View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11164_low_15 (Length: 245)
Name: NF11164_low_15
Description: NF11164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11164_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 23346021 - 23345794
Alignment:
| Q |
1 |
acagaaacgattaattttaaaaagagtagactactttcacgagcgtgataaaataagaaataattagtacaattaaaccaactttttattatatatatnn |
100 |
Q |
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| T |
23346021 |
acagaaacgattaattttaaaaagagtagactactttcacgagcgtgataaaataagaaataattagtacaattaaaccaactttttattatatatataa |
23345922 |
T |
|
| Q |
101 |
nnnnntcttagatattgtgagtttgtgacaggacagaacccatataaatactgtccaagtgtctgcacactgcacaggtcccctcaagcatatctaacaa |
200 |
Q |
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| T |
23345921 |
aaaaatcttagatattgtgagtttgtgacagaacagaaaccatataaatactgtccaagtgtctgcacactgcacaggtcccctcaagcatatctaacaa |
23345822 |
T |
|
| Q |
201 |
caagaagtaaaaatcctctgatcaagat |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
23345821 |
caagaagtaaaaatcctctgatcaagat |
23345794 |
T |
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