ||||||||| |||||||||| | ||| |||||| |    
T  15995287 acgggtttttccggattttgtaatcgggaaacttcaaaaaaatagggcgcgttgcatgatgtttccggattacataatccgaaaaccccctaaacaccct 15995188  T
Q  149 tttt 152  Q
    ||||    
T  15995187 tttt 15995184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 129
Target Start/End: Complemental strand, 25217968 - 25217884
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccg 129  Q
    |||| |||||||||| || |||||||||||| ||||||| ||||||||| | |||||||||||||||| ||||||||| ||||||    
T  25217968 gagtaacggattttttcggattttgtaatccggaaacttcaaaaaatagggtgcgttacatgatgtttccggattacataatccg 25217884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 65 - 152
Target Start/End: Original strand, 36874980 - 36875068
Alignment:
Q  65 attttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccattttt 152  Q
    |||||||||||| ||||||| |||||||||  ||||||||||||||||| ||||||||| |||||| ||| |  |||||||||||||||    
T  36874980 attttgtaatccggaaacttcaaaaaataggacgcgttacatgatgtttccggattacataatccggaaaccctctgaacaccattttt 36875068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 46 - 217
Target Start/End: Complemental strand, 9847603 - 9847425
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaa-cttaaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    ||||||| |||||||||  ||||||||||||  ||| || ||||||| | |||||||||||||| |||||| |||||| |||||||| | |  |  ||||    
T  9847603 gagttactgatttttccagattttgtaatccgaaaatctcaaaaaattgggcgcgttacatgattttttcgtattacataatccgaacaccatccaaaca 9847504  T
Q  145 ccattttttctatgg------tgcaatccggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgtaa 217  Q
    || ||||||  ||||      ||||||| ||||||||||||| ||||| ||||| |||||| ||||||||| |||||||    
T  9847503 ccttttttttcatggtgctgatgcaatctggattacgtaatctggacagcaccaacaccaattctaaacatatttgtaa 9847425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 4268406 - 4268332
Alignment:
Q  56 tttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccg 129  Q
    ||||| || ||||||||||||| |||||| ||||||||| |||||||||||||||||| ||||||||| ||||||    
T  4268406 ttttttcggattttgtaatccaaaaacttcaaaaaatagggcgcgttacatgatgtttccggattacataatccg 4268332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 9847274 - 9847217
Alignment:
Q  160 tgcaatccggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgtaa 217  Q
    ||||||||||||||||||||| ||||||||||| |||||| ||| |||||||||||||    
T  9847274 tgcaatccggattacgtaatctggacaacaccaacaccaattctgaacatgtttgtaa 9847217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 46 - 129
Target Start/End: Complemental strand, 33452621 - 33452537
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccg 129  Q
    |||| ||||||||||| | |||||||||| | ||||||| ||||||||| |||||||||||||||||| ||||| ||| ||||||    
T  33452621 gagtaacggatttttctggattttgtaattcggaaacttcaaaaaatagggcgcgttacatgatgtttccggatcacataatccg 33452537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 44465906 - 44465798
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgat-gttttcggattacacaatccgaaaatcgcctgaac 143  Q
    |||| ||||||||||||| |||||||||||| ||||||| ||||||||| |||||||||||||| ||||  |||||||| | |||| ||| | ||| |||    
T  44465906 gagtaacggatttttccggattttgtaatccggaaacttcaaaaaatagggcgcgttacatgatagtttatggattacatactccggaaaccccctaaac 44465807  T
Q  144 accattttt 152  Q
    ||| |||||    
T  44465806 acccttttt 44465798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 32188047 - 32187940
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    |||| |||| |||||| | |||||||||||  ||||||| ||||||||| ||| |||||||||||||| ||||||||| |||||| ||| | ||  ||||    
T  32188047 gagtaacgggtttttctggattttgtaatctggaaacttcaaaaaatagggcgagttacatgatgtttccggattacataatccggaaacccccgaaaca 32187948  T
Q  145 ccattttt 152  Q
    ||||||||    
T  32187947 ccattttt 32187940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 46 - 127
Target Start/End: Complemental strand, 41510606 - 41510524
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatc 127  Q
    |||| ||||||||||||  |||| ||||||| ||||||| ||||||||| ||||||||||||||||||  |||||||| ||||    
T  41510606 gagtaacggatttttccagatttcgtaatccggaaacttcaaaaaatagggcgcgttacatgatgtttctggattacataatc 41510524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 42894378 - 42894460
Alignment:
Q  71 taatccagaaacttaaaaaa-tagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccattttt 152  Q
    |||||| ||||||||||||| |||  ||||||||||||||||| ||||||||| |||||| ||| | ||| ||||||||||||    
T  42894378 taatccggaaacttaaaaaaataggacgcgttacatgatgtttccggattacataatccggaaaccccctaaacaccattttt 42894460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 128
Target Start/End: Original strand, 34517077 - 34517159
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaa-cttaaaaaatagagcgcgttacatgatgttttcggattacacaatcc 128  Q
    |||||||| |||||| || ||||||||||| | ||| || ||||||||| |||||||||||||| ||||||||||||| |||||    
T  34517077 gagttacgaattttttcggattttgtaatcgaaaaatctcaaaaaatagggcgcgttacatgat-ttttcggattacataatcc 34517159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 46 - 131
Target Start/End: Original strand, 5507392 - 5507480
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatga--tgttttcggattacacaatccgaa 131  Q
    ||||||| ||||||| |||||||||||||||| |||||| ||||||||   ||||||||||||  | ||||||||||| | ||||||||    
T  5507392 gagttacagattttttcgaattttgtaatccaaaaacttcaaaaaataagacgcgttacatgattttttttcggattatataatccgaa 5507480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 152
Target Start/End: Complemental strand, 41855058 - 41854970
Alignment:
Q  65 attttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccattttt 152  Q
    |||||||||||| ||||||| ||||||||| | | |||||||||||||| |||||||||  ||||| ||| | ||| |||||| |||||    
T  41855058 attttgtaatccggaaacttcaaaaaatagggtgtgttacatgatgtttccggattacatgatccggaaaccccctaaacacccttttt 41854970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 128; Significance: 5e-66; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 217 - 423
Target Start/End: Complemental strand, 16705120 - 16704916
Alignment:
Q  217 ataatagtttcatatcacatttgccttcatgtattgttactagttctctttgtg--cttgtgttgatgtatgattgaagtactttgttgccttctgttaa 314  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||| ||||||||||||||||||||||| ||||| ||||    
T  16705120 ataacagtttcatatcacatttgccttcatgt-ttgttactagttctctttgtgtgcttgtgttggtgtatgattgaagtactttgttgtcttctattaa 16705022  T
Q  315 ttgttgttctgtgtgacaagttgacaaaatgacatattttgtgtatctgactaacctaaatctttgttgaatcctcatgatatgaatcaaaatgattctg 414  Q
    |||||   |||||||||| ||||| ||||||||||||||||||||| |||||||| |||||||||||||||||  |||||||||||||||||||||||||    
T  16705021 ttgtt---ctgtgtgacaggttgataaaatgacatattttgtgtatatgactaacttaaatctttgttgaatctccatgatatgaatcaaaatgattctg 16704925  T
Q  415 tttgccttc 423  Q
     || |||||    
T  16704924 gttaccttc 16704916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 46 - 153
Target Start/End: Complemental strand, 31520075 - 31519967
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    ||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||| ||| | ||| ||||    
T  31520075 gagttacggctttttccggattttgtaatccagaaacttcaaaaaatagagcgcgttacatgatgtttccggattacataatccggaaaccccctaaaca 31519976  T
Q  145 ccatttttt 153  Q
    || ||||||    
T  31519975 ccctttttt 31519967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 46 - 217
Target Start/End: Complemental strand, 7971180 - 7971002
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaacttaaaaaatagagcgcgttacatgatgttttc-ggattacacaatccgaaaatcgcctgaaca 144  Q
    |||||||||||||||||| |||||||||||  ||||||| ||||||||  |||| ||| |||||||||| |||||||| ||||| || | | | | ||||    
T  7971180 gagttacggatttttccggattttgtaatctggaaacttcaaaaataggacgcgctacgtgatgttttctggattacataatccaaacaccccataaaca 7971081  T
