View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11163_low_6 (Length: 398)
Name: NF11163_low_6
Description: NF11163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11163_low_6 |
 | |
|
| [»] scaffold0024 (1 HSPs) |
| | |
|
| [»] scaffold0122 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 10 - 382
Target Start/End: Complemental strand, 3180842 - 3180450
Alignment:
| Q |
10 |
gacacgacactgacacgtctacaatgataaaactttaagaaaatgacataggttatgattccgggacacaccttcaatcagaagtgtcagtgcaatagag |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3180842 |
gacaggacactgacacgtctacaatgataaaattttaagaaaatgacataggttatgattccgggacacacgttcaatcagaagtgtcagtgcaatagag |
3180743 |
T |
|
| Q |
110 |
atcatgacaaatgatgctcacaattatacaggaaaacatacctctgaggag-----------------caagatatggcagatgaatgaaataactatca |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
3180742 |
atcatgacaaatgatgctcacaattatacaggaaaacatacctctgaggagacctatcccctgaggagcaagatatggcagatgaatgaaataactatca |
3180643 |
T |
|
| Q |
193 |
agtgaagttgtgatagagatttcaccttttatttctccaataggctaaaaaaggtcaaattgaatcacaagcataatagattgcagtaatccagtggaca |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3180642 |
agtgaagttgtgatagagatttcaccttttatttctccaataggctaaaaaaggtcaagttgaatcacaagcataatagattgcagtaacccagtggaca |
3180543 |
T |
|
| Q |
293 |
t---gtgattatatacaaactcattccaaaaagggtgttaataaagagaatgccatatgagttttgttcctgttctcagttttagcaagattg |
382 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3180542 |
tatagtgattatatacaaactcattccaaaaagggtgttaataaagagaatgccatatgagttttgttcctgttctcagttttagcaagattg |
3180450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 154 - 357
Target Start/End: Original strand, 20959650 - 20959862
Alignment:
| Q |
154 |
tgaggagcaagatatggcagatgaatgaaataactatcaagtga-------agttgt-gatagagatttcaccttttatttctccaataggctaaaaaag |
245 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||| ||||||| || || |||||||||||||||| |||| |||||||||||| | ||||| |
|
|
| T |
20959650 |
tgaggagcaagatatggcaaatgaaagaaataactaccaagtgagtgatagagaagttgatagagatttcacctcttatatctccaataggcaacaaaag |
20959749 |
T |
|
| Q |
246 |
gtcaaattgaatcacaagcataatagattgcagtaatccagtggacat-gtgat--tatatacaaactcattccaaaaagggtgttaataaagagaatgc |
342 |
Q |
| |
|
| ||||||||| || ||||||||||||||||||||||| ||||||||| ||||| ||||||||||||| || ||||| |||||||| ||||||||||| |
|
|
| T |
20959750 |
gacaaattgaaccaaaagcataatagattgcagtaatcaagtggacatagtgattatatatacaaactcgtttcaaaa--ggtgttaacaaagagaatgc |
20959847 |
T |
|
| Q |
343 |
catatgagttttgtt |
357 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
20959848 |
catatgagttttgtt |
20959862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 30 - 156
Target Start/End: Original strand, 20946556 - 20946682
Alignment:
| Q |
30 |
acaatgataaaactttaagaaaatgacataggttatgattccgggacacaccttcaatcagaagtgtcagtgcaatagagatcatgacaaatgatgctca |
129 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| ||||||||| |||||||||||| |||||||| ||| |||||||||| ||||| |||||||||||||| |
|
|
| T |
20946556 |
acaatgataaaattttgagaaaatgacataagttatgattttgggacacaccttagatcagaagcgtcggtgcaatagatatcataacaaatgatgctca |
20946655 |
T |
|
| Q |
130 |
caattatacaggaaaacatacctctga |
156 |
Q |
| |
|
|||||||| |||||||||||||||||| |
|
|
| T |
20946656 |
caattatagaggaaaacatacctctga |
20946682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 109
Target Start/End: Original strand, 25956525 - 25956563
Alignment:
| Q |
71 |
cgggacacaccttcaatcagaagtgtcagtgcaatagag |
109 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
25956525 |
cgggacacgccttcaatcagaagtgtccgtgcaatagag |
25956563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 26178564 - 26178610
Alignment:
| Q |
71 |
cgggacacaccttcaatcagaagtgtcagtgcaatagagatcatgac |
117 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
26178564 |
cgggacataccttcaatcagaagtgtccgtgcatcagagatcatgac |
26178610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 785420 - 785384
Alignment:
| Q |
73 |
ggacacaccttcaatcagaagtgtcagtgcaatagag |
109 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
785420 |
ggacacaccttcaatcagaagtgtccgtgcaacagag |
785384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 109
Target Start/End: Original strand, 34197199 - 34197235
Alignment:
| Q |
73 |
ggacacaccttcaatcagaagtgtcagtgcaatagag |
109 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34197199 |
ggacacaccttcaactagaagtgtcagtgcaatagag |
34197235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 104
Target Start/End: Complemental strand, 39619081 - 39619047
Alignment:
| Q |
70 |
ccgggacacaccttcaatcagaagtgtcagtgcaa |
104 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |
|
|
| T |
39619081 |
ccgggacacaccttcaatcagaagtgtccgtgcaa |
39619047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 18194 - 18137
Alignment:
| Q |
2 |
ggacatcagacacgacactgacacgtctacaatgataaaactttaagaaaatgacata |
59 |
Q |
| |
|
||||| ||||||||||||||||||||| ||| ||||||| ||| ||||||| ||||| |
|
|
| T |
18194 |
ggacaccagacacgacactgacacgtcgacaccgataaaattttgagaaaataacata |
18137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0122 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0122
Description:
Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 10283 - 10247
Alignment:
| Q |
73 |
ggacacaccttcaatcagaagtgtcagtgcaatagag |
109 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
10283 |
ggacacaccttcaatcagaagtgtctgtgcaagagag |
10247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University