View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11165_low_2 (Length: 357)
Name: NF11165_low_2
Description: NF11165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11165_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 344
Target Start/End: Original strand, 11526437 - 11526762
Alignment:
| Q |
18 |
gtttagtaataagttgatccattggaagtctgctatctcagatatcatctccaacacttccctcactggaaacttaacaaacaaggcttctaacaactca |
117 |
Q |
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| T |
11526437 |
gtttagtaataagttgatccattggaagtctgctatctcagatatcatctccaacacttccctcactggaaacttaacaaacaaggcttctaacaactca |
11526536 |
T |
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| Q |
118 |
atctgtgactttaccgtcctcaaattattcaatgttaacattcatcgccttaaagctcctactatcactgaagtcatctggaggtctcctttgtatcatt |
217 |
Q |
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| T |
11526537 |
atccgtgactttaccatcctcaaattattcaatgttaacattcatcgccctaaagctcctactatcactg-agtcatctggaggtctcctttgtatcatt |
11526635 |
T |
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| Q |
218 |
ggataaaatgcaattcagatggtgcatctttaggaaatccaggagtctcttcctgcggtggaatttttagagactttgaaggtacatgcgttggatgatt |
317 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
11526636 |
ggataaaatgcaattcagatggtgcatctttgggaaatccaggagtttcttcctgcggtggaatttttagagactttgaaggtacatgccttggatgctt |
11526735 |
T |
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| Q |
318 |
tgttgaacctttgggaactctcacttc |
344 |
Q |
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| T |
11526736 |
tgttgaacctttgggaactctcacttc |
11526762 |
T |
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