View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11166_high_11 (Length: 352)

Name: NF11166_high_11
Description: NF11166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11166_high_11
NF11166_high_11
[»] chr4 (32 HSPs)
chr4 (1-345)||(26009576-26009933)
chr4 (96-219)||(8753002-8753126)
chr4 (96-208)||(21240132-21240244)
chr4 (99-219)||(27915214-27915334)
chr4 (113-219)||(37626936-37627042)
chr4 (91-208)||(50890683-50890801)
chr4 (95-166)||(53234267-53234338)
chr4 (92-218)||(4068300-4068426)
chr4 (113-219)||(23568002-23568108)
chr4 (89-219)||(39292301-39292431)
chr4 (94-220)||(54639673-54639799)
chr4 (112-211)||(4728107-4728206)
chr4 (93-211)||(38547454-38547572)
chr4 (97-171)||(48051717-48051791)
chr4 (96-248)||(37175727-37175882)
chr4 (131-219)||(35911775-35911863)
chr4 (113-211)||(51834764-51834862)
chr4 (91-184)||(22478036-22478128)
chr4 (91-242)||(34701196-34701344)
chr4 (101-219)||(5497741-5497860)
chr4 (92-219)||(50620606-50620732)
chr4 (113-187)||(20032566-20032639)
chr4 (96-206)||(24157757-24157866)
chr4 (101-211)||(36363575-36363684)
chr4 (100-218)||(43921089-43921207)
chr4 (93-193)||(4197190-4197290)
chr4 (94-186)||(6336283-6336374)
chr4 (91-218)||(24858624-24858752)
chr4 (96-218)||(25098886-25099008)
chr4 (147-208)||(33881906-33881967)
chr4 (85-197)||(31917626-31917738)
chr4 (138-218)||(37177140-37177220)
[»] chr1 (30 HSPs)
chr1 (92-219)||(7444910-7445037)
chr1 (93-219)||(52698428-52698554)
chr1 (96-219)||(27262735-27262859)
chr1 (96-187)||(47235505-47235596)
chr1 (94-204)||(3550349-3550457)
chr1 (92-178)||(34620608-34620694)
chr1 (83-211)||(49805947-49806076)
chr1 (91-198)||(39527013-39527120)
chr1 (97-201)||(50015549-50015654)
chr1 (98-197)||(24980816-24980915)
chr1 (98-197)||(24989574-24989673)
chr1 (113-219)||(42592692-42592798)
chr1 (96-196)||(32003031-32003131)
chr1 (124-211)||(44698034-44698121)
chr1 (144-219)||(47019008-47019083)
chr1 (153-219)||(31963041-31963107)
chr1 (97-151)||(32161583-32161637)
chr1 (91-209)||(49899020-49899138)
chr1 (92-208)||(36995221-36995338)
chr1 (99-219)||(44529252-44529372)
chr1 (99-152)||(46369635-46369688)
chr1 (113-168)||(2507037-2507092)
chr1 (144-211)||(11451866-11451933)
chr1 (99-210)||(32745617-32745727)
chr1 (92-151)||(51972064-51972123)
chr1 (130-219)||(12806993-12807081)
chr1 (221-250)||(25129977-25130006)
chr1 (92-208)||(42724380-42724494)
chr1 (146-218)||(1862121-1862193)
chr1 (99-218)||(45584320-45584437)
[»] chr8 (26 HSPs)
chr8 (113-218)||(14548170-14548278)
chr8 (92-219)||(32615831-32615958)
chr8 (92-219)||(41570037-41570160)
chr8 (96-219)||(13521699-13521822)
chr8 (96-219)||(13611234-13611357)
chr8 (97-219)||(13244666-13244788)
chr8 (113-219)||(29912134-29912240)
chr8 (99-219)||(28626634-28626754)
chr8 (103-219)||(42964781-42964896)
chr8 (82-218)||(14955199-14955335)
chr8 (96-213)||(34085321-34085437)
chr8 (144-218)||(26738514-26738588)
chr8 (92-216)||(11766473-11766598)
chr8 (124-211)||(15808689-15808776)
chr8 (130-237)||(17922038-17922148)
chr8 (96-178)||(37953243-37953325)
chr8 (96-207)||(43799134-43799247)
chr8 (99-193)||(39900259-39900352)
chr8 (95-218)||(471993-472115)
chr8 (119-202)||(6939000-6939083)
chr8 (144-211)||(10409680-10409747)
chr8 (103-211)||(41235827-41235930)
chr8 (154-217)||(41909445-41909508)
chr8 (95-169)||(45312730-45312803)
chr8 (134-211)||(3036505-3036582)
chr8 (134-211)||(7859151-7859228)
[»] chr3 (29 HSPs)
chr3 (99-219)||(15496132-15496252)
chr3 (95-216)||(23512730-23512851)
chr3 (94-197)||(31732064-31732168)
chr3 (99-188)||(25985397-25985486)
chr3 (119-219)||(31752704-31752804)
chr3 (113-237)||(53248585-53248708)
chr3 (96-215)||(36924530-36924647)
chr3 (92-218)||(29577260-29577386)
chr3 (96-218)||(50173355-50173477)
chr3 (94-187)||(19791010-19791103)
chr3 (83-218)||(52685071-52685206)
chr3 (91-219)||(15985238-15985366)
chr3 (91-203)||(31375512-31375624)
chr3 (92-178)||(36473107-36473193)
chr3 (101-218)||(14030273-14030390)
chr3 (130-219)||(54457470-54457559)
chr3 (92-151)||(24487798-24487858)
chr3 (138-190)||(26554236-26554288)
chr3 (96-187)||(44765131-44765223)
chr3 (92-179)||(31830178-31830265)
chr3 (86-148)||(3169155-3169217)
chr3 (97-179)||(16041411-16041492)
chr3 (88-202)||(31844946-31845060)
chr3 (98-148)||(49068720-49068770)
chr3 (141-218)||(23070830-23070907)
chr3 (91-148)||(33840152-33840209)
chr3 (92-148)||(3074064-3074120)
chr3 (124-219)||(34600797-34600893)
chr3 (119-211)||(42461317-42461409)
[»] chr2 (24 HSPs)
chr2 (92-219)||(11074491-11074618)
chr2 (98-219)||(3954426-3954547)
chr2 (98-197)||(12880102-12880201)
chr2 (92-219)||(37426510-37426637)
chr2 (102-211)||(16011796-16011905)
chr2 (92-203)||(39575463-39575574)
chr2 (92-218)||(752140-752266)
chr2 (134-219)||(42088465-42088550)
chr2 (99-218)||(1852830-1852949)
chr2 (92-219)||(40141937-40142064)
chr2 (113-202)||(1944752-1944841)
chr2 (98-211)||(35316150-35316263)
chr2 (94-211)||(4825938-4826055)
chr2 (167-220)||(8741040-8741093)
chr2 (96-216)||(40083458-40083579)
chr2 (92-148)||(34847336-34847392)
chr2 (99-187)||(36626166-36626253)
chr2 (91-158)||(38788779-38788847)
chr2 (179-218)||(2060073-2060112)
chr2 (124-187)||(13505914-13505977)
chr2 (99-177)||(3272361-3272439)
chr2 (96-160)||(28022208-28022272)
chr2 (120-184)||(43651473-43651537)
chr2 (97-197)||(44949238-44949338)
[»] chr5 (17 HSPs)
chr5 (113-202)||(19608788-19608877)
chr5 (91-219)||(41174291-41174419)
chr5 (96-204)||(42035749-42035858)
chr5 (99-208)||(41807223-41807331)
chr5 (91-219)||(844735-844863)
chr5 (96-219)||(8611751-8611875)
chr5 (92-218)||(1863100-1863226)
chr5 (91-202)||(9764950-9765062)
chr5 (138-219)||(34903371-34903452)
chr5 (87-184)||(38328661-38328758)
chr5 (119-219)||(2523790-2523890)
chr5 (96-219)||(6562625-6562747)
chr5 (96-147)||(9784383-9784435)
chr5 (92-169)||(950641-950718)
chr5 (92-178)||(6539837-6539923)
chr5 (134-184)||(26449269-26449319)
chr5 (141-187)||(26912692-26912738)
[»] chr6 (18 HSPs)
chr6 (122-217)||(24824921-24825016)
chr6 (96-219)||(30326669-30326792)
chr6 (94-204)||(24396763-24396873)
chr6 (118-211)||(9049990-9050083)
chr6 (113-191)||(342971-343049)
chr6 (113-239)||(2801249-2801377)
chr6 (94-184)||(30456784-30456874)
chr6 (96-211)||(31597514-31597630)
chr6 (91-218)||(2248707-2248836)
chr6 (91-219)||(6067498-6067626)
chr6 (92-218)||(23578763-23578889)
chr6 (96-211)||(2817240-2817357)
chr6 (158-210)||(28478658-28478710)
chr6 (158-210)||(29791113-29791165)
chr6 (99-213)||(7703001-7703115)
chr6 (144-210)||(28738471-28738537)
chr6 (95-176)||(29283202-29283283)
chr6 (95-151)||(18742223-18742279)
[»] chr7 (30 HSPs)
chr7 (100-208)||(28024519-28024626)
chr7 (95-220)||(11662996-11663120)
chr7 (95-208)||(28198004-28198117)
chr7 (91-208)||(49119556-49119673)
chr7 (92-216)||(29559138-29559261)
chr7 (99-187)||(47188446-47188534)
chr7 (93-184)||(38663667-38663758)
chr7 (96-202)||(12837895-12838001)
chr7 (92-169)||(28517785-28517863)
chr7 (135-219)||(7399828-7399912)
chr7 (91-211)||(34004753-34004873)
chr7 (98-187)||(35116886-35116975)
chr7 (107-216)||(35727457-35727566)
chr7 (99-220)||(6707589-6707709)
chr7 (173-218)||(26041917-26041962)
chr7 (94-171)||(30424886-30424963)
chr7 (98-186)||(49142848-49142936)
chr7 (99-186)||(7711906-7711993)
chr7 (99-178)||(35494665-35494744)
chr7 (172-219)||(36586891-36586938)
chr7 (93-148)||(43952496-43952551)
chr7 (91-158)||(44107031-44107098)
chr7 (92-170)||(7728565-7728643)
chr7 (96-158)||(8903017-8903079)
chr7 (91-197)||(24423451-24423557)
chr7 (92-170)||(46683063-46683141)
chr7 (124-197)||(3237311-3237384)
chr7 (102-178)||(5000371-5000448)
chr7 (92-181)||(30824926-30825015)
chr7 (99-202)||(34771914-34772020)
[»] scaffold0074 (1 HSPs)
scaffold0074 (92-208)||(29676-29797)


Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 26009576 - 26009933
Alignment:
Q  1 gaatctaacgagtaaactacaaagagcgtagttttgttttagaccaaactagagagtgtgagaaaatataaaaata-gggtatttgttaacaagggcact 99  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||| |    
T  26009576 gaatctaacgagtaaactacaaagggcgtagttttgttttagaccaaactagagagtgtgagaaaatataaaaatatgggtcttcgttaacaagggcatt 26009675  T
Q  100 tgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagt 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26009676 tgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatattttgaatacacaaattccaagataaagt 26009775  T
Q  200 ttctactttaaatttcttat------------aggcacttgttaacattttcctaaaaatattaaccacttacacatttataaatataattattcattca 287  Q
    || |||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26009776 ttttactttaaatttcttatcaagtgtcttaagggcacttgttaacattttcctaaaaatattaaccacttacacatttataaatataattattcattca 26009875  T
Q  288 cactttcattaatcttatttaaaaattcaacttcattactcaaatactcttcatctca 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26009876 cactttcattaatcttatttaaaaattcaacttcattactcaaatactcttcatctca 26009933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 96 - 219
Target Start/End: Original strand, 8753002 - 8753126
Alignment:
Q  96 cacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgcttttt-aatatttcaatgttttgaatacacaaattccaagat 194  Q
    |||||||||| |||||||||||||||||||||| ||||||| |||| |||||||||||||||| | ||||| ||||| |||||||||||||||  |||||    
T  8753002 cacttgttaatgattctaaaatagaaataattgataactttaatgtgtaaaaagttgctttttgattattttaatgtgttgaatacacaaattttaagat 8753101  T
Q  195 aaagtttctactttaaatttcttat 219  Q
    |||||||||| ||| ||||||||||    
T  8753102 aaagtttctagttttaatttcttat 8753126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 96 - 208
Target Start/End: Complemental strand, 21240244 - 21240132
Alignment:
Q  96 cacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagata 195  Q
    |||||||||||||||  ||||| |||| ||||| ||||||| | ||| ||||||||| |||||||||||||||||| ||||||| |||||| |||| |||    
T  21240244 cacttgttaaggatttaaaaatggaaacaattgataactttcacgtagaaaaagttgttttttaatatttcaatgtgttgaatatacaaatcccaaaata 21240145  T
Q  196 aagtttctacttt 208  Q
    |  ||||||||||    
T  21240144 atatttctacttt 21240132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 99 - 219
Target Start/End: Complemental strand, 27915334 - 27915214
Alignment:
Q  99 ttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaag 198  Q
    ||||||||||||| |||| ||||||||||| ||| ||||||||  ||||||||  |||||||||||| ||||| |||||||||||| ||  ||||||||     
T  27915334 ttgttaaggattcaaaaagagaaataattgataaattttatgttaaaaaagttagtttttaatatttgaatgtgttgaatacacaacttttaagataaac 27915235  T
Q  199 tttctactttaaatttcttat 219  Q
     ||| | ||||||||||||||    
T  27915234 cttccattttaaatttcttat 27915214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 113 - 219
Target Start/End: Complemental strand, 37627042 - 37626936
Alignment:
Q  113 aaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtttctactttaaat 212  Q
    |||||||||| ||||| ||||||||||||| |||||||| ||||||||| ||| ||||| ||||||||||||| ||||||| |||| |||   ||||||     
T  37627042 aaaatagaaacaattgataacttttatgtagaaaaagttactttttaatgtttaaatgtgttgaatacacaaaatccaagacaaagcttcccttttaaac 37626943  T
Q  213 ttcttat 219  Q
    |||||||    
T  37626942 ttcttat 37626936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 91 - 208
Target Start/End: Original strand, 50890683 - 50890801
Alignment:
Q  91 aagggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaa-agttgctttttaatatttcaatgttttgaatacacaaattcc 189  Q
    ||||||| ||||||| | ||  ||||| |||| ||||||||| ||||||||| |||| ||||||||||||| ||||||||   ||||||||| || ||||    
T  50890683 aagggcaattgttaaaggttaaaaaatggaaacaattgctaaattttatgtaaaaaaaagttgctttttaaaatttcaataggttgaatacaaaatttcc 50890782  T
Q  190 aagataaagtttctacttt 208  Q
    |||||||||||||||||||    
T  50890783 aagataaagtttctacttt 50890801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 53234338 - 53234267
Alignment:
Q  95 gcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttc 166  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||| |||||| ||| ||||| |||||||    
T  53234338 gcacttgttaaggattctaaaatagaaataattgataactttcatgtgtaaaaaattgtttttttatatttc 53234267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 92 - 218
Target Start/End: Complemental strand, 4068426 - 4068300
Alignment:
Q  92 agggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaa 191  Q
    |||||||| ||||||||||| |||| ||||| ||||| ||| || |||||| |||||||| ||||||  |||||||||   |  ||||||||| |||||     
T  4068426 agggcactagttaaggattcaaaaaaagaaacaattgttaaattctatgtagaaaaagttactttttggtatttcaataagtcaaatacacaatttccat 4068327  T
Q  192 gataaagtttctactttaaatttctta 218  Q
    ||||||||||||||||| | |||||||    
T  4068326 gataaagtttctacttttagtttctta 4068300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 113 - 219