Q  145 ccattttttctatggtgc------aatccggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgtaa 217  Q
    || ||||||| |||||||      |||||||||||||||||||||||| |||||||| ||| ||| |||||||||||||    
T  7971080 cccttttttccatggtgctgatgcaatccggattacgtaatccggacagcaccagcatcaattctgaacatgtttgtaa 7971002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 46 - 217
Target Start/End: Original strand, 41530645 - 41530824
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaa-cttaaaaaatagagcgcgttacatga-tgttttcggattacacaatccgaaaatcgcctgaac 143  Q
    ||||||||||||||||||||||||||||||| |||| || ||||||||| ||||||||||||| | ||||| ||||||| |||| ||| | | ||| ||     
T  41530645 gagttacggatttttccgaattttgtaatccggaaatctcaaaaaatagggcgcgttacatgatttttttcagattacataatctgaacaccccctaaaa 41530744  T
Q  144 accattttttctatgg------tgcaatccggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgtaa 217  Q
    ||| ||||||  ||||      ||||||||||||||||||||||||||| ||||| |||||| | | |||||||||||||    
T  41530745 accctttttttcatggtgctgttgcaatccggattacgtaatccggacatcaccatcaccaattttgaacatgtttgtaa 41530824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 46 - 152
Target Start/End: Original strand, 3094657 - 3094764
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    ||||||||| |||||||| |||||||||||| ||||||| ||||||||| |||| ||||||||||||| ||||||||| |||||| ||| | ||| ||||    
T  3094657 gagttacgggtttttccggattttgtaatccggaaacttcaaaaaatagggcgcattacatgatgtttccggattacataatccggaaaccccctaaaca 3094756  T
Q  145 ccattttt 152  Q
    ||||||||    
T  3094757 ccattttt 3094764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 27928124 - 27928017
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    |||| ||||||||||||| |||||||||||| ||||||| ||||||||| |||||||||||||||||| ||||||||| |||| | ||| | ||| ||||    
T  27928124 gagtaacggatttttccggattttgtaatccggaaacttcaaaaaatagggcgcgttacatgatgtttccggattacataatcaggaaaccccctaaaca 27928025  T
Q  145 ccattttt 152  Q
    ||||||||    
T  27928024 ccattttt 27928017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 21004320 - 21004473
Alignment:
Q  1 ttcataatctgaaatgatgttttcctttgttatagagtnnnnnnng-agttacggatttttccgaattttgtaatccagaaac-ttaaaaaatagagcgc 98  Q
    ||||||||| | |||| |||||||||||||||||| ||       | ||||||||||||||||| |||||||||||| ||||| ||||||||||  ||||    
T  21004320 ttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttacggatttttccggattttgtaatccggaaactttaaaaaataaggcgc 21004419  T
Q  99 gttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccatttttt 153  Q
    ||||||| |||||| ||||||||| ||||||||||   ||| |||||||||||||    
T  21004420 gttacat-atgtttccggattacataatccgaaaactccctaaacaccatttttt 21004473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 46 - 152
Target Start/End: Original strand, 44106199 - 44106306
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    |||| ||||||||||||  |||||||||||| ||||||| ||||||||| |||||||||||||||||| ||||||||| |||||| ||| | ||| ||||    
T  44106199 gagtaacggatttttccagattttgtaatccggaaacttcaaaaaatagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaaca 44106298  T
Q  145 ccattttt 152  Q
    || |||||    
T  44106299 cccttttt 44106306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 46 - 146
Target Start/End: Complemental strand, 8885636 - 8885535
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    |||| |||| |||||||| |||||||||||| ||||||| ||||||||| |||||||||||||||||| ||||||||| |||||| ||| | ||| ||||    
T  8885636 gagtaacgggtttttccggattttgtaatccggaaacttcaaaaaatagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaaca 8885537  T
Q  145 cc 146  Q
    ||    
T  8885536 cc 8885535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 24627666 - 24627723
Alignment:
Q  160 tgcaatccggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgtaa 217  Q
    |||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||    
T  24627666 tgcaatccggattacgtaatccggacaacaccagcaccaattctgaatatgtttgtaa 24627723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 46 - 152
Target Start/End: Original strand, 37248534 - 37248641
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaacttaaaaaa-tagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    ||||||||| |||||| | ||||||||||||  |||||||||||| ||| |||||||| ||||||||| ||||||||| |||||  ||| | ||| ||||    
T  37248534 gagttacgggtttttctggattttgtaatccgaaaacttaaaaaaatagggcgcgttagatgatgtttccggattacataatccagaaaccccctaaaca 37248633  T
Q  145 ccattttt 152  Q
    ||||||||    
T  37248634 ccattttt 37248641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 122
Target Start/End: Original strand, 34853309 - 34853382
Alignment:
Q  50 tacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattaca 122  Q
    ||||| |||||||| ||||||||||||  |||||| ||||||||| |||||||||||||||||| |||||||||    
T  34853309 tacgggtttttccggattttgtaatccgaaaactttaaaaaatagggcgcgttacatgatgtttccggattaca 34853382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 128
Target Start/End: Original strand, 16310575 - 16310658
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatcc 128  Q
    ||||||| | |||||||| |||||||||||| ||||||| ||||||||| | |||||| ||||| ||| |||||||||||||||    
T  16310575 gagttacaggtttttccggattttgtaatccggaaacttcaaaaaatagggtgcgttagatgatttttccggattacacaatcc 16310658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 46 - 162
Target Start/End: Complemental strand, 36404337 - 36404222
Alignment:
Q  46 gagttacggatttttccgaattttgtaatcc-agaaacttaaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    |||||||||||| ||||| |||||||||||| | || || ||||||||| ||| |||||||||| ||||||||||| | |||||||||| | ||| ||||    
T  36404337 gagttacggattattccggattttgtaatccgaaaatctcaaaaaatagggcgtgttacatgat-ttttcggattatataatccgaaaa-ctcctaaaca 36404240  T
Q  145 ccattttttctatggtgc 162  Q
    || ||||||  |||||||    
T  36404239 ccctttttttcatggtgc 36404222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 122
Target Start/End: Original strand, 28916764 - 28916836
Alignment:
Q  51 acggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattaca 122  Q
    |||| |||||||| |||||||||||| ||||||| ||||||||| |||||||| |||||||||  ||||||||    
T  28916764 acgggtttttccggattttgtaatccggaaacttcaaaaaatagggcgcgttaaatgatgtttctggattaca 28916836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 217
Target Start/End: Complemental strand, 31234876 - 31234739
Alignment:
Q  85 aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccattttttc----ta-tggtgcaatccggattacgtaat 179  Q
    ||||||||| ||||| || || || ||||||||||| | |||||||| | | ||| ||||||||||||||    || || |||| | |||||||||||||    
T  31234876 aaaaaatagggcgcgctatataattttttcggattatagaatccgaacaacccctaaacaccattttttcatggtactgatgcagttcggattacgtaat 31234777  T
Q  180 ccggacaacaccagcaccaaatctaaacatgtttgtaa 217  Q
    ||||||| ||| |||||||| ||| |||||||| ||||    
T  31234776 ccggacagcactagcaccaattctgaacatgttcgtaa 31234739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 131
Target Start/End: Complemental strand, 35676715 - 35676635
Alignment:
Q  52 cggatttttccgaattttgtaatccagaaact-taaaaaatagagcgcgttacatgatgttttcggattacacaatccgaa 131  Q
    |||||||||||| |||||||||||| ||||||  ||||||||| ||||| || ||||| ||| ||||||||| ||||||||    
T  35676715 cggatttttccggattttgtaatccggaaactacaaaaaatagggcgcgctatatgatttttccggattacataatccgaa 35676635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 42281077 - 42280967
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgtta---catgatgttttcggattacacaatccgaaaatcgcctga 141  Q
    |||| ||||||||||||| |||| |||||||  |||||| ||||||||||||||||||   |||||||||| | ||||||| |||||| ||| | ||| |    
T  42281077 gagtaacggatttttccggatttcgtaatccgaaaacttcaaaaaatagagcgcgttacatcatgatgtttccagattacataatccggaaaccccctaa 42280978  T
Q  142 acaccattttt 152  Q
    ||||| |||||    
T  42280977 acacccttttt 42280967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 31234578 - 31234528
