View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11164_high_3 (Length: 409)
Name: NF11164_high_3
Description: NF11164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11164_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 13 - 391
Target Start/End: Complemental strand, 44776811 - 44776433
Alignment:
| Q |
13 |
gagaccaacccacattgtgaatagaaataaagcaaagaattttgaacagaggggtcattttgaaatcctattttgataactctacagtgaatttcagttc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44776811 |
gagaccaacccacattgtgaatagaaataaagcaaagaattttgaacagaggggtcattttgaaatcctattttgataactctacagtgaatttcagttc |
44776712 |
T |
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| Q |
113 |
ctttattataaacaacaacaaggttatcatcatcatcatcacaaccaccgctttcctgtatcaacttataagctctggaacaagctttaagcacaaagtt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44776711 |
ctttattataaacaacaacaaggttatcatcatcatcatcacaactaccgctttcctgtatcaacttataagctctggaacaagctttaagcacaaagtt |
44776612 |
T |
|
| Q |
213 |
gcaagtgtaactatcagaaacaacgttgttgattagcatttggttataaataagcaaggcttgaagagggaaacaactatgagaaaaagcacgaatcatg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44776611 |
gcaagtgtaactatcagaaacaacgttgttgattagcatttggttataaataagcaaggcttgaagagggaaacaactatgagaaaaagcacgaatcatg |
44776512 |
T |
|
| Q |
313 |
gtgttggaaatgaaggggttgtggataagaatggaagaatgttgaaaaagagaataagcgtgtgagaggttaccgaatg |
391 |
Q |
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| T |
44776511 |
gtgttggaaatgaaggggttgtggataagaatggaagaatgttgaaaaagagaataagcgtgtgagaggttaccgaatg |
44776433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 13 - 391
Target Start/End: Original strand, 28369707 - 28370079
Alignment:
| Q |
13 |
gagaccaacccacattgtgaatagaaataaagcaaagaattttgaacagaggggtcattttgaaatcctattttgataactctacagtgaatttcagttc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28369707 |
gagaccaacccacattgtgaatagaaataaagcaaagaattttgaacagaggggtcattttgaaatcctattttgataactctacagtgaatttcagttc |
28369806 |
T |
|
| Q |
113 |
ctttattataaacaacaacaaggttatcatcatcatcatcacaaccaccgctttcctgtatcaacttataagctctggaacaagctttaagcacaaagtt |
212 |
Q |
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||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28369807 |
ctttattataaacaacaacaaggttatca------tcatcacaactaccgctttcctgtatcaacttataagctctggaacaagctttaagcacaaagtt |
28369900 |
T |
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| Q |
213 |
gcaagtgtaactatcagaaacaacgttgttgattagcatttggttataaataagcaaggcttgaagagggaaacaactatgagaaaaagcacgaatcatg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28369901 |
gcaagtgtaactatcagaaacaacgttgttgattagcatttggttataaataagcaaggcttgaagagggaaacaactatgagaaaaagcacgaatcatg |
28370000 |
T |
|
| Q |
313 |
gtgttggaaatgaaggggttgtggataagaatggaagaatgttgaaaaagagaataagcgtgtgagaggttaccgaatg |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28370001 |
gtgttggaaatgaaggggttgtggataagaatggaagaatgttgaaaaagagaataagcgtgtgagaggttaccgaatg |
28370079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 350
Target Start/End: Complemental strand, 2349398 - 2349315
Alignment:
| Q |
267 |
caaggcttgaagagggaaacaactatgagaaaaagcacgaatcatggtgttggaaatgaaggggttgtggataagaatggaaga |
350 |
Q |
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|||||||||| |||||||||||| | |||||||||| |||||| |||||| |||| ||||| ||||| ||||||||||||| |
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| T |
2349398 |
caaggcttgaggagggaaacaacctttagaaaaagcatcaatcatagtgttgaaaataaagggtttgtgcgtaagaatggaaga |
2349315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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