Target Start/End: Original strand, 23568002 - 23568108
Alignment:
Q  113 aaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtttctactttaaat 212  Q
    |||||| ||||||||| |||||||||| || |||| ||| |||||| || ||||||||| ||||||| ||||||| |||||||||||||| | || |||     
T  23568002 aaaataaaaataattgataacttttatatagaaaatgttactttttgatttttcaatgtattgaatatacaaatttcaagataaagtttccatttaaaac 23568101  T
Q  213 ttcttat 219  Q
    |||||||    
T  23568102 ttcttat 23568108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 89 - 219
Target Start/End: Complemental strand, 39292431 - 39292301
Alignment:
Q  89 acaagggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattc 188  Q
    |||||| |||||||||||| ||||| || ||||| ||||   || ||| ||||| |||||||||||||||||| |||||||   |||||| || || |||    
T  39292431 acaaggacacttgttaaggtttctacaaaagaaaaaattatgaaatttaatgtagaaaaagttgctttttaatctttcaataagttgaatgcataatttc 39292332  T
Q  189 caagataaagtttctactttaaatttcttat 219  Q
    |||||||||||| ||||||||| ||| ||||    
T  39292331 caagataaagttgctactttaagttttttat 39292301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 94 - 220
Target Start/End: Original strand, 54639673 - 54639799
Alignment:
Q  94 ggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaaga 193  Q
    |||| ||||||| ||||  |||||  ||| ||||| || |||| ||||| ||||||||||||||| || ||||||| | || ||||||||||| |||| |    
T  54639673 ggcatttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgctttttgatgtttcaatttgttcaatacacaaatcccaaaa 54639772  T
Q  194 taaagtttctactttaaatttcttata 220  Q
    |||| ||||||||||||| ||||||||    
T  54639773 taaaatttctactttaaacttcttata 54639799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 112 - 211
Target Start/End: Original strand, 4728107 - 4728206
Alignment:
Q  112 taaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtttctactttaaa 211  Q
    ||||||||||||||||| ||| ||||| ||| ||||||||  |||||| ||||||||||| ||||||||| || ||  |||||||| ||| |||||||||    
T  4728107 taaaatagaaataattgataaattttacgtaaaaaaagttaatttttattatttcaatgtcttgaatacataatttttaagataaaatttttactttaaa 4728206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 211
Target Start/End: Original strand, 38547454 - 38547572
Alignment:
Q  93 gggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaag 192  Q
    ||||||| ||||| ||||  |||| ||||||||||| ||| ||||||||  |||||  | ||||||||||||||||||| ||||||||| || || ||||    
T  38547454 gggcactagttaaagatttaaaaaaagaaataattgataaattttatgttaaaaaaactactttttaatatttcaatgtgttgaatacataactttcaag 38547553  T
Q  193 ataaagtttctactttaaa 211  Q
    |||||  ||| ||||||||    
T  38547554 ataaaccttccactttaaa 38547572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 171
Target Start/End: Complemental strand, 48051791 - 48051717
Alignment:
Q  97 acttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgt 171  Q
    ||||||||||||||| |||||||||||||||| ||| ||||||||| |||||||| ||||||  | |||||||||    
T  48051791 acttgttaaggattcaaaaatagaaataattgataaattttatgtagaaaaagttactttttgttgtttcaatgt 48051717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 96 - 248
Target Start/End: Original strand, 37175727 - 37175882
Alignment:
Q  96 cacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagata 195  Q
    |||| ||||||||||| ||||   ||||| |||  || |||||| || |||||  ||||||||||| |||||||   |||||| || || ||||||||||    
T  37175727 cactagttaaggattcaaaaaagaaaatagttgtgaaattttatatagaaaaatgtgctttttaatctttcaataagttgaatgcataatttccaagata 37175826  T
Q  196 aagtttctactttaaatttcttat---aggcacttgttaacattttcctaaaaata 248  Q
    ||||| |||||||||  |||||||    ||||||||||||||||||||| ||||||    
T  37175827 aagttgctactttaagcttcttatcaagggcacttgttaacattttccttaaaata 37175882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 131 - 219
Target Start/End: Original strand, 35911775 - 35911863
Alignment:
Q  131 aacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtttctactttaaatttcttat 219  Q
    |||||||||||||||||| || ||||||||| |||| |||| ||||||||| ||||| ||| | ||  ||||||||||||| |||||||    
T  35911775 aacttttatgtataaaaaattactttttaatgtttctatgtgttgaatacataaatttcaataaaagatttctactttaaacttcttat 35911863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 113 - 211
Target Start/End: Original strand, 51834764 - 51834862
Alignment:
Q  113 aaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtttctactttaaa 211  Q
    ||||||||||||| || ||||||| ||||| | |||||||||||||  | |||||| |  ||||||||||||||| ||||||||| ||| | |||||||    
T  51834764 aaaatagaaataaatgataactttcatgtagataaagttgctttttggtgtttcaacgagttgaatacacaaatttcaagataaaatttttgctttaaa 51834862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 184
Target Start/End: Complemental strand, 22478128 - 22478036
Alignment:
Q  91 aagggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaa 184  Q
    |||||||||| ||||| |||  ||||| |||| ||||| ||||||||||| | ||||||||| |||||  ||||||||||| ||||||||||||    
T  22478128 aagggcacttattaagcatta-aaaatggaaacaattgataacttttatggagaaaaagttggtttttgttatttcaatgtgttgaatacacaa 22478036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 91 - 242
Target Start/End: Original strand, 34701196 - 34701344
Alignment:
Q  91 aagggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattcca 190  Q
    ||||||||||||||||||||| ||| ||||||| |||| | | ||||||||| |||||||| | ||||  | ||| ||| | ||||||  |||| |||||    
T  34701196 aagggcacttgttaaggattcaaaattagaaatgattgatgagttttatgtagaaaaagttaccttttgttgttttaatttgttgaatgtacaatttcca 34701295  T
Q  191 agataaagtttctactttaaatttcttataggcacttgttaacattttccta 242  Q
    || ||||||||| | ||| ||||| |  | ||||||||||| ||||||||||    
T  34701296 aggtaaagtttcca-ttttaatttgt--tgggcacttgttagcattttccta 34701344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 219
Target Start/End: Complemental strand, 5497860 - 5497741
Alignment:
Q  101 gttaaggattct-aaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagt 199  Q
    |||||||||||  ||||| |||| | ||| ||||||||||||| |||||||| |||||| || ||||| ||| || |||||| |||||  |||||||| |    
T  5497860 gttaaggattcagaaaatggaaacagttgataacttttatgtagaaaaagttactttttgatgtttcattgtattaaatacataaattttaagataaaat 5497761  T
Q  200 ttctactttaaatttcttat 219  Q
    ||| | ||||||||| ||||    
T  5497760 ttccattttaaatttgttat 5497741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 219
Target Start/End: Complemental strand, 50620732 - 50620606
Alignment:
Q  92 agggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaa 191  Q
    |||||| | |||||||| || ||||  |||||||||   || |||||| || |||||||||||||||| |||||||||   |||||| ||||| ||||||    
T  50620732 agggcaatggttaaggaatcaaaaaaggaaataattatgaaattttatatagaaaaagttgctttttactatttcaataagttgaatgcacaatttccaa 50620633  T
Q  192 gataaagtttctactttaaatttcttat 219  Q
    |||||| || ||| ||||| ||||||||    
T  50620632 gataaatttacta-tttaagtttcttat 50620606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 187
Target Start/End: Complemental strand, 20032639 - 20032566
Alignment:
Q  113 aaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaatt 187  Q
    |||||||||| ||||| ||||||||||||| ||||| || ||||||||| |||||||   |||||||||||||||    
T  20032639 aaaatagaaacaattgataacttttatgta-aaaaaattactttttaatgtttcaatccgttgaatacacaaatt 20032566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 206
Target Start/End: Original strand, 24157757 - 24157866
Alignment:
Q  96 cacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagata 195  Q
    ||||||||||| || | |||||| ||||||||| ||||||| ||  | | ||||||||||||| || ||| ||||| |||||||||||| ||| || |||    
T  24157757 cacttgttaagaatccaaaaataaaaataattgataactttcataga-ataaagttgctttttgatgttttaatgtgttgaatacacaagttcaaaaata 24157855  T
Q  196 aagtttctact 206  Q
    || ||||||||    
T  24157856 aaatttctact 24157866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 211
Target Start/End: Complemental strand, 36363684 - 36363575
Alignment:
Q  101 gttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtt 200  Q
    |||||||||||||||||||||||||||| |||  |||||||| ||||| || ||||| ||  ||||||||| |||||| ||  ||| |||| | ||| ||    
T  36363684 gttaaggattctaaaatagaaataattggtaagatttatgtagaaaaaattacttttcaa-gtttcaatgtgttgaatgcatcaatcccaaaacaaaatt 36363586  T
Q  201 tctactttaaa 211  Q
    ||| |||||||    
T  36363585 tcttctttaaa 36363575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 218
Target Start/End: Original strand, 43921089 - 43921207
Alignment:
Q  100 tgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagt 199  Q
    |||||||||||| ||| ||||||| |||  | | ||||||||  |||||||| ||||||  | ||||||||| |||||| ||||| ||||||| ||||||    
T  43921089 tgttaaggattcaaaactagaaatgattcatgaattttatgttgaaaaagttactttttgttctttcaatgtgttgaatgcacaatttccaaggtaaagt 43921188  T
Q  200 ttctactttaaatttctta 218  Q
    | | | |||||| ||||||    
T  43921189 tcccattttaaacttctta 43921207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 193
Target Start/End: Original strand, 4197190 - 4197290
Alignment:
Q  93 gggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaag 192  Q
    ||||||||||||||||||| |||   ||||| |||  ||| ||||||||| ||||||||  ||||| |  |||||| || |||||||||||| |||||||    
T  4197190 gggcacttgttaaggattcaaaagaggaaatgatttataaattttatgtagaaaaagttatttttttaagtttcaaggtgttgaatacacaatttccaag 4197289  T
Q  193 a 193  Q
    |    
T  4197290 a 4197290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 186
Target Start/End: Original strand, 6336283 - 6336374
Alignment:
Q  94 ggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaat 186  Q
    ||||||||||||  |||  ||||| |||| ||||  ||| ||||| ||| ||||||||| ||||| |||||||||||| ||||||||||||||    
T  6336283 ggcacttgttaaatattaaaaaattgaaacaattagtaagttttaggta-aaaaagttgttttttgatatttcaatgtgttgaatacacaaat 6336374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 218
Target Start/End: Complemental strand, 24858752 - 24858624
Alignment:
Q  91 aagggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaag-ttgctttttaatatttcaatgttttgaatacacaaattcc 189  Q
    |||||||||  |||||||||| | |||| ||||||||| ||| |||||| || |||||  || |||||||| |||||||||  |||||| ||  | ||||    
T  24858752 aagggcactacttaaggattcaagaataaaaataattgataagttttatctaaaaaaaaattactttttaaaatttcaatgcattgaatgcatcatttcc 24858653  T
Q  190 aagataaagtttctactttaaatttctta 218  Q
    |||| ||||||||||| ||| | ||||||    
T  24858652 aagacaaagtttctacgttagacttctta 24858624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 218
Target Start/End: Original strand, 25098886 - 25099008
Alignment:
Q  96 cacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagata 195  Q
    |||||||||||||||| ||| ||||||| |||| | |  |||| ||| ||||| || ||||||  | || |||| | || ||||||||||||  ||||||    
T  25098886 cacttgttaaggattcaaaattagaaatgattgatgaaatttaagtagaaaaaattactttttgttgttacaatatattaaatacacaaattttaagata 25098985  T
Q  196 aagtttctactttaaatttctta 218  Q
    || |||||| |||||| ||||||    
T  25098986 aaatttctaatttaaacttctta 25099008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 33881906 - 33881967
Alignment:
Q  147 aagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtttctacttt 208  Q
    ||||| |||||||| |||||||||| |||||||||||| || ||||| ||| ||||| ||||    
T  33881906 aagttactttttaaaatttcaatgtgttgaatacacaattttcaagagaaaatttcttcttt 33881967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 197
Target Start/End: Complemental strand, 31917738 - 31917626
Alignment:
Q  85 gttaacaagggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaa 184  Q
    ||||| |||| |||||||||||||||| |||||| | ||||||  ||| ||||||||| ||||| |   |||||  | |||||||||||| ||| |||||    
T  31917738 gttaataaggacacttgttaaggattcaaaaataaatataatttataaattttatgtagaaaaaataattttttgttgtttcaatgttttaaatgcacaa 31917639  T
Q  185 attccaagataaa 197  Q
     || ||| |||||    
T  31917638 ttttcaaaataaa 31917626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 218
Target Start/End: Original strand, 37177140 - 37177220
Alignment:
Q  138 atgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtttctactttaaatttctta 218  Q
    |||| |||||||||| |||||||  ||| || || ||||||| ||||||| ||||||| | ||| || |||||||||||||    
T  37177140 atgtttaaaaagttgatttttaaagttttaacgtgttgaatatacaaatttcaagatacaatttttaatttaaatttctta 37177220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 92 - 219
Target Start/End: Complemental strand, 7445037 - 7444910
Alignment:
Q  92 agggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaa 191  Q
    |||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||  |||    
T  7445037 agggcacttgttaaagattctaaaatagaaataattgataactttcatgtataaaaagttgctttttgatatttcaatgtgttgaatacacaaatctcaa 7444938  T
Q  192 gataaagtttctactttaaatttcttat 219  Q
    |||||||||||| |||| ||||||||||    
T  7444937 gataaagtttcttctttgaatttcttat 7444910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 93 - 219