Alignment:
Q  167 cggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgtaa 217  Q
    |||||||||||||||| |||||||||||||||| ||| ||||| |||||||    
T  31234578 cggattacgtaatccgaacaacaccagcaccaattctgaacatatttgtaa 31234528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 40994808 - 40994869
Alignment:
Q  85 aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaacacc 146  Q
    ||||||||| |||||||||||||||||| ||||||||| |||| ||||| | ||| ||||||    
T  40994808 aaaaaatagggcgcgttacatgatgtttccggattacataatctgaaaaccccctaaacacc 40994869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 11698450 - 11698385
Alignment:
Q  65 attttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccg 129  Q
    |||||||||||| ||||||| ||||||||   || |||||||||||||| ||||||||| ||||||    
T  11698450 attttgtaatccggaaacttcaaaaaataagacgtgttacatgatgtttccggattacataatccg 11698385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 9680 - 9573
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    ||||||||| ||||||||||||||||||||| ||||||| |||||||||  ||||||||||||||||| ||||||||| |||||||||| | ||||||||    
T  9680 gagttacgggtttttccgaattttgtaatccggaaacttcaaaaaataggacgcgttacatgatgtttccggattacataatccgaaaaccccctgaaca 9581  T
Q  145 ccattttt 152  Q
    || |||||    
T  9580 cccttttt 9573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 8e-28; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 47 - 153
Target Start/End: Original strand, 8154876 - 8154983
Alignment:
Q  47 agttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaacac 145  Q
    ||||||||||||||||| |||||||||||| ||||||| ||||||||| |||||||||||||||||| ||||||||| |||||||||| | ||| |||||    
T  8154876 agttacggatttttccggattttgtaatccggaaacttcaaaaaatagggcgcgttacatgatgtttccggattacataatccgaaaaccccctaaacac 8154975  T
Q  146 catttttt 153  Q
    | ||||||    
T  8154976 cctttttt 8154983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 46 - 152
Target Start/End: Original strand, 43737100 - 43737207
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    |||| ||||||||||||| |||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||| |||||| ||| | ||| ||||    
T  43737100 gagtaacggatttttccggattttgtaatccggaaacttcaaaaaatagggcgcgttacatgatgttttcggattacataatccggaaaccccctaaaca 43737199  T
Q  145 ccattttt 152  Q
    || |||||    
T  43737200 cccttttt 43737207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 24042371 - 24042264
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    ||||||||| |||||||| |||||||||||| ||||||| ||||||||  |||||||||||||||||| ||||||||| |||||| ||| | ||| ||||    
T  24042371 gagttacgggtttttccggattttgtaatccggaaacttcaaaaaataaggcgcgttacatgatgtttccggattacataatccggaaaccccctaaaca 24042272  T
Q  145 ccattttt 152  Q
    ||||||||    
T  24042271 ccattttt 24042264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 56 - 152
Target Start/End: Complemental strand, 19225771 - 19225674
Alignment:
Q  56 tttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccattttt 152  Q
    |||||||| ||||||||||||| |||||| ||||||||| | |||||||||||||||| ||||||||| |||||| ||||| ||| ||||||||||||    
T  19225771 tttttccggattttgtaatccaaaaacttcaaaaaatagggtgcgttacatgatgtttccggattacataatccggaaatcccctaaacaccattttt 19225674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 42925870 - 42925717
Alignment:
Q  1 ttcataatctgaaatgatgttttcctttgttatagagtnnnnnnng-agttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgc 98  Q
    ||||||||| | |||| |||||||||||||||||| ||       | |||||||| |||||||  |||||||||||| ||||||| ||||||||| ||||    
T  42925870 ttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttacgggtttttcctgattttgtaatccggaaacttcaaaaaatagggcgc 42925771  T
Q  99 gttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccattttt 152  Q
     ||||||||||||||||||||||| |||||| ||| | ||| |||||| |||||    
T  42925770 attacatgatgttttcggattacataatccggaaaccccctaaacacctttttt 42925717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 46 - 153
Target Start/End: Original strand, 47202470 - 47202578
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    |||||||||||||||||  ||||||||||||  |||||| ||||||||| |||||||||||||||||| ||||||||| |||||| ||| | ||| ||||    
T  47202470 gagttacggatttttccagattttgtaatccgaaaacttcaaaaaatagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaaca 47202569  T
Q  145 ccatttttt 153  Q
    || ||||||    
T  47202570 ccctttttt 47202578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 46 - 152
Target Start/End: Original strand, 3936084 - 3936191
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    |||| |||| |||||||| |||||||||||| ||||||| ||||||||| |||||||||||||||||| ||||||||| ||||| |||| | ||| ||||    
T  3936084 gagtaacgggtttttccggattttgtaatccggaaacttcaaaaaatagggcgcgttacatgatgtttccggattacataatccaaaaaccccctaaaca 3936183  T
Q  145 ccattttt 152  Q
    || |||||    
T  3936184 cccttttt 3936191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 28230651 - 28230544
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    |||| ||||||||||||| |||||||||||| ||||||| ||||||||| ||||||||| |||||||| ||||||||| |||||| ||| | ||| ||||    
T  28230651 gagtaacggatttttccggattttgtaatccggaaacttcaaaaaatagggcgcgttacttgatgtttccggattacataatccggaaaccccctaaaca 28230552  T
Q  145 ccattttt 152  Q
    || |||||    
T  28230551 cccttttt 28230544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 51 - 152
Target Start/End: Complemental strand, 37518473 - 37518371
Alignment:
Q  51 acggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccatt 149  Q
    ||||||||||||| ||||| |||||||||||||| ||||||||| ||| ||||||||| |||| ||||||||| |||||| ||| | ||| |||||||||    
T  37518473 acggatttttccggattttataatccagaaacttcaaaaaatagggcgtgttacatgaagtttccggattacataatccggaaaccccctaaacaccatt 37518374  T
Q  150 ttt 152  Q
    |||    
T  37518373 ttt 37518371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 28346078 - 28346167
Alignment:
Q  1 ttcataatctgaaatgatgttttcctttgttatagagtnnnnnnngagttacggatttttccgaattttgtaatccagaaacttaaaaaa 90  Q
    ||||||||||| |||||||||||||||||||| ||||        ||||||||||| ||||||||||||||||||||||||||| |||||    
T  28346078 ttcataatctggaatgatgttttcctttgttaaagagaaaaaaatgagttacggatgtttccgaattttgtaatccagaaacttcaaaaa 28346167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 46 - 129
Target Start/End: Original strand, 36408347 - 36408431
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccg 129  Q
    |||| ||||||||||||| |||||||||||||||||||| ||||||||  ||||| |||||||||||| ||||||||| ||||||    
T  36408347 gagtaacggatttttccggattttgtaatccagaaacttcaaaaaataaggcgcgatacatgatgtttccggattacataatccg 36408431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 3304988 - 3304853
Alignment:
Q  1 ttcataatctgaaatgatgttttcctttgttatagagtnnnnnnng-agttacggatttttccgaattttgtaatccagaaactt--aaaaaatagagcg 97  Q
    |||||||| || |||| |||||||||||||||||| ||       | ||||||||||||||||| ||||||||||||||||||||  ||||||||| | |    
T  3304988 ttcataatttggaatggtgttttcctttgttatagggtgaaaaatggagttacggatttttccggattttgtaatccagaaacttcaaaaaaatagggtg 3304889  T
Q  98 cgttacatgatgttttcggattacacaatccgaaaa 133  Q
     |||||||||| ||| ||||||||| ||||| ||||    
T  3304888 tgttacatgatatttccggattacataatccaaaaa 3304853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 47 - 133
Target Start/End: Complemental strand, 33574216 - 33574129
Alignment:
Q  47 agttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaa 133  Q
    ||||| ||||||||  | |||||||||||| ||||||| ||||||||| | |||||||||||||||||||||||||| ||||||||||    
T  33574216 agttatggatttttttggattttgtaatccggaaactttaaaaaatagggtgcgttacatgatgttttcggattacataatccgaaaa 33574129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 153
Target Start/End: Original strand, 36629181 - 36629289
