View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11164_low_9 (Length: 310)
Name: NF11164_low_9
Description: NF11164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11164_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 11 - 278
Target Start/End: Complemental strand, 9339049 - 9338782
Alignment:
| Q |
11 |
gttggacaaacacgcaagaaagtctctatcttcctcttagtatctcatggttctaaatgctttcttattggtaacaaaacttatttactcttttccttta |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9339049 |
gttggacaaacacgcaagaaagtctctatcttcctcttagtatctcatggttctaaatgctttcttattggtaacaaaacttatttactcttttccttta |
9338950 |
T |
|
| Q |
111 |
aatcaggttaatttacatgtgaagcacaacaatgtaagaagcctagcccattatagaagtagatttccttctcttttgtaaatacatcatgcttgcaaag |
210 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9338949 |
aatcaggttcgtttacatgtgaagcacaacaatgtaagaagcctagcccattatagaagtagatttccttctcttttgtaaatacatcatgcttgcaaag |
9338850 |
T |
|
| Q |
211 |
gggagataggagacatagtaataaacagataattgagttaccgaaatgagttgaggttttggagcata |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
9338849 |
gggagataggagacatagtaataaacagataattgtgttaccgaaatgagttgaggtttcggagcata |
9338782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 54083130 - 54083069
Alignment:
| Q |
101 |
ttttcctttaaatcaggttaatttacatgtgaagcacaacaatgtaagaagcctagcccatt |
162 |
Q |
| |
|
|||||||| | |||||||| ||||||||||||||||| | ||| ||||||||||||||||| |
|
|
| T |
54083130 |
ttttccttaatatcaggttggtttacatgtgaagcacagctatgcaagaagcctagcccatt |
54083069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University