View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11163_low_4 (Length: 447)
Name: NF11163_low_4
Description: NF11163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11163_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 80 - 429
Target Start/End: Original strand, 31592083 - 31592436
Alignment:
| Q |
80 |
aaaaaagggagtagtagaaatgaagtttacgatggag---aaggaaatttgaggaaaaattcatggaataagctcaacagcaagtattgtggataagtga |
176 |
Q |
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| T |
31592083 |
aaaaaggggagtagtagaaatgaaattttcgatggatcataaggaaatttgaggaaaaattcatggaataagctcaagagaaagtattgtggacaagtga |
31592182 |
T |
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| Q |
177 |
ttttggtaaggaagcacatattcagttaaagaagcttatgcgtcaat--tggaggaaccggcgaatgaagaccttaggtaatttgcagatgtgtgaaaca |
274 |
Q |
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| T |
31592183 |
ttttggtaaggaagcacatgttcagttaaagaaacttatgcgtcaatattggaggaaccggcgaatgaagaccttgggaaatttgcagatgtgtgaaaca |
31592282 |
T |
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| Q |
275 |
gatgtgttctgttgaaggtgtgttttttcggtatgaaggttactaccaatcaaggttccaacgaaggataatttattaaagggaggtgttttgaactaat |
374 |
Q |
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| T |
31592283 |
gattagttctgttgaaggtgtctttt-tcggtatgaaggttactactaatcaaggttccaacgaaggataatttattaaaaagaggtgtttttaactaat |
31592381 |
T |
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| Q |
375 |
ctcaaatcggccaatggattttacatccattagaatgtatggattctgttgattg |
429 |
Q |
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| T |
31592382 |
ctcaaatcggccaatggattttacatccattagaatgtatggattctgttgattg |
31592436 |
T |
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