Target Start/End: Complemental strand, 52698554 - 52698428
Alignment:
Q  93 gggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaag 192  Q
    ||||||||||||||||||  ||||| |||| ||||| ||||||||||| | ||||||||| |||||  ||||||||||| |||||||||||| | |||||    
T  52698554 gggcacttgttaaggattaaaaaatggaaacaattgataacttttatggagaaaaagttgttttttgttatttcaatgtgttgaatacacaattcccaag 52698455  T
Q  193 ataaagtttctactttaaatttcttat 219  Q
    | ||| ||||||||||| | |||||||    
T  52698454 aaaaaatttctactttagacttcttat 52698428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 96 - 219
Target Start/End: Original strand, 27262735 - 27262859
Alignment:
Q  96 cacttgttaaggattctaaaa-tagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagat 194  Q
    |||||||||||||||| |||| |||||| ||||| ||||||||||||| ||||| || ||||||||| ||| ||||| |||||||||||||||| ||||     
T  27262735 cacttgttaaggattcaaaaaatagaaacaattgataacttttatgtagaaaaaattactttttaatgttttaatgtgttgaatacacaaattctaagac 27262834  T
Q  195 aaagtttctactttaaatttcttat 219  Q
    ||| |||| | |||||| |||||||    
T  27262835 aaaatttccattttaaacttcttat 27262859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 96 - 187
Target Start/End: Complemental strand, 47235596 - 47235505
Alignment:
Q  96 cacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaatt 187  Q
    ||||||||||| |||| |||||||||| ||||| ||||||| ||||| | |||||||||||||||| ||||||| | |||||||||||||||    
T  47235596 cacttgttaagaattcaaaaatagaaacaattgataactttcatgtaaataaagttgctttttaatgtttcaatttgttgaatacacaaatt 47235505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 94 - 204
Target Start/End: Complemental strand, 3550457 - 3550349
Alignment:
Q  94 ggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaaga 193  Q
    |||||||||||||||||| |||| || |||||||| ||| ||||||||| |||||| ||| ||||||||||||||| | |||| ||||||| || |||||    
T  3550457 ggcacttgttaaggattcgaaaaaaggaataattggtaaattttatgtagaaaaag-tgc-ttttaatatttcaatatgttgattacacaattttcaaga 3550360  T
Q  194 taaagtttcta 204  Q
    |||||||||||    
T  3550359 taaagtttcta 3550349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 92 - 178
Target Start/End: Original strand, 34620608 - 34620694
Alignment:
Q  92 agggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaat 178  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||| || |||||| |  ||||||||| ||||||    
T  34620608 agggcacttgttaaggattctaaaatagaaataattggtaagttttatgtagaaaaaattactttttcaagtttcaatgtgttgaat 34620694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 211
Target Start/End: Original strand, 49805947 - 49806076
Alignment:
Q  83 ttgttaacaagggcacttgttaaggattctaaaa-tagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaataca 181  Q
    |||||||||||||||| |||||| ||||  |||| |||||| ||||  ||||||||||||| |||||||| |||||| |||||| ||||| |||||| ||    
T  49805947 ttgttaacaagggcacatgttaaagatttaaaaaatagaaacaatttataacttttatgtagaaaaagttacttttttatattttaatgtgttgaatgca 49806046  T
Q  182 caaattccaagataaagtttctactttaaa 211  Q
    |||||| ||||| ||| ||| || ||||||    
T  49806047 caaatttcaagacaaaatttttattttaaa 49806076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 198
Target Start/End: Complemental strand, 39527120 - 39527013
Alignment:
Q  91 aagggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattcca 190  Q
    ||||||||||||||||||||| ||| | |||||||| | ||| ||||||||| |||||||| ||||||  | ||||||||  |||||| ||||| |||||    
T  39527120 aagggcacttgttaaggattcaaaattggaaataatcgataaattttatgtagaaaaagttcctttttgttgtttcaatgggttgaatgcacaatttcca 39527021  T
Q  191 agataaag 198  Q
    ||||||||    
T  39527020 agataaag 39527013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 97 - 201
Target Start/End: Original strand, 50015549 - 50015654
Alignment:
Q  97 acttgttaaggattctaaaa-tagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagata 195  Q
    |||||||||| |||| |||| |||||| ||||| ||| |||| ||||||||||||| |||||| || ||| ||||| ||||||| ||||||||||||| |    
T  50015549 acttgttaagaattcaaaaaatagaaacaattgataaattttttgtataaaaagttactttttgatttttgaatgtgttgaatatacaaattccaagaca 50015648  T
Q  196 aagttt 201  Q
    ||||||    
T  50015649 aagttt 50015654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 98 - 197
Target Start/End: Original strand, 24980816 - 24980915
Alignment:
Q  98 cttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaa 197  Q
    |||||||||||| | |||||| ||| ||||| ||| ||||||||| |  ||||||||||||  | ||||||||| |||||||||||||||| ||||||||    
T  24980816 cttgttaaggatccaaaaatataaacaattgataatttttatgtagattaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaa 24980915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 98 - 197
Target Start/End: Original strand, 24989574 - 24989673
Alignment:
Q  98 cttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaa 197  Q
    |||||||||||| | |||||| ||| ||||| ||| ||||||||| |  ||||||||||||  | ||||||||| |||||||||||||||| ||||||||    
T  24989574 cttgttaaggatccaaaaatataaacaattgataatttttatgtagattaagttgctttttgttgtttcaatgtgttgaatacacaaattctaagataaa 24989673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 219
Target Start/End: Original strand, 42592692 - 42592798
Alignment:
Q  113 aaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtttctactttaaat 212  Q
    |||| ||||||||||| ||| ||||||||  ||||| || ||||||||  ||||||||  |||||||||||| ||||||||||||  ||| ||||||||     
T  42592692 aaaaaagaaataattgataaattttatgttgaaaaaattactttttaacgtttcaatgggttgaatacacaacttccaagataaaccttccactttaaac 42592791  T
Q  213 ttcttat 219  Q
    |||||||    
T  42592792 ttcttat 42592798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 196
Target Start/End: Complemental strand, 32003131 - 32003031
Alignment:
Q  96 cacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagata 195  Q
    |||||||| | |||||||||||||||| ||||| ||| | ||||||| ||||| ||| ||||| |||||||||| | |||||||| ||||| |||| |||    
T  32003131 cacttgtttaagattctaaaatagaaacaattgataaatcttatgtagaaaaaattgttttttgatatttcaatatgttgaatacgcaaatcccaaaata 32003032  T
Q  196 a 196  Q
    |    
T  32003031 a 32003031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 211
Target Start/End: Complemental strand, 44698121 - 44698034
Alignment:
Q  124 aattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtttctactttaaa 211  Q
    ||||| ||| ||||||||  |||||||| ||||||||| ||||||| | |||||||||||| ||||||||||||  ||| ||||||||    
T  44698121 aattgataaattttatgttgaaaaagttactttttaatgtttcaatatgttgaatacacaacttccaagataaaacttccactttaaa 44698034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 219
Target Start/End: Original strand, 47019008 - 47019083
Alignment:
Q  144 aaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtttctactttaaatttcttat 219  Q
    ||||| ||||||||| |||||||||||| |||||| || ||||||||||| |||  ||| |||||||| |||||||    
T  47019008 aaaaaattgctttttgatatttcaatgtattgaatgcaaaaattccaagaaaaaacttccactttaaacttcttat 47019083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 219
Target Start/End: Original strand, 31963041 - 31963107
Alignment:
Q  153 ctttttaatatttcaatgttttgaatacacaaattccaagataaagtttctactttaaatttcttat 219  Q
    ||||||||| ||||||||| ||||||||||||||||||| | ||| |||| | |||||| |||||||    
T  31963041 ctttttaatgtttcaatgtgttgaatacacaaattccaaaacaaaatttccattttaaacttcttat 31963107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 32161637 - 32161583
Alignment:
Q  97 acttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagtt 151  Q
    ||||||||| ||||| |||||||||||||||| ||| ||||||||| ||||||||    
T  32161637 acttgttaatgattcaaaaatagaaataattgataaattttatgtagaaaaagtt 32161583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 209
Target Start/End: Original strand, 49899020 - 49899138
Alignment:
Q  91 aagggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattcca 190  Q
    ||||||| || || ||||||| ||| |||||||||||| ||| ||||||||| || || || ||||| || |||||||||| |||||| ||  | |||||    
T  49899020 aagggcatttatttaggattcaaaagtagaaataattggtaagttttatgtaaaataaattacttttcaaaatttcaatgtgttgaatgcatcatttcca 49899119  T
Q  191 agataaagtttctacttta 209  Q
    | | ||||||||| |||||    
T  49899120 aaacaaagtttctgcttta 49899138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 208
Target Start/End: Original strand, 36995221 - 36995338
Alignment:
Q  92 agggcacttgttaaggattctaaaatagaaataattgct-aacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattcca 190  Q
    |||||||||||||||||| | ||||| |||||||||| | || ||||| ||| |||||||| |||| ||| |||||||||  |||||| ||| | |||||    
T  36995221 agggcacttgttaaggatacaaaaatggaaataattggtaaatttttaagtagaaaaagttactttataaaatttcaatgcattgaatgcaccatttcca 36995320  T
Q  191 agataaagtttctacttt 208  Q
    | | ||| ||||| ||||    
T  36995321 aaacaaaatttcttcttt 36995338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 219
Target Start/End: Complemental strand, 44529372 - 44529252
Alignment:
Q  99 ttgttaaggattctaaaatagaaa-taattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaa 197  Q
    |||||||| ||| ||||| ||||| |||||| ||| ||||||||  |||||||| ||||||||| ||| ||| | |||||||||||| ||  ||||||||    
T  44529372 ttgttaagaattttaaaa-agaaagtaattgataaattttatgttgaaaaagttactttttaatgttttaatatgttgaatacacaacttttaagataaa 44529274  T
Q  198 gtttctactttaaatttcttat 219  Q
      ||| |||||||| |||||||    
T  44529273 acttccactttaaacttcttat 44529252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 46369688 - 46369635
Alignment:
Q  99 ttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttg 152  Q
    ||||||||||||| |||||||||||||||| ||| |||||| || |||||||||    
T  46369688 ttgttaaggattcaaaaatagaaataattgataaattttatataaaaaaagttg 46369635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 168
Target Start/End: Complemental strand, 2507092 - 2507037
Alignment:
Q  113 aaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaa 168  Q
    |||||||||||||||| ||| |||||| |||||||| || |||||||| |||||||    
T  2507092 aaaatagaaataattgataaattttatatataaaaaattactttttaaaatttcaa 2507037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 11451933 - 11451866
Alignment:
Q  144 aaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtttctactttaaa 211  Q
    |||||||| |||||||||||||||| || ||||||||| || |  ||| ||||| |||||||||||||    
T  11451933 aaaaagttactttttaatatttcaacgtgttgaatacataactctcaatataaaatttctactttaaa 11451866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 210
Target Start/End: Original strand, 32745617 - 32745727
Alignment:
Q  99 ttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaag 198  Q
    |||||||| |||| |||||||||||||||| ||| ||| ||||| |||    || ||||| || ||||||||| |||| ||||||| ||||||  ||||     
T  32745617 ttgttaagtattcgaaaatagaaataattgataaattt-atgtagaaacgactgttttttgatgtttcaatgtgttgattacacaatttccaatgtaaaa 32745715  T
Q  199 tttctactttaa 210  Q
    ||||||||||||    
T  32745716 tttctactttaa 32745727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 51972064 - 51972123
Alignment:
Q  92 agggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagtt 151  Q
    |||||||| ||||||||||||||| || ||||||||| ||| ||||||||  ||||||||    
T  51972064 agggcactagttaaggattctaaattaaaaataattggtaaattttatgttgaaaaagtt 51972123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 219
Target Start/End: Original strand, 12806993 - 12807081
Alignment:
Q  130 taacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtttctactttaaatttcttat 219  Q
    ||||||||||||| ||||| ||| ||||| ||   ||||||| ||||||| | ||||||||||||||| |||| | |||||| |||||||    
T  12806993 taacttttatgtagaaaaaattgttttttgatgaatcaatgtattgaatataaaaattccaagataaattttc-attttaaacttcttat 12807081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 250
Target Start/End: Original strand, 25129977 - 25130006
Alignment:
Q  221 ggcacttgttaacattttcctaaaaatatt 250  Q
    ||||||||||||||||||||||||||||||    
T  25129977 ggcacttgttaacattttcctaaaaatatt 25130006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 208
Target Start/End: Complemental strand, 42724494 - 42724380
Alignment:
Q  92 agggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaa 191  Q
    |||| ||||||||||||||  |||||| ||||||||| | | |||||  |||| |||| | ||||||  ||||| ||||| |||||||||||| ||  ||    
T  42724494 agggtacttgttaaggatttaaaaataaaaataattgttgaatttta--tatagaaaggttctttttgttattttaatgtgttgaatacacaatttttaa 42724397  T
Q  192 gataaagtttctacttt 208  Q
    |||||| |||| |||||    
T  42724396 gataaaatttccacttt 42724380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 218
Target Start/End: Original strand, 1862121 - 1862193
Alignment:
Q  146 aaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtttctactttaaatttctta 218  Q
    |||||||||||||||  ||  ||||| ||||||||| |||| |||| ||||| |||||  |||||||||||||    