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaacttaaaaaa-tagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    |||| ||||||||||||| |||||||||||  | ||||||||||| ||| |||||||||||||||||| ||||||||| |||| | ||| |  || ||||    
T  36629181 gagtaacggatttttccggattttgtaatctggtaacttaaaaaaatagggcgcgttacatgatgtttccggattacataatctggaaaccctctaaaca 36629280  T
Q  145 ccatttttt 153  Q
    |||||||||    
T  36629281 ccatttttt 36629289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 46 - 152
Target Start/End: Original strand, 6467671 - 6467780
Alignment:
Q  46 gagttacggatttttccgaattttgt--aatccagaaa-cttaaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaa 142  Q
    |||||||||||||||||||||| |||  |||||||||| || ||||||||| | | |||||||||| | ||||||||||| |||||||| | | ||| ||    
T  6467671 gagttacggatttttccgaattatgtaaaatccagaaatctcaaaaaatagggtgtgttacatgatttgttcggattacataatccgaacaccccctaaa 6467770  T
Q  143 caccattttt 152  Q
    |||| |||||    
T  6467771 cacccttttt 6467780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 36468719 - 36468613
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    |||| ||||||||||||| ||||||||||   ||||||| ||||||||| ||| ||||||||||| |||| ||||||| |||||| ||| | ||| ||||    
T  36468719 gagtaacggatttttccggattttgtaatatggaaacttcaaaaaatagggcgtgttacatgatg-tttcagattacataatccggaaaccccctaaaca 36468621  T
Q  145 ccattttt 152  Q
    || |||||    
T  36468620 cccttttt 36468613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 5731036 - 5730987
Alignment:
Q  167 cggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgta 216  Q
    |||||||||||||| ||||| |||||||| ||| ||||||||||||||||    
T  5731036 cggattacgtaatcaggacaccaccagcaacaattctaaacatgtttgta 5730987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 31642971 - 31643101
Alignment:
Q  1 ttcataatctgaaatgatgttttcctttgttatagagtnnnnnnng-agttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgc 98  Q
    ||||||||||| |||| ||||||| |||||||||| ||       | ||||||||||||||| | || |||||||   ||||||| ||||||||| | |     
T  31642971 ttcataatctggaatggtgttttcgtttgttatagggtgaaaaatggagttacggatttttctggatcttgtaatttggaaacttcaaaaaatagggtgt 31643070  T
Q  99 gttacatgatgttttcggattacacaatccg 129  Q
    |||||||||||||| ||||||||| ||||||    
T  31643071 gttacatgatgtttccggattacataatccg 31643101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 153
Target Start/End: Original strand, 33151201 - 33151292
Alignment:
Q  65 attttgtaatccagaaacttaaaaaa--tagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaacac-catttttt 153  Q
    |||||||||| | |||||||||||||  ||| |||| ||| ||||||| ||||||||||| |||||| ||||| ||| ||||| ||||||||    
T  33151201 attttgtaattcggaaacttaaaaaaaatagggcgcattatatgatgtcttcggattacataatccggaaatcccctaaacactcatttttt 33151292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 152
Target Start/End: Complemental strand, 31985661 - 31985594
Alignment:
Q  85 aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccattttt 152  Q
    ||||||||| |||||||||||||| ||||||||||||| ||| |||| | | | | ||||||||||||    
T  31985661 aaaaaatagggcgcgttacatgattttttcggattacataattcgaacaccccttaaacaccattttt 31985594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 5731247 - 5731199
Alignment:
Q  165 tccggattacgtaatccggacaacaccagcaccaaatctaaacatgttt 213  Q
    |||||||||||||||| ||||| ||||| |||||| ||| |||||||||    
T  5731247 tccggattacgtaatcgggacagcaccaacaccaattctgaacatgttt 5731199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 8e-28; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 34821514 - 34821419
Alignment:
Q  58 tttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccattttt 152  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||| | ||| ||||||||||||    
T  34821514 tttccgaattttgtaatccggaaacttcaaaaaatagagcgcgttacatgatgttttcggattacataatccggaaaccccctaaacaccattttt 34821419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 46 - 199
Target Start/End: Original strand, 48303967 - 48304127
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaa-cttaaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    |||||||||||||||||| |||||||||||| |||| || ||||||||| | | |||||||||| ||||| ||||||| |||||||||| | ||| ||||    
T  48303967 gagttacggatttttccggattttgtaatccggaaatctcaaaaaatagggtgtgttacatgattttttcagattacataatccgaaaaccccctcaaca 48304066  T
Q  145 ccattttttctatgg------tgcaatccggattacgtaatccggacaacaccagcaccaa 199  Q
    |||||||||  ||||      |||||||||||||||||||||| |||| ||||| ||||||    
T  48304067 ccatttttttcatggtggtgatgcaatccggattacgtaatccagacagcaccatcaccaa 48304127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 51 - 152
Target Start/End: Original strand, 39149791 - 39149892
Alignment:
Q  51 acggatttttccgaattttgtaatccagaaacttaaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccattt 150  Q
    ||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||  ||||| ||||||||| |||||| ||| | ||| ||||||||||    
T  39149791 acggatttttccggattttgtaatccagaaactcaaaaaatagggcgcgttacatagtgtttccggattacataatccggaaaccccctaaacaccattt 39149890  T
Q  151 tt 152  Q
    ||    
T  39149891 tt 39149892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 46 - 153
Target Start/End: Original strand, 47301995 - 47302103
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaacttaaaaaa-tagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    |||||| ||||||||||| |||||||||||| ||||||||||||| ||  |||||||||||||||||| ||||||||| |||||||||| | ||| ||||    
T  47301995 gagttatggatttttccggattttgtaatccggaaacttaaaaaaataaggcgcgttacatgatgtttccggattacataatccgaaaacctcctaaaca 47302094  T
Q  145 ccatttttt 153  Q
    || ||||||    
T  47302095 ccctttttt 47302103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 46 - 152
Target Start/End: Original strand, 51258378 - 51258485
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    |||||||||||||||||| ||||||||||||| ||| || ||||||||| ||||||||||| || ||||||||||||| |||||||| | | ||| ||||    
T  51258378 gagttacggatttttccggattttgtaatccataaatttcaaaaaatagggcgcgttacataattttttcggattacataatccgaacaccccctaaaca 51258477  T
Q  145 ccattttt 152  Q
    ||||||||    
T  51258478 ccattttt 51258485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 3903035 - 3902882
Alignment:
Q  1 ttcataatctgaaatgatgttttcctttgttatagagtnnnnnnng-agttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgc 98  Q
    ||||||||| | |||| |||||||||||||||||| ||       | |||||| | |||||||| ||||||||||||  |||||| ||||||||||||||    
T  3903035 ttcataatccggaatggtgttttcctttgttatagggtgaaaagtggagttactggtttttccggattttgtaatccgaaaacttcaaaaaatagagcgc 3902936  T
Q  99 gttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccattttt 152  Q
    ||||||||||||||| |||||||| |||||| ||| | ||| |||||| |||||    
T  3902935 gttacatgatgtttttggattacataatccggaaaccccctaaacacccttttt 3902882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 51 - 153
Target Start/End: Original strand, 35142055 - 35142158
Alignment:
Q  51 acggatttttccgaattttgtaatccagaaacttaaaaaat-agagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccatt 149  Q
    |||||||||||||  ||||||||||| ||||||| |||||| || |||||||||||||||||| ||||||||| |||||| ||| | ||| |||||||||    
T  35142055 acggatttttccgggttttgtaatccggaaacttcaaaaattagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacaccatt 35142154  T
Q  150 tttt 153  Q
    ||||    
T  35142155 tttt 35142158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 46 - 217
Target Start/End: Original strand, 45244365 - 45244539
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaa-cttaaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    |||||| ||||||||||| |||||||||| |  ||| || ||||||||| |||||||||||||| ||||||||||||| |||| |||||    |  ||||    
T  45244365 gagttatggatttttccggattttgtaattcgaaaatctcaaaaaatagggcgcgttacatgattttttcggattacataatctgaaaa----ccaaaca 45244460  T
