View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11164_low_12 (Length: 280)
Name: NF11164_low_12
Description: NF11164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11164_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 11 - 266
Target Start/End: Complemental strand, 5744960 - 5744705
Alignment:
| Q |
11 |
cacagaaattgttgagcttatctagtaattgatgattttcattccttagccaaacaacttgtgaccaaagctcatcaagctgtttttgtttcctcattcg |
110 |
Q |
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| T |
5744960 |
cacagaaattgttgagcttatctagtaattgatgattttcattccttagccaaacaacttgtgaccaaagctcatcaagctgtttttgtttcctcattcg |
5744861 |
T |
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| Q |
111 |
cgaccggcgtgctgactctcggttcgataccattcttcgatgttttctttcgttgattagacctaggttttgttcgtccgcttcgtcggaagttgagttg |
210 |
Q |
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| T |
5744860 |
cgaccggcgtgctgactctcggttcgataccattcttcgatgttttctttcgttgattagacctaggttttgttcgtccgcttcgtcggaagttgagttg |
5744761 |
T |
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| Q |
211 |
ctgcttatgcatgacgatggaggactgaagtcttggagaatttgaatagggttttg |
266 |
Q |
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| T |
5744760 |
ctgcttatgcatgaggatggaggactgaagtcttggagaatttgaatagggttttg |
5744705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 39 - 224
Target Start/End: Complemental strand, 6066938 - 6066753
Alignment:
| Q |
39 |
ttgatgattttcattccttagccaaacaacttgtgaccaaagctcatcaagctgtttttgtttcctcattcgcgaccggcgtgctgactctcggttcgat |
138 |
Q |
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| T |
6066938 |
ttgatgattttcattccttagccaaagaacttgtgaccaaagctcatcaaggtgtttctgcttcctcatgcgtgaacgacgcgctgattcgcggtttgat |
6066839 |
T |
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| Q |
139 |
accattcttcgatgttttctttcgttgattagacctaggttttgttcgtccgcttcgtcggaagttgagttgctgcttatgcatga |
224 |
Q |
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| T |
6066838 |
atcatccttctgtgtttcctctcattgatgagactaaggttttgttcatctgcttcatcagaagttgagttgctgcttatgcatga |
6066753 |
T |
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