View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11165_low_1 (Length: 590)
Name: NF11165_low_1
Description: NF11165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11165_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 1 - 589
Target Start/End: Original strand, 40556589 - 40557177
Alignment:
| Q |
1 |
agaatcatgaggacgttggttgtggatgcaatgtaggttttgacaaaataataaccaagnnnnnnngaaggaaccaatcagcgacaagagattttagcag |
100 |
Q |
| |
|
||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
40556589 |
agaatcatgaggatgttgtttgtggatgcaatgaaggttttgacaaaataataaccaagaaaaaaagaaggaaccaatcagcgacaagagattttagcat |
40556688 |
T |
|
| Q |
101 |
tcttaaatatggtatgcttgaatcaaagaatcgcggggttgctgattgtagacgcgatgagggtgttgggaaaaaacttatcaagacaagaagaagtgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40556689 |
tcttaaatatggtatgcttgaatcaaagaatcgcggggttactgattgtagacgcgatgagggtgttgggaaaaaacttatcaagacaagaagaagtgat |
40556788 |
T |
|
| Q |
201 |
ggaccacgggtgagaattgcttttggcaatcctgatacaaagaataatgagggagctcatgagggatcttcatccaatgaaggttccaaaaaggagatca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40556789 |
ggaccacgggtgagaattgcttttggcaatcctgatacaaagaataatgagggagctcatgagggatcttcatccaatgaaggttccaaaaaggagatca |
40556888 |
T |
|
| Q |
301 |
agaaaagaaaagacaagaatgaacgatcaagcaaaccgtcaaagaaacgcaagaaccaggtgcaagaagagaaaccggagcttccattggtgtttaaaga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
40556889 |
agaaaagaaaagacaagaatgaacgatcaagcaaaccgtcaaagaaacgcaagaaccaggtgcaagaagagaaaccggagcttccattggcgtttaaaga |
40556988 |
T |
|
| Q |
401 |
aaagatggaacaaatgggaggttgtgaggtgaagttggtgatccagaaggaactgacaatgagtgacgtggacaaagatcaaagccgcttgtccattcca |
500 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40556989 |
aaagattgaacaaatggaaggttgtgaggtgaagttggtgatccagaaggaactgacaatgagtgacgtggacaaagatcaaagccgcttgtccattcca |
40557088 |
T |
|
| Q |
501 |
ataggtaagattgaagagaactttctgacaccaacagaggaattgtctttggattatgtgcctcaaaaggaaaaaggcaggaagaagat |
589 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
40557089 |
ataggtaagattgaagagaactttctgacaccaacagaggaattgtctttggattatgtgcctcaaaataaaaaagggaggaagaagat |
40557177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University