T  1862121 aaagttgctttttaaagttataatgtattgaatacataaatcccaaaataaaatttcttatttaaatttctta 1862193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 218
Target Start/End: Complemental strand, 45584437 - 45584320
Alignment:
Q  99 ttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaag 198  Q
    ||||||||||||| | |||||||||||||| | |   ||||||| ||||||||  |||||||  || |||||  ||||||||| || || ||||||| ||    
T  45584437 ttgttaaggattcaagaatagaaataattgatta--gttatgtaaaaaaagttattttttaaagttccaatgcattgaatacataattttcaagatatag 45584340  T
Q  199 tttctactttaaatttctta 218  Q
    ||||| ||||| | ||||||    
T  45584339 tttcttctttagacttctta 45584320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 113 - 218
Target Start/End: Original strand, 14548170 - 14548278
Alignment:
Q  113 aaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatt---tcaatgttttgaatacacaaattccaagataaagtttctacttta 209  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||   |||| || ||||||||||||||||||||||||||||||||||||     
T  14548170 aaaatagaaataattgctaacttttatgtgtaaaaagttgctttttgatattatttcaacgtgttgaatacacaaattccaagataaagtttctactttg 14548269  T
Q  210 aatttctta 218  Q
    |||||||||    
T  14548270 aatttctta 14548278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 92 - 219
Target Start/End: Complemental strand, 32615958 - 32615831
Alignment:
Q  92 agggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaa 191  Q
    |||| ||||||||| ||| | |||||||||| ||||| ||||||| ||||| | ||||||| |||||||| ||||||||| |||||||||| ||||||||    
T  32615958 agggtacttgttaaagatccaaaaatagaaacaattgataactttcatgtaaataaagttgttttttaatgtttcaatgtgttgaatacacgaattccaa 32615859  T
Q  192 gataaagtttctactttaaatttcttat 219  Q
    |||||| ||||||||||||| |||||||    
T  32615858 gataaaatttctactttaaacttcttat 32615831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 92 - 219
Target Start/End: Complemental strand, 41570160 - 41570037
Alignment:
Q  92 agggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaa 191  Q
    |||||||||||||||| ||| |||||||||||||||| ||| ||| || | ||||||    |||||| |||||||||||| ||||||||| |||| ||||    
T  41570160 agggcacttgttaaggtttccaaaatagaaataattgataattttcatatgtaaaaa----ctttttgatatttcaatgtgttgaatacataaatcccaa 41570065  T
Q  192 gataaagtttctactttaaatttcttat 219  Q
    |||||| |||||||||||||||||||||    
T  41570064 gataaaatttctactttaaatttcttat 41570037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 96 - 219
Target Start/End: Original strand, 13521699 - 13521822
Alignment:
Q  96 cacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagata 195  Q
    |||||||||||||| | |||||||||||||||| ||||||| ||||| | ||| ||  |||||||| ||||||||| | ||||||||||||| ||| |||    
T  13521699 cacttgttaaggatacaaaaatagaaataattgataactttcatgtaaataaaattattttttaatgtttcaatgtgtagaatacacaaatttcaaaata 13521798  T
Q  196 aagtttctactttaaatttcttat 219  Q
    || ||||||||||||| |||||||    
T  13521799 aaatttctactttaaacttcttat 13521822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 96 - 219
Target Start/End: Original strand, 13611234 - 13611357
Alignment:
Q  96 cacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagata 195  Q
    |||||||||||||| | |||||||||||||||| ||||||| ||||| | ||| ||  |||||||| ||||||||| | ||||||||||||| ||| |||    
T  13611234 cacttgttaaggatacaaaaatagaaataattgataactttcatgtaaataaaattattttttaatgtttcaatgtgtagaatacacaaatttcaaaata 13611333  T
Q  196 aagtttctactttaaatttcttat 219  Q
    || ||||||||||||| |||||||    
T  13611334 aaatttctactttaaacttcttat 13611357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 97 - 219
Target Start/End: Complemental strand, 13244788 - 13244666
Alignment:
Q  97 acttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataa 196  Q
    ||||||||| ||||| |||||||||| ||||| ||||||||||||| | ||| ||| ||||| |||||||||| | |||||||||||||||| || ||||    
T  13244788 acttgttaatgattcaaaaatagaaacaattgataacttttatgtagacaaaattgttttttgatatttcaatatattgaatacacaaattctaaaataa 13244689  T
Q  197 agtttctactttaaatttcttat 219  Q
    | |||||| || |||||||||||    
T  13244688 aatttctatttaaaatttcttat 13244666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 113 - 219
Target Start/End: Complemental strand, 29912240 - 29912134
Alignment:
Q  113 aaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtttctactttaaat 212  Q
    ||||||||||||| || ||||||  ||||| | ||||||||||||| || ||||||||  |||||||||||||||  |||||||| |||||||||||||     
T  29912240 aaaatagaaataaatgataacttccatgtagataaagttgctttttgatgtttcaatgagttgaatacacaaattttaagataaaatttctactttaaac 29912141  T
Q  213 ttcttat 219  Q
    |||||||    
T  29912140 ttcttat 29912134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 99 - 219
Target Start/End: Original strand, 28626634 - 28626754
Alignment:
Q  99 ttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaag 198  Q
    ||||||| ||| | |||||||||||||||| ||| ||| ||||| | ||||||| ||||| || ||||||||| ||||| ||| ||||| |||||||||     
T  28626634 ttgttaaagatccaaaaatagaaataattgttaagtttcatgtaaataaagttgttttttgatgtttcaatgtattgaagacataaatttcaagataaat 28626733  T
Q  199 tttctactttaaatttcttat 219  Q
    ||| ||||||||| |||||||    
T  28626734 tttttactttaaacttcttat 28626754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 103 - 219
Target Start/End: Complemental strand, 42964896 - 42964781
Alignment:
Q  103 taaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtttc 202  Q
    |||||| || ||||| |||||||||| ||||||| ||||| ||||||||  ||||| || ||||||||| |||||||||| ||| |||||||||| ||||    
T  42964896 taaggactcaaaaatggaaataattgataactttcatgtagaaaaagttattttttgatgtttcaatgtgttgaatacac-aatcccaagataaaatttc 42964798  T
Q  203 tactttaaatttcttat 219  Q
     |||||||| |||||||    
T  42964797 cactttaaacttcttat 42964781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 218
Target Start/End: Original strand, 14955199 - 14955335
Alignment:
Q  82 tttgttaacaagggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaataca 181  Q
    |||| ||||||||||||||||||||||||| ||||||||||||| |   || ||||||  | |||||||| ||||||||  ||||||||| |||||| ||    
T  14955199 tttgctaacaagggcacttgttaaggattcaaaaatagaaataacttagaagttttataaagaaaaagttactttttaaactttcaatgtgttgaatgca 14955298  T
Q  182 caaattccaagataaagtttctactttaaatttctta 218  Q
      | ||||||||||||  |||  ||||||| ||||||    
T  14955299 tcatttccaagataaaacttcctctttaaaattctta 14955335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 96 - 213
Target Start/End: Complemental strand, 34085437 - 34085321
Alignment:
Q  96 cacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagata 195  Q
    |||||||||||||| | |||||||||||||||| ||||||| ||| |  | ||||| |||||| ||  |||||||| ||||||||||||  | ||| |||    
T  34085437 cacttgttaaggatccaaaaatagaaataattgataactttcatgga-gataagttactttttgatgattcaatgtgttgaatacacaagcttcaatata 34085339  T
Q  196 aagtttctactttaaatt 213  Q
    || |||||||||||||||    
T  34085338 aaatttctactttaaatt 34085321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 144 - 218
Target Start/End: Original strand, 26738514 - 26738588
Alignment:
Q  144 aaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtttctactttaaatttctta 218  Q
    ||||||||| |||||||| ||||||| | ||||||||||| ||| || |||||| ||||||||||||| ||||||    
T  26738514 aaaaagttgatttttaatgtttcaatatgttgaatacacatatttcaggataaaatttctactttaaacttctta 26738588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 216
Target Start/End: Original strand, 11766473 - 11766598
Alignment:
Q  92 agggcacttgttaaggattctaaaatagaaataattgctaacttttatgta-taaaaagttgctttttaatatttcaatgttttgaatacacaaattcca 190  Q
    |||||||||||||| ||||| |||||||| ||| ||| ||| |||||||||  ||||| || ||||||  | ||||||||| |||||| ||||| || ||    
T  11766473 agggcacttgttaaagattcaaaaatagagatatttgttaaattttatgtagaaaaaaattactttttgttgtttcaatgtcttgaatgcacaattttca 11766572  T
Q  191 agataaagtttctactttaaatttct 216  Q
    || |||| |||| |||||||| ||||    
T  11766573 aggtaaaatttccactttaaacttct 11766598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 211
Target Start/End: Original strand, 15808689 - 15808776
Alignment:
Q  124 aattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtttctactttaaa 211  Q
    ||||| ||| |||||||||||||||||| ||||||||| |||||||   || ||||||||| ||  |||||||| || ||||||||||    
T  15808689 aattgttaaattttatgtataaaaagttcctttttaatctttcaataagttaaatacacaatttttaagataaaattgctactttaaa 15808776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 237
Target Start/End: Complemental strand, 17922148 - 17922038
Alignment:
Q  130 taacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtttctactttaaatttcttat--ag-gcact 226  Q
    ||||||||||||| ||||| ||||||||| || ||| ||| | ||||||| |||||| | |||| |||||||| | || |||||||||||  || |||||    
T  17922148 taacttttatgtagaaaaaattgcttttttattttttaatatgttgaatatacaaatcctaagacaaagtttccatttaaaatttcttatcaagtgcact 17922049  T
Q  227 tgttaacattt 237  Q
    |||||||||||    
T  17922048 tgttaacattt 17922038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 178
Target Start/End: Original strand, 37953243 - 37953325
Alignment:
Q  96 cacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaat 178  Q
    |||||||||||||||| |||||||||||||||| ||| ||||||  | ||| | || |||||||| ||||| |||| ||||||    
T  37953243 cacttgttaaggattcaaaaatagaaataattgataaattttataaaaaaataattactttttaacatttcgatgtgttgaat 37953325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 207
Target Start/End: Original strand, 43799134 - 43799247
Alignment:
Q  96 cacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgcttttt--aatatttcaatgttttgaatacacaaattccaaga 193  Q
    |||||||||||||| | ||||||  || ||||| ||||||||||||| | ||| |||  ||||  ||||||||||||| ||||||| |||||||  ||||    
T  43799134 cacttgttaaggatccaaaaataagaacaattgataacttttatgtagataaaattgtatttttaaatatttcaatgtgttgaatagacaaattttaaga 43799233  T
Q  194 taaagtttctactt 207  Q
    |||  |||||||||    
T  43799234 taatatttctactt 43799247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 193
Target Start/End: Original strand, 39900259 - 39900352
Alignment:
Q  99 ttgttaaggattctaaaa-tagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaaga 193  Q
    ||||||||||||| |||| |||||||||||| |||||||||||  |||||| || |||||| || ||| ||||| ||||||  ||||||| |||||    
T  39900259 ttgttaaggattcaaaaaatagaaataattgataacttttatg--taaaaaattactttttgatgttttaatgtgttgaatgtacaaatttcaaga 39900352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 218
Target Start/End: Original strand, 471993 - 472115
Alignment:
Q  95 gcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagat 194  Q
    ||||| |||||| |||  || ||||||||||||   || ||||||||| | |||||| ||||||||  ||||||||| |||||||||  | |||||| ||    
T  471993 gcactagttaagaatttaaatatagaaataatttacaagttttatgtagataaagttactttttaaactttcaatgtgttgaatacatcatttccaa-at 472091  T
Q  195 aaagtttctactttaaatttctta 218  Q
    ||| |||||  |||||||||||||    
T  472092 aaaatttcttttttaaatttctta 472115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 202
Target Start/End: Original strand, 6939000 - 6939083
Alignment:
Q  119 gaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtttc 202  Q
    |||||||||  ||| ||||||||||| |||||| |||||| |  |||||||| ||||||||||||| | |||| | ||||||||    
T  6939000 gaaataatttataaattttatgtatataaagtttctttttgaagtttcaatgctttgaatacacaattcccaaaaaaaagtttc 6939083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 10409680 - 10409747
Alignment:
Q  144 aaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtttctactttaaa 211  Q
    |||||||| |||||| || ||| ||||| || ||||||||| || |||||||||||||||| ||||||    
T  10409680 aaaaagttactttttgatgttttaatgtgttaaatacacaagtttcaagataaagtttctattttaaa 10409747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 211
Target Start/End: Original strand, 41235827 - 41235930
Alignment:
Q  103 taaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtttc 202  Q
    ||||||||| ||||| |||| ||||| ||| ||| ||||| ||||||||| ||||| || |||    || |||||||||||||| ||||| |||| ||||    
T  41235827 taaggattcaaaaatggaaacaattgataaatttcatgtagaaaaagttgttttttgatgttt----gtgttgaatacacaaatcccaag-taaaatttc 41235921  T
Q  203 tactttaaa 211  Q
    |||||||||    
T  41235922 tactttaaa 41235930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 41909445 - 41909508
Alignment:
Q  154 tttttaatatttcaatgttttgaatacacaaattccaagataaagtttctactttaaatttctt 217  Q
    |||||||||||||||| | ||||||||||| ||| ||||||||| |||  |||||||| |||||    
T  41909445 tttttaatatttcaatatgttgaatacacagatttcaagataaatttttcactttaaacttctt 41909508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 169
Target Start/End: Original strand, 45312730 - 45312803
Alignment:
Q  95 gcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaat 169  Q
    ||||||||||||||||| ||||  |||||||||| ||| ||| ||||  |||| ||||||||||||| |||||||    