Q  145 ccattttttctatgg------tgcaatccggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgtaa 217  Q
    || ||||||  ||||      ||||||| ||||||||||||||||||| ||| |||||||| ||| |||||||||||||    
T  45244461 ccctttttttcatggtgctgatgcaatctggattacgtaatccggacagcacgagcaccaattctgaacatgtttgtaa 45244539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 46 - 133
Target Start/End: Original strand, 3937364 - 3937452
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaa 133  Q
    ||||||||  ||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||  |||||||| ||| ||||||    
T  3937364 gagttacgagtttttccgaattttgtaatccggaaacttcaaaaaatagggcgcgttacatgatgtttctggattacataattcgaaaa 3937452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 54 - 152
Target Start/End: Complemental strand, 47740107 - 47740008
Alignment:
Q  54 gatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccattttt 152  Q
    |||||||||  |||||||||||| ||||||| ||||||||| |||||||||||||||||| ||||||||| |||||| ||| | ||| |||||| |||||    
T  47740107 gatttttccagattttgtaatccggaaacttcaaaaaatagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacacccttttt 47740008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 51 - 152
Target Start/End: Complemental strand, 38977926 - 38977824
Alignment:
Q  51 acggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccatt 149  Q
    |||||||||||   |||||||||||| ||||||| ||||||||| |||||||||||| |||||| |||||||| |||||||||| | ||| |||||| ||    
T  38977926 acggatttttctagattttgtaatccggaaacttcaaaaaatagggcgcgttacatggtgttttgggattacataatccgaaaaccccctaaacaccttt 38977827  T
Q  150 ttt 152  Q
    |||    
T  38977826 ttt 38977824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 501314 - 501240
Alignment:
Q  56 tttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccg 129  Q
    |||||||| ||||||||||||| |||||| ||||||||| |||||||||||||||||| |||||| || ||||||    
T  501314 tttttccggattttgtaatccaaaaacttcaaaaaatagggcgcgttacatgatgtttccggattgcataatccg 501240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 85 - 219
Target Start/End: Original strand, 32024999 - 32025139
Alignment:
Q  85 aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccattttttctatggt------gcaatccggattacgtaa 178  Q
    ||||||||| ||||  || ||||| ||||||||||| | |||| ||| | | ||| |||||||||||||  |||||      ||| | ||||||||||||    
T  32024999 aaaaaatagggcgcactatatgattttttcggattatagaatctgaacaccccctaaacaccatttttttcatggtcctgatgcagttcggattacgtaa 32025098  T
Q  179 tccggacaacaccagcaccaaatctaaacatgtttgtaata 219  Q
    | ||||||||||||||||||| ||| |||||||||||||||    
T  32025099 ttcggacaacaccagcaccaattctgaacatgtttgtaata 32025139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 33438503 - 33438564
Alignment:
Q  51 acggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgtt 111  Q
    ||||||||||| ||||||||||||||| |||||| ||||||||| |||||||||||||||||    
T  33438503 acggatttttctgaattttgtaatccaaaaacttcaaaaaatagggcgcgttacatgatgtt 33438564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 46 - 129
Target Start/End: Complemental strand, 51540797 - 51540713
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccg 129  Q
    |||| ||||||||||| | |||||| ||||| ||||||| ||||||||| |||||||||||||||||| || |||||| ||||||    
T  51540797 gagtaacggatttttctggattttggaatccggaaacttcaaaaaatagggcgcgttacatgatgtttccgaattacataatccg 51540713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 2358852 - 2358721
Alignment:
Q  1 ttcataatctgaaatgatgttttcctttgttatagagtnnnnnnng-agttacggatttttccgaattttgtaatccagaaactt--aaaaaatagagcg 97  Q
    ||||||||| | |||| |||||||||||||||||| ||       | ||||||||||||| | | |||||||||||| |||||||  ||||||||| |||    
T  2358852 ttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttacggattttcctggattttgtaatccggaaacttcaaaaaaatagggcg 2358753  T
Q  98 cgttacatgatgttttcggattacacaatccg 129  Q
     |||||||||||||| ||| ||||| ||||||    
T  2358752 tgttacatgatgtttccggcttacataatccg 2358721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 152
Target Start/End: Original strand, 50716228 - 50716335
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    ||||||||| ||||| || ||||||||||||  |||||| ||||||||| ||| |||||||||||||| | ||||||| |||||| ||| | ||| ||||    
T  50716228 gagttacgggttttttcggattttgtaatccgaaaacttcaaaaaatagggcgtgttacatgatgtttccagattacataatccggaaaccccctaaaca 50716327  T
Q  145 ccattttt 152  Q
    || |||||    
T  50716328 cccttttt 50716335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 50796619 - 50796512
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    ||||||||| ||||| || ||||||||||||  |||||| ||||||||| ||| |||||||||||||| | ||||||| |||||| ||| | ||| ||||    
T  50796619 gagttacgggttttttcggattttgtaatccgaaaacttcaaaaaatagggcgtgttacatgatgtttccagattacataatccggaaaccccctaaaca 50796520  T
Q  145 ccattttt 152  Q
    || |||||    
T  50796519 cccttttt 50796512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 3352249 - 3352172
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaacttaaaaaa-tagagcgcgttacatgatgttttcggattaca 122  Q
    |||| ||| |||||||| ||||||||||||  ||||||||||||| ||| | |||||||||||||||| |||||||||    
T  3352249 gagtaacgaatttttccaaattttgtaatcaggaaacttaaaaaaatagggtgcgttacatgatgtttccggattaca 3352172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 45244691 - 45244744
Alignment:
Q  160 tgcaatccggattacgtaatccggacaacaccagcaccaaatctaaacatgttt 213  Q
    |||||||||||||||||||||||||||| |||| |||||| ||| |||||||||    
T  45244691 tgcaatccggattacgtaatccggacaataccatcaccaattctgaacatgttt 45244744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 122
Target Start/End: Original strand, 52777226 - 52777283
Alignment:
Q  65 attttgtaatccagaaacttaaaaaatagagcgcgttacatgatgttttcggattaca 122  Q
    |||||||||||| ||||||| ||||||||||| | ||||||||||||| |||||||||    
T  52777226 attttgtaatccggaaacttcaaaaatagagcactttacatgatgtttccggattaca 52777283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 34821579 - 34821512
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttt 112  Q
    |||| ||||| ||||||| |||||||||||| ||||||| ||||||||| ||||||||| ||||||||    
T  34821579 gagtaacggaattttccggattttgtaatccggaaacttcaaaaaatagggcgcgttacctgatgttt 34821512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 49096455 - 49096327
Alignment:
Q  1 ttcataatctgaaatgatgttttcctttgttatagagtnnnnnnngagttacggatttttccgaattttgtaatccagaaa-cttaaaaaatagagcgcg 99  Q
    ||||||||||| ||||||||||| |||| ||| || ||        ||||||||||||||||| |||||||||||| |||| || ||||||||  ||  |    
T  49096455 ttcataatctggaatgatgtttttctttattaaagggtgaaaaataagttacggatttttccggattttgtaatccggaaatctcaaaaaatatggcatg 49096356  T
Q  100 ttacatgatgttttcggattacacaatcc 128  Q
    ||||||||| |||||| |||||| |||||    
T  49096355 ttacatgattttttcgaattacataatcc 49096327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 209
Target Start/End: Complemental strand, 44085605 - 44085434
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt--aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaac 143  Q
    |||| ||||||||||||||||| ||||||| | |||  |  ||||||||| | | ||||||| || | ||| ||||||| |||||||| | | ||| |||    
T  44085605 gagtgacggatttttccgaattatgtaatctaaaaatctcaaaaaaatagggtgtgttacataatttcttcagattacataatccgaacagc-cctaaac 44085507  T
Q  144 accattttttct-atggtgc------aatccggattacgtaatccggacaacaccagcaccaaatctaaacat 209  Q
    |||||||||| | |||||||      ||||| ||||||||||||| |||||||| |||||||| |||||||||    
T  44085506 accattttttttcatggtgctgatgcaatccagattacgtaatccagacaacacaagcaccaattctaaacat 44085434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 46622968 - 46622860
Alignment:
Q  46 gagttacggatttttccgaattttgtaat-ccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaac 143  Q
    |||| ||||||||||||| ||||| |||  || ||||||| |||||||||  | ||||||||||||||| ||||||||| |||| | ||| | ||| |||    
