View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11164_low_1 (Length: 620)
Name: NF11164_low_1
Description: NF11164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11164_low_1 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 583; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 18 - 620
Target Start/End: Original strand, 46676854 - 46677456
Alignment:
| Q |
18 |
ggtattaggggaattattccggcaactattctcgagttccttgaatcacaacttcaagaattagacggtgaatctgctaggctcgcagattactttgatg |
117 |
Q |
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| T |
46676854 |
ggtattaggggaattattccggcaactattctcgagttccttgaatcacaacttcaagaattagacggtgaatctgctaggctcgcagattactttgatg |
46676953 |
T |
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| Q |
118 |
tgattacaggaactagcacaggtggtcttgtaactgccatgttaagtgctccaaatgataaacaacgtccactttttgctgccaaggatatcaagccctt |
217 |
Q |
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| T |
46676954 |
tgattacaggaactagcacaggtggtcttgtaactgccatgttaagtgctccaaatgataaacaacgtccactttttgctgccaaggatatcaagccctt |
46677053 |
T |
|
| Q |
218 |
ttacttggaacattgtccaaagattttcccacaacagaagtaagtatacatattcaaaccaattgcacttattctggtgcattaagttcattgaatagct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
46677054 |
ttacttggaacattgtccaaagattttcccacaacagaagtacgtatacatattcaaaccaattgcacttattctggtgcattaagttcattgaataact |
46677153 |
T |
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| Q |
318 |
tatgtatctgataaataaatataatttgtattaatggttgaacttatgcaggcacatgttgggatcggtggggaaattgttcaaatcattagcaggacca |
417 |
Q |
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| T |
46677154 |
tatgtatctgataaatatatataatttgtattaatggttgaacttatgcaggcacatgttgggatcggtggggaaattgttcaaatcattagcaggacca |
46677253 |
T |
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| Q |
418 |
aaatacgatgggaattacctacacagtgtggttagggagaagcttggggaaattcgtgtacatgaaacactcacaaatattgtgatccccacgtttgaca |
517 |
Q |
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| T |
46677254 |
aaatacgatgggaattacctacacagtgtggttagggagaagcttggggaaattcgtgtacatgaaacactcacaaatattgtgatccccacgtttgaca |
46677353 |
T |
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| Q |
518 |
taaaaacatcgcaaccaatcattttctcatcttataagatcaagaacgccccttgcatggatgctcgactctcggacatatgcatcagtacctatgcttc |
617 |
Q |
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| T |
46677354 |
taaaaacatcgcaaccaatcattttctcatcttataagatcaagaacgccccttgcatggatgctcgactctcggacatatgcatcagtacctctgctgc |
46677453 |
T |
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| Q |
618 |
tcc |
620 |
Q |
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| T |
46677454 |
tcc |
46677456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 21 - 259
Target Start/End: Original strand, 46680839 - 46681077
Alignment:
| Q |
21 |
attaggggaattattccggcaactattctcgagttccttgaatcacaacttcaagaattagacggtgaatctgctaggctcgcagattactttgatgtga |
120 |
Q |
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| T |
46680839 |
attaggggaattattcccgcaactatcctcgagttccttgaatcgcaacttcaagaattagacggtgaatctgctaggcttgcagattactttgatgtga |
46680938 |
T |
|
| Q |
121 |
ttacaggaactagcacaggtggtcttgtaactgccatgttaagtgctccaaatgataaacaacgtccactttttgctgccaaggatatcaagccctttta |
220 |
Q |
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| T |
46680939 |
ttacaggaacaagcacaggtggtcttgtaactgccatgttaagcgctccgaatgataaaaagcgcccactttttgctgccaaggatatcaagccctttta |
46681038 |
T |
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| Q |
221 |
cttggaacattgtccaaagattttcccacaacagaagta |
259 |
Q |
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| T |
46681039 |
cttggagcattctccaaagatcttcccacaacaaaagta |
46681077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 355 - 615
Target Start/End: Original strand, 46681168 - 46681428
Alignment:
| Q |
355 |
ttgaacttatgcaggcacatgttgggatcggtggggaaattgttcaaatcattagcaggaccaaaatacgatgggaattacctacacagtgtggttaggg |
454 |
Q |
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| T |
46681168 |
ttgaactcatgcagggacttgtttggatcatttggaaaattgttcagatcattggtaggaccaaaatatgatgggaaataccttcacgaagtggtgaggg |
46681267 |
T |
|
| Q |
455 |
agaagcttggggaaattcgtgtacatgaaacactcacaaatattgtgatccccacgtttgacataaaaacatcgcaaccaatcattttctcatcttataa |
554 |
Q |
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| T |
46681268 |
agaagttgggggaaattcgtgtgcacgagacgctgaccaatattgtgattcccacatttgacataaaaacaatgcaaccaattattttctcatcttataa |
46681367 |
T |
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| Q |
555 |
gatcaagaacgccccttgcatggatgctcgactctcggacatatgcatcagtacctatgct |
615 |
Q |
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| T |
46681368 |
gatcaagaaaactccatgcatggatgctcgactctcagacatatgtatcagcacctctgct |
46681428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 96 - 253
Target Start/End: Complemental strand, 6091148 - 6090991
Alignment:
| Q |
96 |
aggctcgcagattactttgatgtgattacaggaactagcacaggtggtcttgtaactgccatgttaagtgctccaaatgataaacaa-cgtccacttttt |
194 |
Q |
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||||| |||||||||||||||||||| ||||||| || ||||| |||||||| ||||||||| || |||||| || | |||||| |||||||||||| |
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| T |
6091148 |
aggcttgcagattactttgatgtgatctcaggaacaagtacaggaggtcttgtgactgccatgctagctgctcctgataa-aaacaatcgtccacttttt |
6091050 |
T |
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| Q |
195 |
gctgccaaggatatcaagcccttttacttggaacattgtccaaagattttcccacaaca |
253 |
Q |
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| T |
6091049 |
gctgccaaagatatcaagcccttttaccttgaacattgccctaaaattttcccacaaca |
6090991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 93 - 142
Target Start/End: Complemental strand, 2649574 - 2649525
Alignment:
| Q |
93 |
gctaggctcgcagattactttgatgtgattacaggaactagcacaggtgg |
142 |
Q |
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| T |
2649574 |
gctaggcttgcaaattactttgatgtgattacaggaacaagcacaggtgg |
2649525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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