T  45312730 gcacttgttaaggattcaaaaaatgaaataattgttaaatttcatgt-gaaaacgttgctttttaatctttcaat 45312803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 211
Target Start/End: Original strand, 3036505 - 3036582
Alignment:
Q  134 ttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtttctactttaaa 211  Q
    ||||||||  ||||||||| |||||||| ||| |||   |||||||||||| ||  ||||||||||| ||||||||||    
T  3036505 ttttatgtgaaaaaagttgttttttaatcttttaataagttgaatacacaatttttaagataaagttgctactttaaa 3036582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 211
Target Start/End: Original strand, 7859151 - 7859228
Alignment:
Q  134 ttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtttctactttaaa 211  Q
    ||||||||  |||||||| ||||||||| ||| ||||| |||||||||||| ||  |||||||| || | ||||||||    
T  7859151 ttttatgttgaaaaagttactttttaatgttttaatgtgttgaatacacaacttaaaagataaaattaccactttaaa 7859228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 99 - 219
Target Start/End: Original strand, 15496132 - 15496252
Alignment:
Q  99 ttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaag 198  Q
    ||||||||||||| |||||| ||||||||| ||||||| |||| | |||||||||||||| ||| |||||| | |||||||||||||| |||||||||||    
T  15496132 ttgttaaggattccaaaatataaataattgataactttcatgtgttaaaagttgctttttgataattcaatatgttgaatacacaaatcccaagataaag 15496231  T
Q  199 tttctactttaaatttcttat 219  Q
    || ||||||||||||||||||    
T  15496232 ttcctactttaaatttcttat 15496252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 95 - 216
Target Start/End: Original strand, 23512730 - 23512851
Alignment:
Q  95 gcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagat 194  Q
    ||||||||||| ||||| ||||||||||||||||  || ||||||| | |||| ||| ||||||  | ||||||||| |||||| ||||| | |||||||    
T  23512730 gcacttgttaaagattccaaaatagaaataattgacaaattttatggagaaaatgttactttttgttgtttcaatgtcttgaatgcacaattcccaagat 23512829  T
Q  195 aaagtttctactttaaatttct 216  Q
    ||| ||| ||||||||||||||    
T  23512830 aaaatttttactttaaatttct 23512851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 94 - 197
Target Start/End: Original strand, 31732064 - 31732168
Alignment:
Q  94 ggcacttgttaaggattctaaaa-tagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaag 192  Q
    |||||||||||||||||| |||| | |||||||||  ||||||| ||||  ||||||||||||||| || ||||||| | |||||||||||||| |||||    
T  31732064 ggcacttgttaaggattcaaaaaatggaaataattcataactttcatgttgaaaaagttgctttttgatgtttcaatatgttgaatacacaaatcccaag 31732163  T
Q  193 ataaa 197  Q
    |||||    
T  31732164 ataaa 31732168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 188
Target Start/End: Complemental strand, 25985486 - 25985397
Alignment:
Q  99 ttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattc 188  Q
    ||||||||||||  |||||||||||||||| |||||||||| || ||||||||| |||||||| |||| || | ||||||||| ||||||    
T  25985486 ttgttaaggatttaaaaatagaaataattgataacttttatatagaaaaagttgttttttaatgtttcgatatgttgaatacaaaaattc 25985397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 219
Target Start/End: Original strand, 31752704 - 31752804
Alignment:
Q  119 gaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtttctactttaaatttctta 218  Q
    |||||||||| ||| ||||||||  |||||  | ||||||||||||| ||||| |||||||||||| |||||| |||||  || ||||||||||||||||    
T  31752704 gaaataattgataaattttatgttgaaaaatgtactttttaatattttaatgtgttgaatacacaacttccaaaataaaccttttactttaaatttctta 31752803  T
Q  219 t 219  Q
    |    
T  31752804 t 31752804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 113 - 237
Target Start/End: Complemental strand, 53248708 - 53248585
Alignment:
Q  113 aaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtttctactttaaat 212  Q
    |||||||||| ||||| |||||||||||||||||||||| ||||||  | ||| ||| | ||||||| ||||||| ||||| |||||||| | || |||     
T  53248708 aaaatagaaacaattgataacttttatgtataaaaagttactttttggttttttaatatgttgaatatacaaatttcaagacaaagtttccatttaaaac 53248609  T
Q  213 ttcttataggcacttgttaacattt 237  Q
    ||||||  ||||||| |||||||||    
T  53248608 ttctta-gggcacttattaacattt 53248585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 36924647 - 36924530
Alignment:
Q  96 cacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagata 195  Q
    |||||||||||||||| |||| ||||||||||| ||| ||||||||| ||||| |||||||||||| |||||||   ||||| || ||| || ||| |||    
T  36924647 cacttgttaaggattcaaaaa-agaaataattgttaaattttatgtaaaaaaa-ttgctttttaatctttcaataaattgaacacgcaattttcaaaata 36924550  T
Q  196 aagtttctactttaaatttc 215  Q
    ||||| ||||||||| ||||    
T  36924549 aagttgctactttaagtttc 36924530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 218
Target Start/End: Original strand, 29577260 - 29577386
Alignment:
Q  92 agggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaa 191  Q
    |||||| | ||||||||||  ||||  |||| ||||||||| ||||||||| ||||| || |||||| |||||||||    |  ||||||||| || |||    
T  29577260 agggcattagttaaggatttaaaaaaggaaacaattgctaaattttatgtagaaaaaattactttttgatatttcaagaagtcaaatacacaattttcaa 29577359  T
Q  192 gataaagtttctactttaaatttctta 218  Q
    ||||||||||||||||| |||||||||    
T  29577360 gataaagtttctacttttaatttctta 29577386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 218
Target Start/End: Complemental strand, 50173477 - 50173355
Alignment:
Q  96 cacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagata 195  Q
    |||| ||||||||||| ||||  |||| ||||||||| ||||||||  ||| |||||||||||  |||||||||   |  ||||||||| ||||||||||    
T  50173477 cactagttaaggattcaaaaaaggaaacaattgctaaattttatgttgaaagagttgctttttggtatttcaataagtcaaatacacaatttccaagata 50173378  T
Q  196 aagtttctactttaaatttctta 218  Q
    ||| ||||||||| | |||||||    
T  50173377 aagattctacttttagtttctta 50173355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 94 - 187
Target Start/End: Complemental strand, 19791103 - 19791010
Alignment:
Q  94 ggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaatt 187  Q
    |||||||||||| ||||| |||||   || ||||  |||||||||||||||||| |||||||||||||| |||||||| |||| | ||||||||    
T  19791103 ggcacttgttaaagattcaaaaatgacaacaattattaacttttatgtataaaaggttgctttttaataattcaatgtgttgattgcacaaatt 19791010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 218
Target Start/End: Original strand, 52685071 - 52685206
Alignment:
Q  83 ttgttaacaagggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacac 182  Q
    ||||||| ||| ||| ||||||||||| | |||||||||||||||||||| |||||  || ||||| || |||||||   |||| |||  |||||| |||    
T  52685071 ttgttaataagtgcatttgttaaggatacaaaaatagaaataattgctaaattttaaatagaaaaatttactttttatcgtttctatgcattgaatgcac 52685170  T
Q  183 aaattccaagataaagtttctactttaaatttctta 218  Q
    || ||| ||||| || ||||| ||||||| ||||||    
T  52685171 aatttctaagatgaaatttcttctttaaacttctta 52685206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 91 - 219
Target Start/End: Complemental strand, 15985366 - 15985238
Alignment:
Q  91 aagggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattcca 190  Q
    |||| |||| ||||| ||||| ||||  |||||||||| ||| ||||||||  ||||| || ||||||||||||||||||| |||||| | ||| ||||     
T  15985366 aaggacactggttaaagattcaaaaaaggaaataattgataaattttatgttaaaaaaattactttttaatatttcaatgtgttgaatgctcaacttccc 15985267  T
Q  191 agataaagtttctactttaaatttcttat 219  Q
    | |||||  ||  |||||||| |||||||    
T  15985266 atataaacctttcactttaaacttcttat 15985238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 91 - 203
Target Start/End: Complemental strand, 31375624 - 31375512
Alignment:
Q  91 aagggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattcca 190  Q
    |||||||||||||||||||||  ||   ||||| |||  ||| | ||||||| |||| ||| ||||||||  ||||||||| |||||||||||| |||||    
T  31375624 aagggcacttgttaaggattcagaagaggaaattatttgtaaatcttatgtagaaaatgttcctttttaaagtttcaatgtgttgaatacacaatttcca 31375525  T
Q  191 agataaagtttct 203  Q
    ||| ||| |||||    
T  31375524 agaaaaaatttct 31375512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 178
Target Start/End: Original strand, 36473107 - 36473193
Alignment:
Q  92 agggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaat 178  Q
    |||||| | |||||| |||  |||||||||||||||  ||| ||||||||| |||| ||| ||||||||| ||||||||| ||||||    
T  36473107 agggcaatggttaagaatttaaaaatagaaataatttataaattttatgtagaaaatgttactttttaatctttcaatgtcttgaat 36473193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 218
Target Start/End: Original strand, 14030273 - 14030390
Alignment:
Q  101 gttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtt 200  Q
    |||||||||||||||||| ||||||||| ||| ||||| ||| ||||  || |||||| |  |||||| ||||||||| ||  ||| |||||| |||  |    
T  14030273 gttaaggattctaaaataaaaataattgttaagttttaagtaaaaaatattacttttttaagtttcaaagttttgaatgcatcaatcccaagacaaaact 14030372  T
Q  201 tctactttaaatttctta 218  Q
    ||| |||||| |||||||    
T  14030373 tcttctttaagtttctta 14030390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 219
Target Start/End: Complemental strand, 54457559 - 54457470
Alignment:
Q  130 taacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtttctactttaaatttcttat 219  Q
    |||||||  |||| ||| ||||||||||| |||||||||||| ||||||||| |||||  |||||||| ||| || |||||  |||||||    
T  54457559 taactttgttgtagaaagagttgctttttgatatttcaatgtgttgaatacataaattttaagataaattttttattttaatcttcttat 54457470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 151
Target Start/End: Complemental strand, 24487858 - 24487798
Alignment:
Q  92 agggcacttgttaaggattctaaaa-tagaaataattgctaacttttatgtataaaaagtt 151  Q
    |||||||||||||| ||||| |||| |||||| ||||| ||||||||||||| ||||||||    
T  24487858 agggcacttgttaatgattcaaaaaatagaaacaattgataacttttatgtagaaaaagtt 24487798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 26554236 - 26554288
Alignment:
Q  138 atgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattcca 190  Q
    ||||| ||||||||| ||||| || ||||||||| ||||||||||||||||||    
T  26554236 atgtagaaaaagttgttttttgatgtttcaatgtattgaatacacaaattcca 26554288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 187
Target Start/End: Complemental strand, 44765223 - 44765131
Alignment:
Q  96 cacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttg-ctttttaatatttcaatgttttgaatacacaaatt 187  Q
    |||||||||||||||  |||||| ||||||||  ||||||||||||| ||||| |||  ||| | || ||| ||||| |||||||||||||||    
T  44765223 cacttgttaaggatttaaaaataaaaataattaataacttttatgtagaaaaaattgtgtttcttatgtttgaatgtgttgaatacacaaatt 44765131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 92 - 179
Target Start/End: Original strand, 31830178 - 31830265
Alignment:
Q  92 agggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaata 179  Q
    ||||| || ||||||||||| || ||||||||||||   || ||||||||| | |||||| ||||||||  ||||||||| |||||||    
T  31830178 agggctctagttaaggattcaaatatagaaataatttacaagttttatgtagacaaagttactttttaaactttcaatgtgttgaata 31830265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 148
Target Start/End: Original strand, 3169155 - 3169217
Alignment:
Q  86 ttaacaagggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaa 148  Q
    ||||||| |||||||||||||||||| | |||||||| ||||| ||| |||||| || |||||    
T  3169155 ttaacaaaggcacttgttaaggattcaagaatagaaacaattgataaattttatataaaaaaa 3169217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 179
Target Start/End: Original strand, 16041411 - 16041492
Alignment:
Q  97 acttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaata 179  Q
    ||||||||| ||||  |||||| ||| ||| | ||||||||||||| || |||||| ||||| |||||||||||| |||||||    
T  16041411 acttgttaatgattgaaaaataaaaacaatcgataacttttatgta-aataagttgtttttttatatttcaatgtattgaata 16041492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 202
Target Start/End: Complemental strand, 31845060 - 31844946
Alignment:
Q  88 aacaagggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaatt 187  Q
    |||||| || || ||||||||||| ||||  |||||||||   || ||| |||||| |||| || ||||||||  || |||| | ||||||||||||||     
T  31845060 aacaagtgccctagttaaggattcaaaaaaggaaataatttacaaatttaatgtatgaaaaattactttttaaagttccaatatgttgaatacacaaatc 31844961  T
Q  188 ccaagataaagtttc 202  Q
    |||||||||| ||||    
T  31844960 ccaagataaaatttc 31844946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 49068770 - 49068720
Alignment:
Q  98 cttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaa 148  Q
    |||| |||||||| ||||||||||||||||| ||| ||||||||| |||||    
T  49068770 cttgataaggattttaaaatagaaataattgataagttttatgtagaaaaa 49068720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 218
Target Start/End: Complemental strand, 23070907 - 23070830
Alignment:
Q  141 tataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtttctactttaaatttctta 218  Q
