View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11164_low_7 (Length: 313)
Name: NF11164_low_7
Description: NF11164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11164_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 5 - 266
Target Start/End: Complemental strand, 7227484 - 7227223
Alignment:
| Q |
5 |
aattcagctcccttcttccatgaatgatgatatttacatgtttaatggaagggagattgcacgtgctcccacacaatttctgaagaggagcaccacaata |
104 |
Q |
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| T |
7227484 |
aattcagctcccttcttccatgaatgatgatatttacatgtttgatggaagggagattgcacgtgctcccacacaatttctgaagagaagcaccacaata |
7227385 |
T |
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| Q |
105 |
aacaacaaaattagaaagacttggagtggataattcaaatttgaaaccaacccaaagatttagtattgttaaataggtgagtgtggcacttgatatggaa |
204 |
Q |
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| T |
7227384 |
aacaacaaaattagaaagacttggagtggataattcaaatttgaaaccaacacaaagatttagtattgttaaataggtgagtgtggcacttgatatggaa |
7227285 |
T |
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| Q |
205 |
agtttttgttcatcacgaacaatacaactttcaaggaccaaactaattaatttgtttaatgc |
266 |
Q |
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| T |
7227284 |
agtttttgttcattactaacaatacaactttcaaggaccaaactaattaatttgtttaatgc |
7227223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 262 - 312
Target Start/End: Complemental strand, 7222578 - 7222528
Alignment:
| Q |
262 |
aatgccgaaaaggggttggcacaaccatcattgctaacacagaaggtaaac |
312 |
Q |
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| T |
7222578 |
aatgccgaaaaggggttggcacaaccatcgttgctaacacagaaggtaaac |
7222528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 292
Target Start/End: Original strand, 7058328 - 7058436
Alignment:
| Q |
184 |
agtgtggcacttgatatggaaagtttttgttcatcacgaacaatacaactttcaaggaccaaactaattaatttgtttaatgccgaaaaggggttggcac |
283 |
Q |
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| T |
7058328 |
agtgtggcactcgatatgtagaggttttgtttatcacgaactgcacatctgttaatgatcaaactattcaacttgtttaatgtcgaaaagggattggcac |
7058427 |
T |
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| Q |
284 |
aaccatcat |
292 |
Q |
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| T |
7058428 |
gaccatcat |
7058436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 7140236 - 7140282
Alignment:
| Q |
168 |
tattgttaaataggtgagtgtggcacttgatatggaaagtttttgtt |
214 |
Q |
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| T |
7140236 |
tattgttaaattggtgagcgtggcacttgatatgcaaaggttttgtt |
7140282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 8656151 - 8656197
Alignment:
| Q |
168 |
tattgttaaataggtgagtgtggcacttgatatggaaagtttttgtt |
214 |
Q |
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| T |
8656151 |
tattgttaaattggtgagtgtggcacttgatatgcagaggttttgtt |
8656197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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