T  46622968 gagtaacggatttttccggattttataaaaccggaaacttcaaaaaataggacacgttacatgatgtttccggattacataatctggaaaccccctaaac 46622869  T
Q  144 accattttt 152  Q
    |||||||||    
T  46622868 accattttt 46622860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 8735278 - 8735331
Alignment:
Q  160 tgcaatccggattacgtaatccggacaacaccagcaccaaatctaaacatgttt 213  Q
    |||||||| ||||||| ||| |||||| |||||||||||| ||| |||||||||    
T  8735278 tgcaatccagattacgaaattcggacagcaccagcaccaattctgaacatgttt 8735331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 8735493 - 8735542
Alignment:
Q  168 ggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgtaa 217  Q
    |||||||||||||||||||||| || |||||| | | |||||||||||||    
T  8735493 ggattacgtaatccggacaacatcaacaccaattatgaacatgtttgtaa 8735542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 9087519 - 9087572
Alignment:
Q  160 tgcaatccggattacgtaatccggacaacaccagcaccaaatctaaacatgttt 213  Q
    |||||||| ||||||| ||| |||||| |||||||||||| ||| |||||||||    
T  9087519 tgcaatccagattacgaaattcggacagcaccagcaccaattctgaacatgttt 9087572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 9087734 - 9087783
Alignment:
Q  168 ggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgtaa 217  Q
    |||||||||||||||||||||| || |||||| | | |||||||||||||    
T  9087734 ggattacgtaatccggacaacatcaacaccaattatgaacatgtttgtaa 9087783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 30722039 - 30722002
Alignment:
Q  1 ttcataatctgaaatgatgttttcctttgttatagagt 38  Q
    ||||||||||||| || |||||||||||||||||||||    
T  30722039 ttcataatctgaactggtgttttcctttgttatagagt 30722002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 43473097 - 43473044
Alignment:
Q  100 ttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccatttttt 153  Q
    ||||||||||||| ||||||||| |||||| ||| | ||| |||||||||||||    
T  43473097 ttacatgatgtttccggattacataatccggaaaccccctaaacaccatttttt 43473044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 47123082 - 47123135
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgc 98  Q
    |||| |||| ||||||||||||||||||||| ||||||| ||||||||| ||||    
T  47123082 gagtaacgggtttttccgaattttgtaatccggaaacttcaaaaaatagggcgc 47123135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 47130448 - 47130501
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgc 98  Q
    |||| |||| ||||||||||||||||||||| ||||||| ||||||||| ||||    
T  47130448 gagtaacgggtttttccgaattttgtaatccggaaacttcaaaaaatagggcgc 47130501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 32035043 - 32035197
Alignment:
Q  1 ttcataatctgaaatgatgttttcctttgttata-gagtnnnnnnngagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgc 98  Q
    ||||||||||| |||||||||||| ||||||||| ||         |||||||||||||||||| |||||||||||| ||||||| ||||||||| ||||    
T  32035043 ttcataatctggaatgatgttttcttttgttatatgatgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaaatagggcgc 32035142  T
Q  99 gttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccatttttt 153  Q
    |||||||||||||| ||||||||| |||||| ||| | ||| |||||| ||||||    
T  32035143 gttacatgatgtttccggattacataatccggaaaccccctaaacaccctttttt 32035197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 5699488 - 5699641
Alignment:
Q  1 ttcataatctgaaatgatgttttcctttgttatagagtnnnnnnng-agttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgc 98  Q
    ||||||||| | |||| |||||||||||||||||| ||       | |||||||| ||||| ||||||||||||||| ||||||| ||||||||| ||||    
T  5699488 ttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttacgggttttttcgaattttgtaatccggaaacttgaaaaaatagggcgc 5699587  T
Q  99 gttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccattttt 152  Q
    |||||||||||||| ||||||||| |||||| ||| | ||| |||||| |||||    
T  5699588 gttacatgatgtttccggattacataatccggaaaccccctaaacacccttttt 5699641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 46 - 152
Target Start/End: Original strand, 17264386 - 17264493
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    |||| ||||||||||||| |||||||||||  ||||||| ||||||||| |||||||||||||||||| ||||||||| |||||| ||| | ||| ||||    
T  17264386 gagtaacggatttttccggattttgtaatctggaaacttcaaaaaatagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaaca 17264485  T
Q  145 ccattttt 152  Q
    || |||||    
T  17264486 cccttttt 17264493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 33413575 - 33413448
Alignment:
Q  1 ttcataatctgaaatgatgttttcctttgttatagagtnnnnnnng-agttacggatttttccgaattttgtaatccagaaacttaaaaaatagagcgcg 99  Q
    ||||||||| | |||| |||||||||||||||||| ||       | ||||||| ||||||| |||||||||||||| ||||||| |||||||| |||||    
T  33413575 ttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttacgaatttttctgaattttgtaatccggaaacttcaaaaatagggcgcg 33413476  T
Q  100 ttacatgatgttttcggattacacaatc 127  Q
    ||||||||||||| | ||||||| ||||    
T  33413475 ttacatgatgtttccagattacataatc 33413448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 46 - 133
Target Start/End: Original strand, 7412804 - 7412892
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaa 133  Q
    |||| |||| |||||||| |||||||||||| ||||||| ||||||||| ||| |||||||||||||| ||||||||| ||||||||||    
T  7412804 gagtaacgggtttttccggattttgtaatccggaaacttcaaaaaatagggcgtgttacatgatgtttccggattacataatccgaaaa 7412892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 24604545 - 24604438
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    |||||| ||||||||||||||||||||||||| |||||| ||||||||| |||  ||||||||| | ||||||||||| |||||||| | | | | ||||    
T  24604545 gagttaaggatttttccgaattttgtaatccaaaaacttcaaaaaatagggcgtcttacatgatttcttcggattacataatccgaacaccccttaaaca 24604446  T
Q  145 ccattttt 152  Q
    ||||||||    
T  24604445 ccattttt 24604438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 14587736 - 14587636
Alignment:
Q  53 ggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccatttt 151  Q
    ||||||||||| ||||||||||||  |||||| ||||||||| |||||||||||||||||| | ||||||| |||||  ||| | ||| |||||||||||    
T  14587736 ggatttttccggattttgtaatccgaaaactttaaaaaatagggcgcgttacatgatgtttcctgattacataatccataaaccccctaaacaccatttt 14587637  T
Q  152 t 152  Q
    |    
T  14587636 t 14587636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 17500967 - 17501015
Alignment:
Q  169 gattacgtaatccggacaacaccagcaccaaatctaaacatgtttgtaa 217  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  17500967 gattacgtaatccggacaacaccagcaccaaatctgaacatgtttgtaa 17501015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 46 - 152
Target Start/End: Original strand, 23406772 - 23406879
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    ||||||||  ||||||||||||| ||||||| ||||||| ||||||||| ||||||||  ||||||||  |||||||| |||||| ||| | ||| ||||    
T  23406772 gagttacgagtttttccgaatttcgtaatccggaaacttcaaaaaatagggcgcgttagttgatgtttctggattacataatccggaaaccccctaaaca 23406871  T
Q  145 ccattttt 152  Q
    ||||||||    
T  23406872 ccattttt 23406879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 57 - 120
Target Start/End: Complemental strand, 3717455 - 3717391
Alignment:
Q  57 ttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggatta 120  Q
    |||||||||||||||||||| ||||||| ||||| ||| |||||||||||||||||| |||||||    
T  3717455 ttttccgaattttgtaatccggaaacttcaaaaattagggcgcgttacatgatgtttccggatta 3717391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 4508485 - 4508386
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    |||| ||||||||||||| ||||| ||||||||||| || ||||| ||| ||| |||||||||||||| ||||||| | |||||| ||||| ||| ||||    
T  4508485 gagtaacggatttttccggattttataatccagaaatttcaaaaattagggcgtgttacatgatgtttccggattatataatccggaaatcccctaaaca 4508386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 2813409 - 2813300
Alignment:
Q  46 gagttacggatttttccgaat--tttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaa 142  Q
