View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11164_low_10 (Length: 304)

Name: NF11164_low_10
Description: NF11164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11164_low_10
NF11164_low_10
[»] chr3 (2 HSPs)
chr3 (18-294)||(13993187-13993463)
chr3 (196-250)||(55166085-55166139)
[»] scaffold0489 (2 HSPs)
scaffold0489 (209-282)||(10261-10334)
scaffold0489 (83-135)||(10132-10184)
[»] scaffold0140 (2 HSPs)
scaffold0140 (209-282)||(10694-10767)
scaffold0140 (83-135)||(10844-10896)
[»] chr6 (1 HSPs)
chr6 (197-282)||(3616956-3617041)
[»] chr7 (4 HSPs)
chr7 (207-282)||(2461511-2461586)
chr7 (197-282)||(33928478-33928563)
chr7 (83-133)||(2461678-2461728)
chr7 (202-250)||(28944878-28944926)
[»] chr4 (1 HSPs)
chr4 (218-250)||(53557731-53557763)
[»] chr5 (1 HSPs)
chr5 (217-249)||(2591599-2591631)


Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 13993187 - 13993463
Alignment:
Q  18 aaggggaagtttgattttcagctaaaataggtgttggcttgtcaagagaaagtgcctcacacaaagcttgttttgccatatgaatatctgtttgaagtct 117  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13993187 aaggggatgtttgattttcagctaaaataggtgttggcttgtcaagagaaagtgcctcacacaaagcttgttttgccatatggatatctgtttgaagtct 13993286  T
Q  118 tctctcccattgaccttttacttgaggaatagagttttcttctacttcattttcatcacctgtttgattaatcttcttaagctttttcctcaaatgtgta 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13993287 tctctcccattgaccttttacttgaggaatagagttttcttctacttcattttcatcacctgtttgattaatcttcttaagctttttcctcaaatgtgta 13993386  T
Q  218 ttccaatagttttttatgtcattgtctgttctttctggaagataggaagctatggcagcccatctacataaattcat 294  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13993387 ttccaatagtttttgatgtcattgtctgttctttctggaagataggaagctatggcagcccatctacataaattcat 13993463  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 55166085 - 55166139
Alignment:
Q  196 aagctttttcctcaaatgtgtattccaatagttttttatgtcattgtctgttctt 250  Q
    |||||| || || ||||||||||||||||| |||||||| ||||| |||||||||    
T  55166085 aagcttctttcttaaatgtgtattccaataattttttatctcattatctgttctt 55166139  T

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Target: scaffold0489 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: scaffold0489
Description:

Target: scaffold0489; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 209 - 282
Target Start/End: Original strand, 10261 - 10334
Alignment:
Q  209 aaatgtgtattccaatagttttttatgtcattgtctgttctttctggaagataggaagctatggcagcccatct 282  Q
    ||||||||||||||||| |||||||||||||||||||| |||| ||||||||| |||||||| |||||||||||    
T  10261 aaatgtgtattccaataattttttatgtcattgtctgtcctttgtggaagatatgaagctatagcagcccatct 10334  T

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Target: scaffold0489; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 10132 - 10184
Alignment:
Q  83 gcttgttttgccatatgaatatctgtttgaagtcttctctcccattgaccttt 135  Q
    |||||||| |||||||||||||||||||| || ||||| ||||||||||||||    
T  10132 gcttgtttggccatatgaatatctgtttgtagccttctttcccattgaccttt 10184  T

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Target: scaffold0140 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 209 - 282
Target Start/End: Complemental strand, 10767 - 10694
Alignment:
Q  209 aaatgtgtattccaatagttttttatgtcattgtctgttctttctggaagataggaagctatggcagcccatct 282  Q
    ||||||||||||||||| |||||||||||||||||||| |||| ||||||||| |||||||| |||||||||||    
T  10767 aaatgtgtattccaataattttttatgtcattgtctgtcctttgtggaagatatgaagctatagcagcccatct 10694  T

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Target: scaffold0140; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 83 - 135
Target Start/End: Complemental strand, 10896 - 10844
Alignment:
Q  83 gcttgttttgccatatgaatatctgtttgaagtcttctctcccattgaccttt 135  Q
    |||||||| |||||||||||||||||||| || ||||| ||||||||||||||    
T  10896 gcttgtttggccatatgaatatctgtttgtagccttctttcccattgaccttt 10844  T

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Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 197 - 282
Target Start/End: Complemental strand, 3617041 - 3616956
Alignment:
Q  197 agctttttcctcaaatgtgtattccaatagttttttatgtcattgtctgttctttctggaagataggaagctatggcagcccatct 282  Q
    ||||||||| ||||||  || |||||||||||||||||||||||||||||||||| |||||| || | ||||||||||||||||||    
T  3617041 agctttttcttcaaataagtgttccaatagttttttatgtcattgtctgttctttgtggaaggtatgcagctatggcagcccatct 3616956  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 207 - 282
Target Start/End: Complemental strand, 2461586 - 2461511
Alignment:
Q  207 tcaaatgtgtattccaatagttttttatgtcattgtctgttctttctggaagataggaagctatggcagcccatct 282  Q
    ||||||| |||||||||||||||||||||||||| |||||||||| |||||| || || ||||| |||||||||||    
T  2461586 tcaaatgagtattccaatagttttttatgtcattatctgttctttgtggaaggtatgatgctattgcagcccatct 2461511  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 282
Target Start/End: Original strand, 33928478 - 33928563
Alignment:
Q  197 agctttttcctcaaatgtgtattccaatagttttttatgtcattgtctgttctttctggaagataggaagctatggcagcccatct 282  Q
    ||||||||| | | |||||| |||||||| || ||||| ||||| |||||||||| |||||| || ||||||||||| ||||||||    
T  33928478 agctttttctttagatgtgtgttccaataattctttatatcattatctgttctttgtggaaggtatgaagctatggctgcccatct 33928563  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 133
Target Start/End: Complemental strand, 2461728 - 2461678
Alignment:
Q  83 gcttgttttgccatatgaatatctgtttgaagtcttctctcccattgacct 133  Q
    |||| ||| ||||| ||||||||||||||||||||||| ||||||||||||    
T  2461728 gcttttttggccatttgaatatctgtttgaagtcttctttcccattgacct 2461678  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 28944878 - 28944926
Alignment:
Q  202 tttcctcaaatgtgtattccaatagttttttatgtcattgtctgttctt 250  Q
    |||| |||||||||| |||||| |||| ||||| |||||||||||||||    
T  28944878 tttcttcaaatgtgtgttccaaaagttctttatctcattgtctgttctt 28944926  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 53557763 - 53557731
Alignment:
Q  218 ttccaatagttttttatgtcattgtctgttctt 250  Q
    |||||||||||||||||||||||||||||||||    
T  53557763 ttccaatagttttttatgtcattgtctgttctt 53557731  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 2591631 - 2591599
Alignment:
Q  217 attccaatagttttttatgtcattgtctgttct 249  Q
    |||||||||||||||||| ||||||||||||||    
T  2591631 attccaatagttttttatttcattgtctgttct 2591599  T

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