View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11165_low_3 (Length: 352)
Name: NF11165_low_3
Description: NF11165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11165_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 40557137 - 40557470
Alignment:
| Q |
1 |
ttggattatgtgcctcaaaagaaaaaagggaggaagaagatcgtcggtatgcacgtgtccgtgttggatcccaatcttatactctacaaagacatgtgct |
100 |
Q |
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| T |
40557137 |
ttggattatgtgcctcaaaataaaaaagggaggaagaagattgttggtatgcccgtgttcgtgttggatcccaatcttatactctacaaagacatgtgct |
40557236 |
T |
|
| Q |
101 |
tcaagaagtggaaaatggtgactggagaggtctacattatcacaaacaaatggaacgaacttgtagcagaaaaccgtttcaaagccaagaaaaaggtgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40557237 |
tcaagaagtggaaaatggtgactggagaggtctacattatcacaaacaaatggaacgaacttgtagcagaaaaccgtttcaaagccaagaaaaaggtgca |
40557336 |
T |
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| Q |
201 |
actctggtcttttagatgccgtggtgaactctacttcgcactcgtcaagctctagccaagttctattagtcaatgatgcacatactttcatataaaatct |
300 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40557337 |
actttggtcttttagatgccgtggtgaactctacttcgcactcgtcaagctctagccaagttctatcagtcaatgatgcacatactttcatataaaatct |
40557436 |
T |
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| Q |
301 |
ttaattttaagtatttagactttagacttcgttt |
334 |
Q |
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||||||||||||||||||||||| |||||||||| |
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| T |
40557437 |
ttaattttaagtatttagacttttgacttcgttt |
40557470 |
T |
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