    ||||||| |||||||||| ||  |||||||||| ||||||| ||||||||  | | |||||||||||||| ||||||||| |||||| ||| | ||| ||    
T  2813409 gagttacagatttttccggatattttgtaatccggaaacttcaaaaaataaggtgtgttacatgatgtttccggattacataatccggaaaccccctaaa 2813310  T
Q  143 caccattttt 152  Q
    |||| |||||    
T  2813309 cacccttttt 2813300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 131
Target Start/End: Original strand, 9905100 - 9905180
Alignment:
Q  52 cggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaa 131  Q
    |||||||||||| |||||||||| | |||| || ||||||||| ||||| ||| |||| ||| ||||||||| ||||||||    
T  9905100 cggatttttccggattttgtaattcggaaatttcaaaaaatagggcgcgctacgtgatttttccggattacataatccgaa 9905180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 17501175 - 17501225
Alignment:
Q  167 cggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgtaa 217  Q
    |||||||||||||||||||| || ||| ||||| ||| |||||||||||||    
T  17501175 cggattacgtaatccggacagcatcaggaccaattctgaacatgtttgtaa 17501225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 1945712 - 1945668
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaacttaaaaaa 90  Q
    |||||||||||||||||| ||||||||||||  |||||| |||||    
T  1945712 gagttacggatttttccggattttgtaatccgaaaacttcaaaaa 1945668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 5638879 - 5638915
Alignment:
Q  86 aaaaatagagcgcgttacatgatgttttcggattaca 122  Q
    |||||||| |||||||||||||||||| |||||||||    
T  5638879 aaaaatagggcgcgttacatgatgtttccggattaca 5638915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 46 - 129
Target Start/End: Original strand, 29822603 - 29822687
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccg 129  Q
    ||||||||| |||||||| |||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||| ||||||    
T  29822603 gagttacgggtttttccggattttgtaatccggaaacttcaaaaaatacagcgcgttacatgatgttttcggattacataatccg 29822687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 49396946 - 49397100
Alignment:
Q  1 ttcataatctgaaatgatgttttcctttgttatagagtnnnnnnng-agttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgc 98  Q
    ||||||||| | |||||||||||||||| |||||| ||       | ||||||||||||||||| |||||||||||| ||||||| |||||||||   ||    
T  49396946 ttcataatccggaatgatgttttcctttattatagggtgaaaaatggagttacggatttttccggattttgtaatccggaaacttcaaaaaataggatgc 49397045  T
Q  99 gttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccatttttt 153  Q
    |||||| |||||||| |||||||| |||||||||||| | | |||| ||||||||    
T  49397046 gttacaagatgtttttggattacataatccgaaaatcccttaaacatcatttttt 49397100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 51 - 127
Target Start/End: Complemental strand, 17933315 - 17933238
Alignment:
Q  51 acggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatc 127  Q
    ||||||||||||  |||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||| ||||    
T  17933315 acggatttttccagattttgtaatccagaaacttcaaaaaatagggcgcgttacatgatgtttccggattacataatc 17933238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 32441749 - 32441879
Alignment:
Q  1 ttcataatctgaaatgatgttttcctttgttatagagtnnnnnnng-agttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgc 98  Q
    ||||||||| | |||| |||||||||||||||||| ||       | ||||| ||||||||| | |||||||||||| ||||||| ||||||||| ||||    
T  32441749 ttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagttaaggatttttctggattttgtaatccggaaacttcaaaaaatagcgcgc 32441848  T
Q  99 gttacatgatgttttcggattacacaatccg 129  Q
    |||||||||||||| ||||||||| ||||||    
T  32441849 gttacatgatgtttccggattacataatccg 32441879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 153
Target Start/End: Original strand, 34972867 - 34972956
Alignment:
Q  65 attttgtaatccagaaacttaaaaaa-tagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccatttttt 153  Q
    |||||||||||  ||||||||||||| ||| ||||||||||||||||||||||| |||| |||||||||| | ||| |||||||||||||    
T  34972867 attttgtaatctggaaacttaaaaaaatagggcgcgttacatgatgttttcggactacataatccgaaaaccccctaaacaccatttttt 34972956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 46 - 154
Target Start/End: Complemental strand, 48319247 - 48319139
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    |||| ||||||||||||| |||| ||||||| ||||||| ||||||||| ||||||||||||||||||  |||||||| |||||||||| | ||| ||||    
T  48319247 gagtgacggatttttccggattt-gtaatccggaaacttcaaaaaatagggcgcgttacatgatgtttctggattacataatccgaaaaccccctaaaca 48319149  T
Q  145 ccattttttc 154  Q
    || |||||||    
T  48319148 cctttttttc 48319139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 46 - 153
Target Start/End: Original strand, 23523890 - 23523998
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    ||||||||||||||| || |||||||||||| ||||||| |||||||||  ||||||||||||||||| ||||||||| |||||  ||| | ||| ||||    
T  23523890 gagttacggattttttcggattttgtaatccggaaacttcaaaaaataggacgcgttacatgatgtttccggattacataatccagaaaccccctaaaca 23523989  T
Q  145 ccatttttt 153  Q
    || ||||||    
T  23523990 ccctttttt 23523998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 38536108 - 38536261
Alignment:
Q  1 ttcataatctgaaatgatgttttcctttgttatagagtnnnnnnnga-gttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgc 98  Q
    ||||||||| |||||| |||||||||||||||||| ||       || ||||||| |||||||| |||||||||| | ||||||| ||||||||| |||     
T  38536108 ttcataatccgaaatggtgttttcctttgttatagggtgaaaaatgaagttacgggtttttccggattttgtaattcggaaacttcaaaaaatagggcgt 38536207  T
Q  99 gttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccattttt 152  Q
    |||||||||||||| | ||||||| |||||| ||| | ||| |||||| |||||    
T  38536208 gttacatgatgtttccagattacataatccggaaaccccctaaacacctttttt 38536261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 46 - 151
Target Start/End: Complemental strand, 6003856 - 6003748
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaacttaaaaaa---tagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaa 142  Q
    ||||||||||||||| |||||||| |||||| |||||||||||||    |||| |||||||||||||||| ||||||||| |||||| ||| | ||| ||    
T  6003856 gagttacggattttttcgaattttataatccggaaacttaaaaaaaataagagtgcgttacatgatgtttccggattacataatccggaaaccccctaaa 6003757  T
Q  143 caccatttt 151  Q
    |||| ||||    
T  6003756 caccttttt 6003748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 51 - 152
Target Start/End: Complemental strand, 46440452 - 46440350
Alignment:
Q  51 acggatttttccgaattttgtaatccagaaacttaaaaaa-tagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccatt 149  Q
    |||| |||||||||||||| |||||| ||||||||||||| |||  ||||||||||||||||| ||||||||| |||||| ||| | ||| |||||| ||    
T  46440452 acgggtttttccgaattttataatccggaaacttaaaaaaataggacgcgttacatgatgtttccggattacataatccggaaaccccctaaacaccctt 46440353  T
Q  150 ttt 152  Q
    |||    
T  46440352 ttt 46440350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 6229040 - 6228919
Alignment:
Q  1 ttcataatctgaaatgatgttttcctttgttatagagtnnnnnnng-agttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgc 98  Q
    ||||||||| | |||| |||||||||||||||||| ||       | || |||||||||||||| ||||||||| || ||||||| ||||||||| ||||    
T  6229040 ttcataatccggaatggtgttttcctttgttatagggtgaaaaatggagctacggatttttccggattttgtaacccggaaacttcaaaaaatagggcgc 6228941  T
Q  99 gttacatgatgttttcggatta 120  Q
    |||||||||||||| |||||||    
T  6228940 gttacatgatgtttccggatta 6228919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 3703433 - 3703326
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    ||||||||||||||| || ||||||||||||  |||||| |||||||||  || |||||||||| ||||||||||||| ||| |||| | | ||| ||||    
T  3703433 gagttacggattttttcggattttgtaatccgaaaacttcaaaaaataggacgtgttacatgattttttcggattacataattcgaacaccccctaaaca 3703334  T
Q  145 ccattttt 152  Q
    ||||||||    
T  3703333 ccattttt 3703326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 46 - 152
