View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11164_low_6 (Length: 352)
Name: NF11164_low_6
Description: NF11164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11164_low_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 15 - 352
Target Start/End: Complemental strand, 39308483 - 39308149
Alignment:
| Q |
15 |
aataacaatcataaagccatgtctgctaaagccatgattgaccacaatagcttggcatagctcaaaaagggacaattaa-ttaatcaagttgaatgattg |
113 |
Q |
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| T |
39308483 |
aataacaatcataaagccatgtctgctaaagccatgattgaccacaatagcttggcatagctcaaaaagggataattaaattaatcaagttgaatgattg |
39308384 |
T |
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| Q |
114 |
aaacgaaaccggtccggatcaacaaaaaatcagacatgacttgcaaatcaaggttaatagtagtttataaacatcccgtctccccaacctattcacacgc |
213 |
Q |
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| T |
39308383 |
aaac-----cggtccggatcaacaaaaaatcagacatgacttgcaaatcaaggttaatagtagtttataaacatcccgtctccccaacctattcacacgc |
39308289 |
T |
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| Q |
214 |
cttttaacgacaaagccac-gaggacacactcaagatccaaagcgaacaatacctcagnnnnnnnnntgcagcggacatgacttctaaacgaaaacatca |
312 |
Q |
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||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39308288 |
cttttaacgacaaagtcacagaggacacactcaagatccaaagcgaacaatacctcagaaaaaaaaatgcagcggacatgacttctaaacgaaaacatca |
39308189 |
T |
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| Q |
313 |
acaaggtcattttgattgaaaaaagaaaatactaagctct |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
39308188 |
acaaggtcattttgattgaaaaaagaaaatactaagctct |
39308149 |
T |
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