View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11164_high_5 (Length: 353)
Name: NF11164_high_5
Description: NF11164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11164_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 9e-95; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 9 - 243
Target Start/End: Original strand, 17184268 - 17184510
Alignment:
| Q |
9 |
agcagagaaagcaatagtacatttgaacagctataagttttgaaaccaaaatgtcttacagagacaaatcagattctgaatcaatgaggggtcagtacgc |
108 |
Q |
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| T |
17184268 |
agcagggaaagcaatagtacatttgaacagctataagttttgaaaccaaaatgtcttacagatacaaatcagattctgaatcaatgaggggtcagtacgc |
17184367 |
T |
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| Q |
109 |
aattttcttataatgattttaaaattttactggtcgaaat---------taagttccttgccattcaattattatattttaatgaaatgaatgatatgga |
199 |
Q |
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| T |
17184368 |
aattttcttataatgattttaaatttttactggtcgaaattcttatacataagttccttgccattcaattattatattttaatgagatgaatgatatgga |
17184467 |
T |
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| Q |
200 |
aagaacagtagaagtgaatgtaaaattgtgttgattgcaaattt |
243 |
Q |
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| T |
17184468 |
ca-aacagtggaagtgaatgtaaaattgtgttaattgcaaattt |
17184510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 9 - 243
Target Start/End: Complemental strand, 17196138 - 17195896
Alignment:
| Q |
9 |
agcagagaaagcaatagtacatttgaacagctataagttttgaaaccaaaatgtcttacagagacaaatcagattctgaatcaatgaggggtcagtacgc |
108 |
Q |
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| T |
17196138 |
agcagggaaagcaatagtacatttgaacagctataagtcttgaaaccaaaatgtcctacagtgacaaatcagattctgaatcaatgaggggtcagtacgc |
17196039 |
T |
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| Q |
109 |
aattttcttataatgattttaaaattttactggtcgaaat---------taagttccttgccattcaattattatattttaatgaaatgaatgatatgga |
199 |
Q |
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| T |
17196038 |
aattttcttataatgattttaaatttttactggtcgaaattcttatacataagttccttgccattcaattattatattttaatgagatgaatgatatgga |
17195939 |
T |
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| Q |
200 |
aagaacagtagaagtgaatgtaaaattgtgttgattgcaaattt |
243 |
Q |
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| T |
17195938 |
ca-aacagtggaagtgaatgtaaaattgtgttaattgcaaattt |
17195896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 271 - 335
Target Start/End: Original strand, 17184556 - 17184620
Alignment:
| Q |
271 |
caacccaaacaatatagctggcaacaaaaaaccttaaccaacgacacatcaacattaacagatat |
335 |
Q |
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| T |
17184556 |
caacccaaacaatctggctggcaacaaaaaaccttaaccaacgacacatcaacattaacagatat |
17184620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 17193267 - 17193229
Alignment:
| Q |
17 |
aagcaatagtacatttgaacagctataagttttgaaacc |
55 |
Q |
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| T |
17193267 |
aagcaatagtacatttggacagctataagttttgaaacc |
17193229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 335
Target Start/End: Complemental strand, 17195854 - 17195826
Alignment:
| Q |
307 |
accaacgacacatcaacattaacagatat |
335 |
Q |
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| T |
17195854 |
accaacgacacatcaacattaacagatat |
17195826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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