View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11165_high_6 (Length: 239)
Name: NF11165_high_6
Description: NF11165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11165_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 32768080 - 32768303
Alignment:
| Q |
1 |
atctatttctcacctagaaaacacaaacacatacatgcaataaaaca---acaagagtagaattggataaacaacaacacatgcatgcaataaaacaaca |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32768080 |
atctatttctcacctagaaaacacaaacacatacatgcaataaaacaacaacaagagtagaattggataaacaacaacacatgcatgcaataaaacaaca |
32768179 |
T |
|
| Q |
98 |
ccaacaccagtagaattacattaaggaaaaaattgaatataccaccatcgtcttcgtccgtgtcgcggtaaggagccaaagtaggcgtgatttcattctt |
197 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32768180 |
ccaacaccagtagaattacactaaggaaaaaattgaatataccaccatcgtcttcgtccgtgtcgcggtaaggagccaaagtaggcgtgatttcattctc |
32768279 |
T |
|
| Q |
198 |
aacctgctgctgcacacgtgaagt |
221 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
32768280 |
aacctgctgctgcacacgtgaagt |
32768303 |
T |
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