View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11163_low_8 (Length: 296)
Name: NF11163_low_8
Description: NF11163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11163_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 288
Target Start/End: Complemental strand, 20602798 - 20602521
Alignment:
| Q |
12 |
atgaagagatgtcgaaccttagaaatcaataagggagagatggcagcgaggttgacggcagctgaaa-aaaggttgatagtgatgggaggttagggtggt |
110 |
Q |
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|||||||||||||||||| ||||| ||||||| |||||||||||||||||| ||||||||| ||||| |||||||||| |||| ||||||||||||||| |
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| T |
20602798 |
atgaagagatgtcgaaccctagaagtcaataaaggagagatggcagcgaggctgacggcag-tgaaagaaaggttgatggtgacgggaggttagggtggc |
20602700 |
T |
|
| Q |
111 |
ggatttgaaggtgaaa-ggaatagatgaacaattttgggaaaagagaaattgaaacatctcaagagttaaagagggagagaaacttagaatcaatgaaga |
209 |
Q |
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|||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
20602699 |
ggatctgaaggtgaaaaggaatatatgaacaattttgggaaaagagaaattgaaacatctcaagagttagagagggagagaaacttagaatcaatgaaga |
20602600 |
T |
|
| Q |
210 |
ataaatcgattccaaaagaagaagattgaattggtgaaaagggttgtagggtttaagagtgaaattgagaacaaactga |
288 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
20602599 |
ataaatcgattccaaaagaagaagattgaatcaatgaaaagggttgtagggtttaagaatgaaattgagaacaaactga |
20602521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 12 - 288
Target Start/End: Original strand, 8506717 - 8506990
Alignment:
| Q |
12 |
atgaagagatgtcgaaccttagaaatcaataagggagagatggcagcgaggttgacggcagctgaaaaaaggttgatagtgatgggaggttagggtggtg |
111 |
Q |
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|||||||||||||||||| ||||| |||||| |||||||||||||||||| |||||||||| ||| |||||||||| |||| ||||||||||||||| | |
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| T |
8506717 |
atgaagagatgtcgaaccctagaagtcaatataggagagatggcagcgaggctgacggcagcggaagaaaggttgatggtgacgggaggttagggtggcg |
8506816 |
T |
|
| Q |
112 |
gatttgaaggtgaaaggaatagatgaacaattttgggaaaagagaaattgaaacatctcaagagttaaagagggagagaaacttagaatcaatgaagaat |
211 |
Q |
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||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
8506817 |
gatctgaaggtgaaaggaatatatgaacaattttgggaaaagagaaattgaaacatctcaa---ttagagagggagagaaacttagaatcaatgaagaat |
8506913 |
T |
|
| Q |
212 |
aaatcgattccaaaagaagaagattgaattggtgaaaagggttgtagggtttaagagtgaaattgagaacaaactga |
288 |
Q |
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| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8506914 |
acatcgattccaaaagaagaagattgaatcaatgaaaagggttgtagggtttaagaatgaaattgagaacaaactga |
8506990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 115 - 288
Target Start/End: Complemental strand, 51647362 - 51647189
Alignment:
| Q |
115 |
ttgaaggtgaaaggaatagatgaacaattttgggaaaagagaaattgaaacatctcaagagttaaagagggagagaaacttagaatcaatgaagaataaa |
214 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
51647362 |
ttgatggtgaaaggaatatatgaacaattttgggaaaagagaaattgaaacatctcaagagttagagagggagagaaacttagaatcaatgaagaataaa |
51647263 |
T |
|
| Q |
215 |
tcgattccaaaagaagaagattgaattggtgaaaagggttgtagggtttaagagtgaaattgagaacaaactga |
288 |
Q |
| |
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| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
51647262 |
ttgattccaaaagaagaagattgaattaatgaaaagggttgtagggtttaagaatgaaattgagaagaaactga |
51647189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 12 - 281
Target Start/End: Original strand, 32015233 - 32015505
Alignment:
| Q |
12 |
atgaagagatgtcgaaccttagaaatcaataagggagagatggcagcgaggttgacggcagctgaaaaaaggttgatagtgatgggaggtt---agggtg |
108 |
Q |
| |
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|||||||||||||||||| || || ||||||||||||||| ||| |||||||||| || || ||| |||||||||||||| |||||||| | | | |
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| T |
32015233 |
atgaagagatgtcgaaccctaaaagtcaataagggagagacagcaacgaggttgacagcggcggaagaaaggttgatagtggcgggaggttgaaacgttt |
32015332 |
T |
|
| Q |
109 |
gtggatttgaaggtgaaaggaatagatgaacaattttgggaaaagagaaattgaaacatctcaagagttaaagagggagagaaacttagaatcaatgaag |
208 |
Q |
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||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
32015333 |
tgggagaagaaggtgaagggaatacgtgaacaattttgggaaaagagaaattgaaacatctcaagagttagagagggagagaaactgagaatcaatgaag |
32015432 |
T |
|
| Q |
209 |
aataaatcgattccaaaagaagaagattgaattggtgaaaagggttgtagggtttaagagtgaaattgagaac |
281 |
Q |
| |
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|||||||||||||||||||||||| |||||||| |||||||||||| ||| |||| ||||||||||||||||| |
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| T |
32015433 |
aataaatcgattccaaaagaagaatattgaattagtgaaaagggttatagagtttgagagtgaaattgagaac |
32015505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 51647434 - 51647353
Alignment:
| Q |
12 |
atgaagagatgtcgaaccttagaaatcaataagggagagatggcagcgaggttgacggcagctgaaaaaaggttgatagtga |
93 |
Q |
| |
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|||||||||||||||||| ||||| ||||||| |||||||||||||||||| ||||| |||| ||| |||||||||| |||| |
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| T |
51647434 |
atgaagagatgtcgaaccctagaagtcaataaaggagagatggcagcgaggctgacgacagcggaagaaaggttgatggtga |
51647353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 117 - 286
Target Start/End: Complemental strand, 23739157 - 23738985
Alignment:
| Q |
117 |
gaaggtgaaaggaatagatgaacaattttgggaaaag---agaaattgaaacatctcaagagttaaagagggagagaaacttagaatcaatgaagaataa |
213 |
Q |
| |
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|||| |||||||||||||||||| ||||| || |||| ||||||||||||||||||| ||| | |||| ||||| | |||||||||||||||||| |
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| T |
23739157 |
gaagatgaaaggaatagatgaaccatttttggtaaagagaagaaattgaaacatctcaaacgttggaatgggaaagaaattgagaatcaatgaagaataa |
23739058 |
T |
|
| Q |
214 |
atcgattccaaaagaagaagattgaattggtgaa-aagggttgtagggtttaagagtgaaattgagaacaaact |
286 |
Q |
| |
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|| |||||||||||||||||||| ||| ||||| ||||||| || ||||| ||||| |||||||||||||||| |
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| T |
23739057 |
at-gattccaaaagaagaagatttaatcagtgaagaagggttatatggtttgagagtaaaattgagaacaaact |
23738985 |
T |
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