    |||||||||||| ||||||| ||||||||   |||||||||  |||| ||||||||| ||||| ||||| | ||||||    
T  23070907 tataaaaagttgttttttaaaatttcaattcattgaatacatcaattacaagataaaatttcttctttagacttctta 23070830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 33840152 - 33840209
Alignment:
Q  91 aagggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaa 148  Q
    |||| ||||| ||||||||| ||||||||||||||||| ||| |||||| || |||||    
T  33840152 aaggacacttattaaggattttaaaatagaaataattgataagttttatataaaaaaa 33840209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 3074120 - 3074064
Alignment:
Q  92 agggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaa 148  Q
    |||||||| |||||||||| |||| |||||||||||| ||| |||||| || |||||    
T  3074120 agggcactagttaaggattttaaattagaaataattgataaattttatatagaaaaa 3074064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 219
Target Start/End: Original strand, 34600797 - 34600893
Alignment:
Q  124 aattgctaacttttatgtataaaaagtt-gctttttaatatttcaatgttttgaatacacaaattccaagataaagtttctactttaaatttcttat 219  Q
    ||||| ||||||||||||||||||||||   ||||| || || |||||| |||| ||||||||| |||| ||||| | | | ||||||| |||||||    
T  34600797 aattgataacttttatgtataaaaagttatttttttgatgttacaatgtgttgattacacaaatcccaaaataaaatatttgctttaaacttcttat 34600893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 42461317 - 42461409
Alignment:
Q  119 gaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtttctactttaaa 211  Q
    |||| ||||| ||||||||||||| ||||| || |||||  || ||||||||| ||||||| ||||||   |||||||| |||  ||||||||    
T  42461317 gaaacaattgataacttttatgtaaaaaaaattacttttatatgtttcaatgtgttgaatatacaaatcttaagataaatttttcactttaaa 42461409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 92 - 219
Target Start/End: Original strand, 11074491 - 11074618
Alignment:
Q  92 agggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaa 191  Q
    |||||||||||||||||||| ||||| |||| ||| | ||||||  ||| | ||||||||||||||| || ||||||||| |||||||||||||| ||||    
T  11074491 agggcacttgttaaggattcaaaaatggaaacaatagataacttccatgcagaaaaagttgcttttttatgtttcaatgtgttgaatacacaaatcccaa 11074590  T
Q  192 gataaagtttctactttaaatttcttat 219  Q
    || ||| ||||||||||||| |||||||    
T  11074591 gaaaaaatttctactttaaacttcttat 11074618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 98 - 219
Target Start/End: Original strand, 3954426 - 3954547
Alignment:
Q  98 cttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaa 197  Q
    |||||||| |||| ||||||||||||||||  ||||||| |||| |||||| || ||||||||||||||||||  |||||| ||||||| | ||||||||    
T  3954426 cttgttaaagattttaaaatagaaataattaataactttcatgtgtaaaaaattactttttaatatttcaatgagttgaattcacaaatcctaagataaa 3954525  T
Q  198 gtttctactttaaatttcttat 219  Q
     |||||| ||||||||| ||||    
T  3954526 atttctattttaaattttttat 3954547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 98 - 197
Target Start/End: Complemental strand, 12880201 - 12880102
Alignment:
Q  98 cttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaa 197  Q
    |||||||||||||| ||||| |||||||||| ||| ||||||||| ||||| || |||||||| |||||||||| ||||||||||   ||||||||||||    
T  12880201 cttgttaaggattcaaaaatggaaataattgataagttttatgtagaaaaaattactttttaaaatttcaatgtgttgaatacaccgtttccaagataaa 12880102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 92 - 219
Target Start/End: Original strand, 37426510 - 37426637
Alignment:
Q  92 agggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaa 191  Q
    ||||||||||||||  |||  |||||||||| |||   ||||||| ||||| ||||| ||||||||| |||||||||||| |||||||||||||| ||||    
T  37426510 agggcacttgttaaaaatttgaaaatagaaacaatccataactttcatgtagaaaaaattgctttttgatatttcaatgtgttgaatacacaaatcccaa 37426609  T
Q  192 gataaagtttctactttaaatttcttat 219  Q
      |||| |||||| |||||| |||||||    
T  37426610 agtaaaatttctattttaaacttcttat 37426637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 211
Target Start/End: Original strand, 16011796 - 16011905
Alignment:
Q  102 ttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagttt 201  Q
    |||||||||| |||||| ||||||||| ||||||||||||| ||||| ||  ||||| || ||| ||||| || |||||| |||||||||||||||  ||    
T  16011796 ttaaggattcaaaaatataaataattgataacttttatgtaaaaaaaattattttttgattttttaatgtgtttaatacataaattccaagataaaactt 16011895  T
Q  202 ctactttaaa 211  Q
    ||||||||||    
T  16011896 ctactttaaa 16011905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 203
Target Start/End: Original strand, 39575463 - 39575574
Alignment:
Q  92 agggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaa 191  Q
    ||||||||| |||||||||| |||   |||||||||  ||| |||||||||||||||||| |||||| |  ||||||||| || ||||||||| ||||||    
T  39575463 agggcacttattaaggattcaaaagaggaaataatttataaattttatgtataaaaagtttctttttgaagtttcaatgtgttaaatacacaatttccaa 39575562  T
Q  192 gataaagtttct 203  Q
    || |||||||||    
T  39575563 gaaaaagtttct 39575574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 92 - 218
Target Start/End: Original strand, 752140 - 752266
Alignment:
Q  92 agggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaa 191  Q
    ||||||||||||||| ||||||||||||||||||||| | | ||||||||| ||||| || |||||| |  ||||||||| |||||| ||  ||| ||||    
T  752140 agggcacttgttaagaattctaaaatagaaataattggttagttttatgtagaaaaaattactttttcaagtttcaatgtgttgaatgcatcaatcccaa 752239  T
Q  192 gataaagtttctactttaaatttctta 218  Q
    || ||| ||||| ||||| | ||||||    
T  752240 gacaaaatttcttctttagacttctta 752266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 134 - 219
Target Start/End: Complemental strand, 42088550 - 42088465
Alignment:
Q  134 ttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtttctactttaaatttcttat 219  Q
    ||||||||| |||||||||||||||||| |||||||   ||||||| |||| ||||||||||||||| ||| ||||| ||||||||    
T  42088550 ttttatgtagaaaaagttgctttttaatctttcaataggttgaataaacaatttccaagataaagttactattttaagtttcttat 42088465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 99 - 218
Target Start/End: Complemental strand, 1852949 - 1852830
Alignment:
Q  99 ttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaag 198  Q
    ||||||||||||| ||||   ||| ||||| ||| |||||| || ||||| |||||||| ||||||||||| | |||| |||| || |||||||||||||    
T  1852949 ttgttaaggattcaaaaaagaaaacaattgataaattttatataaaaaaaattgcttttcaatatttcaatatattgattacataatttccaagataaag 1852850  T
Q  199 tttctactttaaatttctta 218  Q
    |||||| ||| || ||||||    
T  1852849 tttctattttgaacttctta 1852830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 92 - 219
Target Start/End: Original strand, 40141937 - 40142064
Alignment:
Q  92 agggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaa 191  Q
    ||||||||||||||||||   |||||||||| || |  ||||||| ||||| | |||||||||||||  | ||||||||  ||||||| |||||||  ||    
T  40141937 agggcacttgttaaggataaaaaaatagaaacaaattataactttcatgtagataaagttgctttttggtgtttcaatgagttgaatatacaaattttaa 40142036  T
Q  192 gataaagtttctactttaaatttcttat 219  Q
    |||||| ||| ||||||||| |||||||    
T  40142037 gataaattttttactttaaacttcttat 40142064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 113 - 202
Target Start/End: Complemental strand, 1944841 - 1944752
Alignment:
Q  113 aaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtttc 202  Q
    |||||| ||| ||||| ||||||||||  | ||||| || ||||||||| ||||||||| ||||||||||||||||||||| ||| ||||    
T  1944841 aaaatataaacaattgataacttttatacagaaaaaattactttttaatgtttcaatgtattgaatacacaaattccaagacaaattttc 1944752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 211
Target Start/End: Complemental strand, 35316263 - 35316150
Alignment:
Q  98 cttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaa 197  Q
    |||||||| ||||| |||||| ||| ||||||||| ||||||||| ||| | || ||||| |||||||||||   ||| |||||||| ||| | ||||||    
T  35316263 cttgttaaagattcaaaaataaaaacaattgctaaattttatgtagaaagaatttcttttgaatatttcaataggttggatacacaatttctatgataaa 35316164  T
Q  198 gtttctactttaaa 211  Q
     ||||||| |||||    
T  35316163 atttctaccttaaa 35316150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 211
Target Start/End: Complemental strand, 4826055 - 4825938
Alignment:
Q  94 ggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaaga 193  Q
    |||||||||||| ||||| |||||| |||||||||  ||  |||| ||||||||||||  ||||   | |||||||||||  ||| ||||| || |||||    
T  4826055 ggcacttgttaatgattcaaaaataaaaataattgaaaaaatttaggtataaaaagttatttttcgttgtttcaatgtttgaaatgcacaattttcaaga 4825956  T
Q  194 taaagtttctactttaaa 211  Q
     ||| |||||||||||||    
T  4825955 aaaaatttctactttaaa 4825938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 8741040 - 8741093
Alignment:
Q  167 aatgttttgaatacacaaattccaagataaagtttctactttaaatttcttata 220  Q
    ||||| ||||||||||||||||||||||||| |||||| |||||| || |||||    
T  8741040 aatgtattgaatacacaaattccaagataaaatttctattttaaacttgttata 8741093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 216
Target Start/End: Complemental strand, 40083579 - 40083458
Alignment:
Q  96 cacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaag-ttgctttttaatatttcaatgttttgaatacacaaattccaagat 194  Q
    |||||||||| ||||| ||||||||||||| || ||| |||| |||  |||||  || ||||||  | ||||||||| |||||||||||| ||| |||||    
T  40083579 cacttgttaaagattcaaaaatagaaataactgataaattttttgttgaaaaaaattactttttgttgtttcaatgtattgaatacacaatttctaagat 40083480  T
Q  195 aaagtttctactttaaatttct 216  Q
    |||  || ||||||||| ||||    
T  40083479 aaaacttttactttaaacttct 40083458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 34847336 - 34847392
Alignment:
Q  92 agggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaa 148  Q
    |||||||||||||| ||||||||||||||||||||   ||| ||||||||| |||||    
T  34847336 agggcacttgttaaagattctaaaatagaaataatcaataagttttatgtaaaaaaa 34847392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 187
Target Start/End: Original strand, 36626166 - 36626253
Alignment:
Q  99 ttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaatt 187  Q
    |||||||| |||  |||||| ||||||||| ||| |||||| || ||||| ||| |||||||||||||||||| || |||||| |||||    
T  36626166 ttgttaagaatttaaaaataaaaataattgataatttttatataaaaaaa-ttgttttttaatatttcaatgtgttcaatacataaatt 36626253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 158
Target Start/End: Complemental strand, 38788847 - 38788779
Alignment:
Q  91 aagggcacttgttaaggattc-taaaatagaaataattgctaacttttatgtataaaaagttgcttttt 158  Q
    |||||||||||||||||||||  |||||||||| |||||  |||||| ||||| |||||||| ||||||    
T  38788847 aagggcacttgttaaggattcaaaaaatagaaacaattgacaactttcatgtagaaaaagttacttttt 38788779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 218
Target Start/End: Complemental strand, 2060112 - 2060073
Alignment:
Q  179 acacaaattccaagataaagtttctactttaaatttctta 218  Q
    |||||||||||||| ||||||| |||||||||||||||||    
T  2060112 acacaaattccaagttaaagttactactttaaatttctta 2060073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 187
Target Start/End: Complemental strand, 13505977 - 13505914
Alignment:
Q  124 aattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaatt 187  Q
    ||||| |||||||||||||  |||| ||  |||| ||||||| |||||||||||||||||||||    
T  13505977 aattgataacttttatgtagcaaaatttatttttaaatatttgaatgttttgaatacacaaatt 13505914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 177
Target Start/End: Original strand, 3272361 - 3272439
Alignment:
Q  99 ttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaa 177  Q
    ||||||||||||  ||||| |||||||||| ||| ||||||| | ||||||||  ||||||| ||||| |||| |||||    
T  3272361 ttgttaaggatttaaaaatggaaataattggtaaattttatgaagaaaaagttattttttaaaatttctatgtgttgaa 3272439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 28022272 - 28022208
Alignment:
Q  96 cacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaa 160  Q
    |||||||||||||||  ||||| | |||||||| ||| |||||||| || |||||| ||||||||    
T  28022272 cacttgttaaggatttaaaaatgggaataattggtaaattttatgtttagaaagttactttttaa 28022208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 43651537 - 43651473
Alignment:
Q  120 aaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaa 184  Q
    ||||||||| ||| ||||||||||||||| ||  ||||||| ||||||| ||  |||||||||||    
T  43651537 aaataattgttaaattttatgtataaaaatttattttttaaaatttcaacgtactgaatacacaa 43651473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 197
Target Start/End: Complemental strand, 44949338 - 44949238
Alignment:
Q  97 acttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataa 196  Q
    |||||||||| |||  |||||  ||| ||||| ||| ||||| ||| |||| |||| |||||||| |||||||   |||||||||||| || ||||||||    
T  44949338 acttgttaagaatttaaaaatgaaaacaattgttaaattttacgtagaaaatgttgttttttaatctttcaataagttgaatacacaattttcaagataa 44949239  T
Q  197 a 197  Q
    |    
T  44949238 a 44949238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 113 - 202
