View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11163_low_7 (Length: 361)
Name: NF11163_low_7
Description: NF11163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11163_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 9e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 16 - 319
Target Start/End: Original strand, 33346387 - 33346701
Alignment:
| Q |
16 |
gttgtgctaggggtaaaggtgaactatgaattgaattcataaaaattagcgtggtgcctgtctccc--gtgaagccatttggttgtagggtgacttttca |
113 |
Q |
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| T |
33346387 |
gttgtggtagaggtaaaggtgaactatgaattgaattcataaaaattagcgtggtgc-tgtctcccccgtgaggtcatttggttgtaggatgacttttca |
33346485 |
T |
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| Q |
114 |
gcctnnnnnnnctcgattcgtgacttggacatcgagataaaataaaaattgatgtgaatcaggcacggagaaaaatgcatgccaaatgttcaaaatcaaa |
213 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
33346486 |
gcctaaaaaaactcgattcgagacttggacatcgagataaaataaaaattgacgtgaatcagacacggacaaaaatgcatgccaaatgttcaaaatcaaa |
33346585 |
T |
|
| Q |
214 |
acttccacactgttaatgttttgcnnnnnnnatagacataagttcaaaataacagctattcagagtaaata----------ggttggtagcaaccgttac |
303 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33346586 |
acttccacactcttaatgttttgttttttttatagacataagttcaaaataacagctattcagagtaaatagcattagtagggttggtagcaaccgttac |
33346685 |
T |
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| Q |
304 |
atttatcatataagag |
319 |
Q |
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|||||||||||||||| |
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| T |
33346686 |
atttatcatataagag |
33346701 |
T |
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