View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11165_low_7 (Length: 229)
Name: NF11165_low_7
Description: NF11165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11165_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 7 - 217
Target Start/End: Complemental strand, 4846510 - 4846300
Alignment:
| Q |
7 |
cttcttctccttcttgcataagctatgattcttacgaccaataggaatgccagcaagagacatgaaactccaaccacagcaaccatgagcgtggttgact |
106 |
Q |
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| T |
4846510 |
cttcttctccttcttgcataagctatgattcttacgaccaataggaatgccagcaagagacatgaaactccaaccacagcaaccatgaacgtggttgact |
4846411 |
T |
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| Q |
107 |
tctttgactttgatcggtgttttggagatgttggtataatcatgggtttgttgggattcataccagccagattattttcatcacttattttgaaaatctc |
206 |
Q |
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| T |
4846410 |
tctttgactttgatcggtgttttggagatgttggtataatcatgggtttgttgggattcataccagccagattgtttttatcacttactttgaaaatctc |
4846311 |
T |
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| Q |
207 |
gactccattca |
217 |
Q |
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| T |
4846310 |
gattccattca |
4846300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 52 - 227
Target Start/End: Complemental strand, 4712525 - 4712353
Alignment:
| Q |
52 |
aatgccagcaagagacatgaaactccaaccacagcaaccatgagcgtggttgacttctttgactttgatcggtgttttggagatgttggtataatcatgg |
151 |
Q |
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| T |
4712525 |
aatgctagcaagagacatgataatccaaccaaagcaaacatgactatgggtgatttcttcgacttcgatcgtcgatttggagatgatggtataat---gt |
4712429 |
T |
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| Q |
152 |
gtttgttgggattcataccagccagattattttcatcacttattttgaaaatctcgactccattcagtaagacatc |
227 |
Q |
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| T |
4712428 |
gtttgatgggattcaaaccagcgagattatttttatcacttattttgaaaatctcaattccattcattatgacatc |
4712353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 4630692 - 4630744
Alignment:
| Q |
175 |
agattattttcatcacttattttgaaaatctcgactccattcagtaagacatc |
227 |
Q |
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| T |
4630692 |
agattagttttatcacttattttgaaaatctcaattccattcagcaggacatc |
4630744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 4636602 - 4636668
Alignment:
| Q |
152 |
gtttgttgggattcataccagccagattatt---ttcatcacttattttgaaaatctcgactccatt |
215 |
Q |
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| T |
4636602 |
gtttgttgggattcaaaccagcgagattgttatatttatcactaattttgaaaatctcgattccatt |
4636668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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