View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11163_low_9 (Length: 293)
Name: NF11163_low_9
Description: NF11163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11163_low_9 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: scaffold0027 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 280
Target Start/End: Complemental strand, 63320 - 63059
Alignment:
| Q |
19 |
gatttttggggcatcatgctcttgaatcgtctcacgctacttttcagtgttttaaaatgtcagtgtggcagtttgttgaactgtataaaccatggtttag |
118 |
Q |
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| T |
63320 |
gatttttggggcatcatgctcttgaatcgtctcacgctacttttcagtgttttaaaatgtcagtgtggcagtttgttgaactgtataaaccatggtttag |
63221 |
T |
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| Q |
119 |
ttattttagtgctttgaactttgaagtagctgaaccatgataggagttttgtcgatttgatgtccggtttgattttcaaaatgctgatgtgaatattaaa |
218 |
Q |
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| T |
63220 |
ttattttagtgctttgaactttgaagtagctgaaccatgataggagttttgtcgatttgatgtccggtttgattttcaaaatgctgatgtgaatataaaa |
63121 |
T |
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| Q |
219 |
cgttttataatatttatgcacaactatgattttcaatgaaaattgtgtctatgtttggcttc |
280 |
Q |
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| T |
63120 |
cgttttataatatttatgcacaactttgattttcaatgaaaattgtgtctatgtttggcttc |
63059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 280
Target Start/End: Original strand, 21320479 - 21320740
Alignment:
| Q |
19 |
gatttttggggcatcatgctcttgaatcgtctcacgctacttttcagtgttttaaaatgtcagtgtggcagtttgttgaactgtataaaccatggtttag |
118 |
Q |
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| T |
21320479 |
gatttttggggcatcatgctcttgaatcgtctcacgctacttttcagtgttttaaaatgtcagtgtggcagtttgttgaactgtataaaccatggtttag |
21320578 |
T |
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| Q |
119 |
ttattttagtgctttgaactttgaagtagctgaaccatgataggagttttgtcgatttgatgtccggtttgattttcaaaatgctgatgtgaatattaaa |
218 |
Q |
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| T |
21320579 |
ttattttagtgctttgaactttgaagtagctgaaccatgataggagttttgtcgatttgatgtccggtttgattttcaaaatgctgatgtgaatataaaa |
21320678 |
T |
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| Q |
219 |
cgttttataatatttatgcacaactatgattttcaatgaaaattgtgtctatgtttggcttc |
280 |
Q |
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| T |
21320679 |
cgttttataatatttatgcacaactttgattttcaatgaaaattgtgtctatgtttggcttc |
21320740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 280
Target Start/End: Complemental strand, 44633767 - 44633722
Alignment:
| Q |
235 |
tgcacaactatgattttcaatgaaaattgtgtctatgtttggcttc |
280 |
Q |
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| T |
44633767 |
tgcataactttgatttgcaatgaaaattgtgtcgatgtttggcttc |
44633722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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