Target Start/End: Complemental strand, 19608877 - 19608788
Alignment:
Q  113 aaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtttc 202  Q
    |||||||||||||||| ||| ||||||||| |||||||| ||||||||| ||||||||| ||||||| ||||||||||||||||||||||    
T  19608877 aaaatagaaataattgataatttttatgtagaaaaagttactttttaatgtttcaatgtgttgaatagacaaattccaagataaagtttc 19608788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 41174291 - 41174419
Alignment:
Q  91 aagggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattcca 190  Q
    |||| |||||||||||||||| |||| ||||||||||| ||| ||||||||  | |||||| ||||||||||||||||||| || ||| ||||| |||||    
T  41174291 aaggacacttgttaaggattcaaaaagagaaataattgttaaattttatgttgacaaagttactttttaatatttcaatgtgttaaatgcacaacttcca 41174390  T
Q  191 agataaagtttctactttaaatttcttat 219  Q
    |||||||  ||| |||||||  |||||||    
T  41174391 agataaaacttccactttaagcttcttat 41174419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 96 - 204
Target Start/End: Complemental strand, 42035858 - 42035749
Alignment:
Q  96 cacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaata-tttcaatgttttgaatacacaaattccaagat 194  Q
    |||||||||||||| | |||||||| | ||||| ||| ||||||||| | ||||||||||||||||| ||||||||| || ||||||||| || ||||||    
T  42035858 cacttgttaaggatccaaaaatagacacaattgataatttttatgtaaataaagttgctttttaatattttcaatgtgttaaatacacaattttcaagat 42035759  T
Q  195 aaagtttcta 204  Q
    ||| ||||||    
T  42035758 aaaatttcta 42035749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 208
Target Start/End: Original strand, 41807223 - 41807331
Alignment:
Q  99 ttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaag 198  Q
    ||||||||||||  |||||||||| |||| |||| ||||||||| |||||||| | |||||||||||||||   |||||||||||| || ||| |||||     
T  41807223 ttgttaaggatttaaaaatagaaacaattactaaattttatgtagaaaaagttac-ttttaatatttcaataggttgaatacacaatttacaaaataaaa 41807321  T
Q  199 tttctacttt 208  Q
    ||||||||||    
T  41807322 tttctacttt 41807331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 844735 - 844863
Alignment:
Q  91 aagggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattcca 190  Q
    ||||||||||||||||||||  ||||| |||| ||||| | | |||||||   |||| ||| ||||||||| ||||||||| |||||||||||| |||||    
T  844735 aagggcacttgttaaggatttaaaaatggaaacaattgatgaattttatgatgaaaatgttactttttaatgtttcaatgtgttgaatacacaacttcca 844834  T
Q  191 agataaagtttctactttaaatttcttat 219  Q
    | ||| | || | |||||||| |||||||    
T  844835 aaatagaattaccactttaaacttcttat 844863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 219
Target Start/End: Original strand, 8611751 - 8611875
Alignment:
Q  96 cacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacaca-aattccaagat 194  Q
    |||| ||||||||||| ||| | |||| ||||| ||| ||| ||||| ||||||||||||||| || ||||||||| ||||| |  || ||| |||||||    
T  8611751 cactcgttaaggattcaaaattggaaacaattgataattttcatgtagaaaaagttgctttttgatgtttcaatgtgttgaaaatccacaatcccaagat 8611850  T
Q  195 aaagtttctactttaaatttcttat 219  Q
    ||| ||||| |||||||||||||||    
T  8611851 aaaatttctgctttaaatttcttat 8611875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 218
Target Start/End: Complemental strand, 1863226 - 1863100
Alignment:
Q  92 agggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaa 191  Q
    |||||||| ||||||||||| || ||||||||||||   || ||||||||| | |||||| ||||||||  ||||||||| |||||||||  | ||||||    
T  1863226 agggcactagttaaggattcaaatatagaaataatttacaagttttatgtagataaagttactttttaaactttcaatgtgttgaatacatcatttccaa 1863127  T
Q  192 gataaagtttctactttaaatttctta 218  Q
    |||||| ||| |  |||||| ||||||    
T  1863126 gataaaatttattttttaaacttctta 1863100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 202
Target Start/End: Complemental strand, 9765062 - 9764950
Alignment:
Q  91 aagggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgcttttta-atatttcaatgttttgaatacacaaattcc 189  Q
    ||||||||||||||||||||| |||   |||||||||| ||| ||||||||| ||||| ||| |||||| | ||||||| |  |||||||||||| ||||    
T  9765062 aagggcacttgttaaggattcaaaagaggaaataattgttaagttttatgtagaaaaaattgttttttacaaatttcaaagcgttgaatacacaatttcc 9764963  T
Q  190 aagataaagtttc 202  Q
    ||| |||| ||||    
T  9764962 aagttaaaatttc 9764950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 34903371 - 34903452
Alignment:
Q  138 atgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtttctactttaaatttcttat 219  Q
    ||||| ||||| |||||||||| |||||||||   |||||| ||||| || |||||||||||| ||||||||| ||||||||    
T  34903371 atgtagaaaaaattgctttttactatttcaataagttgaatgcacaattttcaagataaagttactactttaagtttcttat 34903452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 184
Target Start/End: Complemental strand, 38328758 - 38328661
Alignment:
Q  87 taacaagggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaa 184  Q
    ||||||| || |||||||||||||| ||||  |||||||||  | | ||||||||  |||||||| ||||||||| ||||||||| || |||||||||    
T  38328758 taacaagtgcccttgttaaggattcaaaaaaggaaataattcatgaattttatgttaaaaaagttactttttaatgtttcaatgtattaaatacacaa 38328661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 119 - 219
Target Start/End: Complemental strand, 2523890 - 2523790
Alignment:
Q  119 gaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtttctactttaaatttctta 218  Q
    ||||||||||  || ||| |||||||||||||||||||||| || ||||||   |||||| || || ||| ||||||||||| || |||||| |||||||    
T  2523890 gaaataattgtgaaatttcatgtataaaaagttgctttttactaattcaataagttgaatgcataatttctaagataaagttactgctttaagtttctta 2523791  T
Q  219 t 219  Q
    |    
T  2523790 t 2523790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 219
Target Start/End: Complemental strand, 6562747 - 6562625
Alignment:
Q  96 cacttgttaa-ggattctaaaatagaaataattgctaacttttatgtataaaaa-gttgctttttaatatttcaatgttttgaatacacaaattccaaga 193  Q
    |||||||||| |||||  |||||||||||||||| ||| ||||||||| || || |||| ||||| || ||||||||| |||||||||||||||  || |    
T  6562747 cacttgttaaaggatttaaaaatagaaataattgataa-ttttatgtaaaacaatgttg-tttttgatgtttcaatgtgttgaatacacaaattttaaaa 6562650  T
Q  194 taaagtttctactttaaatttcttat 219  Q
    |||| ||| |||||| ||||||||||    
T  6562649 taaaatttttacttt-aatttcttat 6562625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 147
Target Start/End: Original strand, 9784383 - 9784435
Alignment:
Q  96 cacttgttaaggattctaaaa-tagaaataattgctaacttttatgtataaaa 147  Q
    ||||||||||| |||| |||| |||||||||||| ||||||||||||||||||    
T  9784383 cacttgttaagaattcaaaaaatagaaataattgataacttttatgtataaaa 9784435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 950641 - 950718
Alignment:
Q  92 agggcacttgttaaggattctaaaataga-aataattgctaacttttatgtataaaaagttgctttttaatatttcaat 169  Q
    |||||||| ||||||||||| |||| ||| || ||||||||  ||||||||| |||||||| ||||||| |||||||||    
T  950641 agggcactagttaaggattc-aaaaaagataacaattgctagattttatgtagaaaaagttactttttagtatttcaat 950718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 178
Target Start/End: Complemental strand, 6539923 - 6539837
Alignment:
Q  92 agggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaat 178  Q
    |||||| | |||||| |||  |||||||||||||||  ||| ||||||||| |||| ||| ||||||||  ||||||||| ||||||    
T  6539923 agggcaatggttaagaatttaaaaatagaaataatttataagttttatgtagaaaatgttactttttaaactttcaatgtcttgaat 6539837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 26449269 - 26449319
Alignment:
Q  134 ttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaa 184  Q
    ||||||||| ||||| || ||||||||  ||||||||||||||||||||||    
T  26449269 ttttatgtagaaaaaatttctttttaaagtttcaatgttttgaatacacaa 26449319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 187
Target Start/End: Original strand, 26912692 - 26912738
Alignment:
Q  141 tataaaaagttgctttttaatatttcaatgttttgaatacacaaatt 187  Q
    |||||||||||||||||||| ||| |||||| || ||||||||||||    
T  26912692 tataaaaagttgctttttaaaattacaatgtattaaatacacaaatt 26912738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 122 - 217
Target Start/End: Original strand, 24824921 - 24825016
Alignment:
Q  122 ataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtttctactttaaatttctt 217  Q
    ||||||||||| |||||||| ||||||||| ||||||||||||||||| |  ||||||||||| ||| |||| ||| ||||||||||||| |||||    
T  24824921 ataattgctaaattttatgtttaaaaagttactttttaatatttcaatatgctgaatacacaatttctaagacaaaatttctactttaaacttctt 24825016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 96 - 219
Target Start/End: Complemental strand, 30326792 - 30326669
Alignment:
Q  96 cacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagata 195  Q
    |||||||||||||||  ||||| | || ||||| ||||||| ||||| ||||||||| | ||| || ||||||||| |||||||||||||| ||||||||    
T  30326792 cacttgttaaggatttaaaaatgggaacaattgataactttcatgtagaaaaagttgttctttgatgtttcaatgtgttgaatacacaaatcccaagata 30326693  T
Q  196 aagtttctactttaaatttcttat 219  Q
    || |||| | |||||| |||||||    
T  30326692 aaatttccattttaaacttcttat 30326669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 94 - 204
Target Start/End: Original strand, 24396763 - 24396873
Alignment:
Q  94 ggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaaga 193  Q
    ||||||||||||| ||   |||||||||| ||||| ||||||| || || | ||||||| |||||||| |||||||||||||||||||| ||||| ||||    
T  24396763 ggcacttgttaagaatatcaaaatagaaacaattgataactttcatataaataaagttgttttttaatgtttcaatgttttgaatacacgaattctaaga 24396862  T
Q  194 taaagtttcta 204  Q
    |||| ||||||    
T  24396863 taaaatttcta 24396873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 211
Target Start/End: Complemental strand, 9050083 - 9049990
Alignment:
Q  118 agaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtttctactttaaa 211  Q
    ||||||||||| ||| |||||||| |||||| || ||||||||||||||||||| |||||||||||| || ||| ||||| |||||| ||||||    
T  9050083 agaaataattgataaattttatgtttaaaaaattactttttaatatttcaatgtgttgaatacacaactttcaaaataaactttctattttaaa 9049990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 113 - 191
Target Start/End: Complemental strand, 343049 - 342971
Alignment:
Q  113 aaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaa 191  Q
    |||||||||| ||||| ||||||||||| ||||||||||  |||||||| ||||||||| ||||||||| |||||||||    
T  343049 aaaatagaaacaattgataacttttatgcataaaaagttattttttaatgtttcaatgtgttgaatacataaattccaa 342971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 113 - 239
Target Start/End: Complemental strand, 2801377 - 2801249
Alignment:
Q  113 aaaatagaaataattgctaacttttatgta-taaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtttctactttaaa 211  Q
    |||||||||| ||||| |||||||||||||  |||||||| ||||||||| ||| ||||| ||||||||| ||||| ||||| |||||||  | ||||||    
T  2801377 aaaatagaaacaattgataacttttatgtagaaaaaagttactttttaatgttttaatgtgttgaatacataaatttcaagacaaagttttcattttaaa 2801278  T
Q  212 ttt--cttataggcacttgttaacattttc 239  Q
     ||  |||| ||||||||||||||||||||    
T  2801277 cttccctta-aggcacttgttaacattttc 2801249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 184
Target Start/End: Original strand, 30456784 - 30456874
Alignment:
Q  94 ggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaa 184  Q
    |||||||||||||||| | ||||| |||||||||| ||| ||||  |||||||||||| |||||||| |||||||| | |||||| |||||    
T  30456784 ggcacttgttaaggatacaaaaatggaaataattgataaatttttagtataaaaagttactttttaaaatttcaatatattgaatgcacaa 30456874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 211
Target Start/End: Original strand, 31597514 - 31597630
Alignment:
Q  96 cacttgttaaggattctaaaa-tagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagat 194  Q
    |||||||||||||||  |||| || ||| ||||  ||||||||||||| |||||||| ||||||||| ||| ||||| |||||| |||||||| |||||     
T  31597514 cacttgttaaggatttaaaaaataaaaacaatttataacttttatgtagaaaaagttactttttaatgttttaatgtgttgaatgcacaaatttcaagac 31597613  T
Q  195 aaagtttctactttaaa 211  Q
    ||| |||| | ||||||    
T  31597614 aaaatttccattttaaa 31597630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 218
Target Start/End: Complemental strand, 2248836 - 2248707
Alignment:
Q  91 aagggcacttgttaaggattctaaaatag-aaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattcc 189  Q
    ||||| ||||||||||||||| |||| || ||| || || ||| ||| ||||  |||||||| ||||||||| ||||||||| |||||||||||||  ||    
T  2248836 aagggaacttgttaaggattcaaaaaaaggaaacaaatgataagtttgatgttgaaaaagttactttttaatgtttcaatgtgttgaatacacaaacacc 2248737  T
Q  190 -aagataaagtttctactttaaatttctta 218  Q
     |||||||| |||| ||||| || ||||||    
T  2248736 gaagataaaatttccactttgaacttctta 2248707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 6067498 - 6067626
Alignment:
Q  91 aagggcacttgttaaggattctaaaatagaaa-taattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattcc 189  Q
