View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11164_low_8 (Length: 312)
Name: NF11164_low_8
Description: NF11164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11164_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 15 - 294
Target Start/End: Original strand, 26838236 - 26838515
Alignment:
| Q |
15 |
atcattattgactttggttaaatctatcagtagacattgctacctcaagattcgcattcaaaattatggttatcagttataacttaattacaaaaaagtt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26838236 |
atcattattgactttggttaaatctatcggtagacattgctacctcaagattcgcattcaaaattatggttatcagttataacttaattacaaaaaagtt |
26838335 |
T |
|
| Q |
115 |
tatgtaaaactgttagatatagttttctggctcattcataggaagtttacattttcatagtactactataggtaaattcttcccnnnnnnnnnnnnggct |
214 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
26838336 |
tatgtaaaactgttagatatagttttttggctcattcataggaagtttacattttcatagtactactataggtagattcttcccttttttatttttggct |
26838435 |
T |
|
| Q |
215 |
ctaccgaaaaatcaatgtaatcattgaagaaggttaagaaaaatgatgtgtatcgagtattctgtcagatttacccatga |
294 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26838436 |
ctaccaaaaaatcactgtaatcattgaagaaggttgagaaaaataatgtgtatcgagtattctgtcagatttacccatga |
26838515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University