Target Start/End: Original strand, 19835504 - 19835611
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactta-aaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    |||| |||| |||||||| |||||||||||| |||||||  |||||||| | |||||||||||||||| ||||||||| |||||| ||| | ||| ||||    
T  19835504 gagtaacgggtttttccggattttgtaatccggaaactttgaaaaatagggtgcgttacatgatgtttccggattacataatccggaaaccccctaaaca 19835603  T
Q  145 ccattttt 152  Q
    || |||||    
T  19835604 cccttttt 19835611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 25539131 - 25539024
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    ||||||||| |||||||| |||||||||||| ||||||| ||||||||| ||  ||||||||||||||  |||||||| |||||| ||| | ||| ||||    
T  25539131 gagttacgggtttttccggattttgtaatccggaaacttcaaaaaatagggcatgttacatgatgtttctggattacataatccggaaaccccctaaaca 25539032  T
Q  145 ccattttt 152  Q
    | ||||||    
T  25539031 ctattttt 25539024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 38416503 - 38416635
Alignment:
Q  1 ttcataatctgaaatgatgttttcctttgttatagagtnnnnnnn-gagttacggatttttccgaattttgtaatccagaaacttaaaaaa-tagagcgc 98  Q
    |||||||||||||  | |||||||||||||||||| ||        ||||| ||||||||| | ||||||||||||| ||||| ||||||| ||| || |    
T  38416503 ttcataatctgaataggtgttttcctttgttatagggtgaaaaaatgagttgcggattttttcaaattttgtaatccggaaacataaaaaaatagggcac 38416602  T
Q  99 gttacatgatgttttcggattacacaatccgaa 131  Q
    |||||||||| ||||||||||||| ||||||||    
T  38416603 gttacatgattttttcggattacataatccgaa 38416635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 46 - 146
Target Start/End: Original strand, 7931642 - 7931743
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    |||| |||| |||||||| |||||| ||||| ||||||| ||||||||| ||||||||||| |||||| ||||||||| |||||| ||| | ||| ||||    
T  7931642 gagtaacgggtttttccggattttgcaatccggaaacttcaaaaaatagggcgcgttacattatgtttccggattacataatccggaaaccccctaaaca 7931741  T
Q  145 cc 146  Q
    ||    
T  7931742 cc 7931743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 56 - 152
Target Start/End: Complemental strand, 25491568 - 25491471
Alignment:
Q  56 tttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccattttt 152  Q
    ||||| || |||||||||||| ||||||| |||||||||  ||||||||||||||||| ||||||||| |||||| ||| | ||| |||||| |||||    
T  25491568 ttttttcggattttgtaatccggaaacttcaaaaaataggacgcgttacatgatgtttccggattacataatccggaaaccccctaaacacctttttt 25491471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 133
Target Start/End: Complemental strand, 25752620 - 25752539
Alignment:
Q  53 ggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaa 133  Q
    ||||||||||| |||||||||||| |||| || ||||||||| |||| ||||||||||||| | ||||||| ||||||||||    
T  25752620 ggatttttccggattttgtaatccggaaatttcaaaaaatagggcgcattacatgatgtttccagattacataatccgaaaa 25752539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 46 - 154
Target Start/End: Complemental strand, 54631646 - 54631537
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaacttaaaaaa-tagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    |||| |||| |||||||| |||||||||||| ||||||| ||||| ||  |||||||||||||||||| ||||||||| |||||| ||| | ||| ||||    
T  54631646 gagtaacgggtttttccggattttgtaatccggaaacttcaaaaagtatggcgcgttacatgatgtttccggattacataatccggaaaccccctaaaca 54631547  T
Q  145 ccattttttc 154  Q
    |  |||||||    
T  54631546 catttttttc 54631537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 2506215 - 2506107
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaata-gagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaac 143  Q
    |||| |||||||||||| |||||||| || ||||||| | |||||||| | |||||||||||||||||| ||||||||| |||||| ||| | ||| |||    
T  2506215 gagtaacggatttttccaaattttgtgattcagaaacatcaaaaaataagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaac 2506116  T
Q  144 accattttt 152  Q
    ||| |||||    
T  2506115 acccttttt 2506107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 152
Target Start/End: Original strand, 40703648 - 40703755
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    |||| ||||||||||||| |||||||||||| |||| || ||||||||| | || ||||||||||||| ||||||||| || | ||||| | ||| ||||    
T  40703648 gagtaacggatttttccggattttgtaatccggaaatttcaaaaaatagggtgcattacatgatgtttccggattacataacctgaaaaccccctaaaca 40703747  T
Q  145 ccattttt 152  Q
    || |||||    
T  40703748 cccttttt 40703755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 152
Target Start/End: Original strand, 8106387 - 8106483
Alignment:
Q  57 ttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccattttt 152  Q
    ||||||| ||||||||||||  |||||| ||||||||| ||||| |||||||| ||| || |||||| |||||||| | | ||| ||||||||||||    
T  8106387 ttttccggattttgtaatccgaaaacttcaaaaaatagggcgcgctacatgatttttccgtattacataatccgaacaccccctaaacaccattttt 8106483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 50392592 - 50392529
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaa-cttaaaaaatagagcgcgttacatgat 108  Q
    |||||||||||||||||| |||||||||||| |||| || ||||||| | ||||||||||||||    
T  50392592 gagttacggatttttccggattttgtaatccggaaatctcaaaaaatggggcgcgttacatgat 50392529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 25140775 - 25140725
Alignment:
Q  167 cggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgtaa 217  Q
    |||||||||||||||| ||| || ||||||||| ||| |||||||||||||    
T  25140775 cggattacgtaatccgaacagcatcagcaccaattctgaacatgtttgtaa 25140725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 53894169 - 53894108
Alignment:
Q  51 acggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgtt 111  Q
    |||| |||||||| |||||| ||||  ||||||| ||||||||| |||||||||||||||||    
T  53894169 acgggtttttccggattttgcaatcaggaaacttcaaaaaatagggcgcgttacatgatgtt 53894108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 42660435 - 42660383
Alignment:
Q  167 cggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgtaata 219  Q
    ||||||| |||||||||| | |||||||||||| ||| | |||||||||||||    
T  42660435 cggattatgtaatccggatagcaccagcaccaattctgagcatgtttgtaata 42660383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 54 - 152
Target Start/End: Complemental strand, 142138 - 142039
Alignment:
Q  54 gatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaacaccattttt 152  Q
    |||||||||  |||||||||||| ||||||| ||||||||| |||||||||||||||||| ||||||||| |||||| ||| | ||| |||||| |||||    
T  142138 gatttttccagattttgtaatccggaaacttcaaaaaatagggcgcgttacatgatgtttccggattacataatccggaaaccccctaaacacccttttt 142039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 3568 - 3494
Alignment:
Q  56 tttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccg 129  Q
    ||||| |||||||||||||| |||||||| ||||||||| |||||||||||||||||| ||||||||| ||||||    
T  3568 ttttttcgaattttgtaatctagaaacttcaaaaaatagggcgcgttacatgatgtttccggattacataatccg 3494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 46 - 152
Target Start/End: Original strand, 23098 - 23205
Alignment:
Q  46 gagttacggatttttccgaattttgtaatccagaaactt-aaaaaatagagcgcgttacatgatgttttcggattacacaatccgaaaatcgcctgaaca 144  Q
    |||| ||||||||||||||||||| |||||| ||||||| ||||||||| | || ||||||||||||| ||||||| | |||||| ||| | ||| ||||    
T  23098 gagtaacggatttttccgaattttataatccggaaacttcaaaaaatagggtgcattacatgatgtttccggattatataatccggaaaccccctaaaca 23197  T
Q  145 ccattttt 152  Q
    || |||||    
T  23198 cctttttt 23205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 205873 - 205816
Alignment:
Q  160 tgcaatccggattacgtaatccggacaacaccagcaccaaatctaaacatgtttgtaa 217  Q
    |||||||||||||||||||||| |||| |||||||||||| ||| |||||||||||||    
T  205873 tgcaatccggattacgtaatccagacatcaccagcaccaattctgaacatgtttgtaa 205816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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