View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11164_low_14 (Length: 250)
Name: NF11164_low_14
Description: NF11164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11164_low_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 39308045 - 39307804
Alignment:
| Q |
1 |
catcttcttgacaaatctcttttccatttataacaccagtaccaacagaaaccgaccgcatcaagttaagtgcttctaaatcgcttcttgaaggcttacg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39308045 |
catcttcttgacaaatctcttttccatttataacaccagtaccaacagaaaccgaccgcatcaagttaagtgcttctaaatcacttcttgaaggcttacg |
39307946 |
T |
|
| Q |
101 |
cttaaccgaatacccgactttcctcccattacagtacataatccatagaggagttgaaaacaagttactgttattgttacaagatcctgaggtagcactt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39307945 |
cttaaccgaatacccgactttcctcccattacagtacataatccaaagaggagttgaaaacaagttactgttattgttacaagatcctgaggtagcactt |
39307846 |
T |
|
| Q |
201 |
tctagcacaattctcaacgttcctcctctcatttcctttgct |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39307845 |
tctagcacaattctcaacgttcctcctctcatttcctttgct |
39307804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University