    ||||||||||||||| || | ||||| ||||| |||||| ||| ||| ||||| |||||||| |||||||||  ||||||   |||||||||||| |||     
T  6067498 aagggcacttgttaaagact-taaaaaagaaaataattgttaaatttcatgtagaaaaagtttctttttaatcgttcaataagttgaatacacaatttct 6067596  T
Q  190 aagataaagtttctactttaaatttcttat 219  Q
    |||||||||||  |||||||  ||||||||    
T  6067597 aagataaagttgatactttatgtttcttat 6067626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 218
Target Start/End: Complemental strand, 23578889 - 23578763
Alignment:
Q  92 agggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaa 191  Q
    |||||||||||||| ||||  ||||||||||||| |  ||| |||||||| ||||||||| || ||||| |||| ||||  ||||  |||| | || |||    
T  23578889 agggcacttgttaaagatttaaaaatagaaataaataataaattttatgtttaaaaagttactatttaaaattttaatgcattgacaacaccattttcaa 23578790  T
Q  192 gataaagtttctactttaaatttctta 218  Q
     ||||| ||||| ||||||| ||||||    
T  23578789 aataaaatttcttctttaaacttctta 23578763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 211
Target Start/End: Complemental strand, 2817357 - 2817240
Alignment:
Q  96 cacttgttaaggattctaaaa-tagaaataattgctaacttttatgtataaaa-agttgctttttaatatttcaatgttttgaatacacaaattccaaga 193  Q
    |||||||||||||||  |||| |||||| | ||| ||||||||||||| |||| |||| |||||| || ||| || || ||||||| |||||||||| ||    
T  2817357 cacttgttaaggatttaaaaaatagaaacagttgataacttttatgtaaaaaatagttactttttgatgttttaacgtgttgaataaacaaattccagga 2817258  T
Q  194 taaagtttctactttaaa 211  Q
     ||| |||||| ||||||    
T  2817257 aaaaatttctattttaaa 2817240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 28478658 - 28478710
Alignment:
Q  158 taatatttcaatgttttgaatacacaaattccaagataaagtttctactttaa 210  Q
    |||||||| ||| | |||||||||||| ||| |||||||||||||||||||||    
T  28478658 taatattttaatatgttgaatacacaatttctaagataaagtttctactttaa 28478710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 29791113 - 29791165
Alignment:
Q  158 taatatttcaatgttttgaatacacaaattccaagataaagtttctactttaa 210  Q
    |||||||| ||| | |||||||||||| ||| |||||||||||||||||||||    
T  29791113 taatattttaatatgttgaatacacaatttctaagataaagtttctactttaa 29791165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 213
Target Start/End: Complemental strand, 7703115 - 7703001
Alignment:
Q  99 ttgttaaggattctaaaatagaaataattgctaacttttatgtata-aaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaa 197  Q
    ||||||| ||||| |||||| ||||||||| ||| ||||||||||| ||||||| ||||||| | ||| |||  ||||||| ||||| ||  |||||| |    
T  7703115 ttgttaaagattcaaaaataaaaataattgataaattttatgtataaaaaagttactttttattgtttaaat-atttgaatgcacaatttttaagatata 7703017  T
Q  198 gtttctactttaaatt 213  Q
     |||| ||||||||||    
T  7703016 atttccactttaaatt 7703001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 28738537 - 28738471
Alignment:
Q  144 aaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtttctactttaa 210  Q
    |||||||||  ||||||||||| ||||| |||||||||||| ||  || ||||| ||||||||||||    
T  28738537 aaaaagttgtgttttaatatttgaatgtgttgaatacacaatttttaaaataaaatttctactttaa 28738471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 29283283 - 29283202
Alignment:
Q  95 gcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttga 176  Q
    |||||||||||| |||| | |||||||||| ||| | | ||||||||| |  |||||| |||||||| ||||||||| ||||    
T  29283283 gcacttgttaagaattcaagaatagaaatagttgatcaattttatgtagattaagttgttttttaatgtttcaatgtcttga 29283202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 18742279 - 18742223
Alignment:
Q  95 gcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagtt 151  Q
    ||||||||||| ||||  |||||||||||||||| ||| ||||| ||| ||||||||    
T  18742279 gcacttgttaatgatttaaaaatagaaataattgataaattttacgtagaaaaagtt 18742223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 100 - 208
Target Start/End: Complemental strand, 28024626 - 28024519
Alignment:
Q  100 tgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagt 199  Q
    |||||||||||  ||||| |||| ||||||||| |||||||| | |||||||||||||||||||||||||   |||||||||||| || ||||| |||||    
T  28024626 tgttaaggatttaaaaatggaaacaattgctaaattttatgt-tgaaaagttgctttttaatatttcaatagattgaatacacaattttcaagacaaagt 28024528  T
Q  200 ttctacttt 208  Q
    |||| ||||    
T  28024527 ttctgcttt 28024519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 95 - 220
Target Start/End: Original strand, 11662996 - 11663120
Alignment:
Q  95 gcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagat 194  Q
    |||||||||| | |||| |||||||||| ||||| ||||||| ||||| |||| |||||||||  || ||||||||| || ||||||||  ||  |||||    
T  11662996 gcacttgttaggaattcaaaaatagaaacaattgataactttcatgtagaaaacgttgcttttcgatgtttcaatgtgttaaatacacattttt-aagat 11663094  T
Q  195 aaagtttctactttaaatttcttata 220  Q
    ||| |||| |||||||||||||||||    
T  11663095 aaaatttccactttaaatttcttata 11663120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 95 - 208
Target Start/End: Original strand, 28198004 - 28198117
Alignment:
Q  95 gcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagat 194  Q
    ||||||||||||||||| |||   |||||||||  |||  |||||||| |||||||| |||||| |  ||||||||| |||||||||||| ||||||||     
T  28198004 gcacttgttaaggattcaaaagaggaaataatttataaaatttatgtagaaaaagtttctttttgaagtttcaatgtcttgaatacacaatttccaagaa 28198103  T
Q  195 aaagtttctacttt 208  Q
    ||||||||| ||||    
T  28198104 aaagtttcttcttt 28198117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 91 - 208
Target Start/End: Original strand, 49119556 - 49119673
Alignment:
Q  91 aagggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattcca 190  Q
    ||||||||||||||| || |  ||||  |||| ||||||||| |||| |||| || ||||||||||||||| ||||||| | ||||| ||||||  ||||    
T  49119556 aagggcacttgttaaagaataaaaaaaggaaacaattgctaaattttttgtagaataagttgctttttaatttttcaatatgttgaaaacacaatatcca 49119655  T
Q  191 agataaagtttctacttt 208  Q
    ||| ||||||||||||||    
T  49119656 agacaaagtttctacttt 49119673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 216
Target Start/End: Complemental strand, 29559261 - 29559138
Alignment:
Q  92 agggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaa 191  Q
    |||||||||||||||||||| |||||| ||||||||| ||| ||||||| |||||||| |  |||||  ||||| ||||| |||||| ||||| ||||||    
T  29559261 agggcacttgttaaggattcaaaaatataaataattgataaattttatggataaaaaggt-atttttgttattttaatgtcttgaatgcacaatttccaa 29559163  T
Q  192 gataaagtttctactttaaatttct 216  Q
     ||| | |||| |||||||| ||||    
T  29559162 tatacaatttccactttaaacttct 29559138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 187
Target Start/End: Complemental strand, 47188534 - 47188446
Alignment:
Q  99 ttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaatt 187  Q
    ||||||||||||| |||||||||| ||||  ||||||||||||| |||||||| |||||| |||||| ||||| |||| | ||||||||    
T  47188534 ttgttaaggattcaaaaatagaaacaattaataacttttatgtagaaaaagttactttttgatattttaatgtgttgagttcacaaatt 47188446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 93 - 184
Target Start/End: Complemental strand, 38663758 - 38663667
Alignment:
Q  93 gggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaa 184  Q
    ||||||||||||||||| | |||||||||||||||| ||| |||||  ||||||||||| ||||||||  ||||||||  || |||||||||    
T  38663758 gggcacttgttaaggatacaaaaatagaaataattgataaattttaaatataaaaagttactttttaaagtttcaatgcattaaatacacaa 38663667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 202
Target Start/End: Original strand, 12837895 - 12838001
Alignment:
Q  96 cacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagata 195  Q
    |||||||||||||||| | |||||||| ||||| ||| ||||||||| |  ||||||||||||||| ||||||||| |||| |||| || ||| ||  ||    
T  12837895 cacttgttaaggattcaagaatagaaacaattgataaattttatgtagattaagttgctttttaatgtttcaatgtcttgattacataatttctaatgta 12837994  T
Q  196 aagtttc 202  Q
    |||||||    
T  12837995 aagtttc 12838001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 169
Target Start/End: Complemental strand, 28517863 - 28517785
Alignment:
Q  92 agggcacttgttaaggattctaaaa-tagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaat 169  Q
    |||||||||||||||||||| |||| | |||||||||| ||| ||| ||||| |||||||||||||||||| |||||||    
T  28517863 agggcacttgttaaggattcaaaaaatggaaataattgttaaatttcatgtaaaaaaagttgctttttaatctttcaat 28517785  T

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Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 219
Target Start/End: Complemental strand, 7399912 - 7399828
Alignment:
Q  135 tttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtttctactttaaatttcttat 219  Q
    |||||||  |||||||| ||||||||| ||||||||| ||||||| |||| ||||||||||||  ||| |||||||| |||||||    
T  7399912 tttatgttaaaaaagttactttttaatgtttcaatgtgttgaataaacaacttccaagataaaccttccactttaaacttcttat 7399828  T

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Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 211
Target Start/End: Original strand, 34004753 - 34004873
Alignment:
Q  91 aagggcacttgttaaggattctaaaatagaaat-aattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattcc 189  Q
    |||||||||||||||||||| |||||| ||||  |||||  | |||| ||||| |||||||||  |||  || ||||||||| ||| |||||||||||||    
T  34004753 aagggcacttgttaaggatt-taaaattgaaaacaattgaaatctttcatgtagaaaaagttgtctttggatgtttcaatgtgttgcatacacaaattcc 34004851  T
Q  190 aagataaagtttctactttaaa 211  Q
    |||||||| |||| | ||||||    
T  34004852 aagataaattttccattttaaa 34004873  T

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Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 187
Target Start/End: Complemental strand, 35116975 - 35116886
Alignment:
Q  98 cttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaatt 187  Q
    |||||||||||||| ||||  |||||||||  ||| ||||||||| ||||| || |||||| |  ||||||||| |||||||||||||||    
T  35116975 cttgttaaggattcaaaaaaggaaataatttataaattttatgtagaaaaatttcctttttgaagtttcaatgtattgaatacacaaatt 35116886  T

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Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 216
Target Start/End: Original strand, 35727457 - 35727566
Alignment:
Q  107 gattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaagtttctact 206  Q
    ||||| |||||| |||||||||  || |||||| || ||||| || |||||| | |||||||| | ||||||||| || | ||||||||||||||||  |    
T  35727457 gattcaaaaataaaaataattgaaaaattttatatagaaaaaattacttttttaaatttcaatatgttgaatacataattcccaagataaagtttcttat 35727556  T
Q  207 ttaaatttct 216  Q
    ||||||||||    
T  35727557 ttaaatttct 35727566  T

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Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 220
Target Start/End: Original strand, 6707589 - 6707709
Alignment:
Q  99 ttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaag 198  Q
    |||||||| |||  ||||| |||  ||||| ||||||| ||||| ||||||||  |||||||| ||| ||||| ||||||||| ||||   ||| ||||     
T  6707589 ttgttaagtatttaaaaatggaagcaattgataactttcatgta-aaaaagttattttttaatgttttaatgtgttgaatacataaatattaaggtaaaa 6707687  T
Q  199 tttctactttaaatttcttata 220  Q
    ||||||||||||| ||||||||    
T  6707688 tttctactttaaacttcttata 6707709  T

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Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 26041917 - 26041962
Alignment:
Q  173 ttgaatacacaaattccaagataaagtttctactttaaatttctta 218  Q
    |||||||||||| ||||||||||||||||||||||| || ||||||    
T  26041917 ttgaatacacaatttccaagataaagtttctacttttaacttctta 26041962  T

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Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 171
Target Start/End: Complemental strand, 30424963 - 30424886
Alignment:
Q  94 ggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgt 171  Q
    |||| |||||||||||   ||||| |||| ||||||||||||| ||||| |||||||| |||||| || |||||||||    
T  30424963 ggcatttgttaaggataaaaaaatggaaacaattgctaactttcatgtagaaaaagtttctttttgatgtttcaatgt 30424886  T

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Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 186
Target Start/End: Original strand, 49142848 - 49142936
Alignment:
Q  98 cttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaat 186  Q
    |||||||||||||| |||||| |||   ||| ||| ||||||||| ||||| ||  ||||||||||||||| || ||||||| ||||||    
T  49142848 cttgttaaggattcgaaaataaaaacggttgataatttttatgtaaaaaaaattattttttaatatttcaacgtgttgaataaacaaat 49142936  T

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Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 186
Target Start/End: Complemental strand, 7711993 - 7711906
Alignment:
Q  99 ttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaat 186  Q
    ||||| ||||||  |||||| |||||||||  |||||||||||| | ||| ||| ||||| || ||||||||| || |||||||||||    
T  7711993 ttgttgaggatttaaaaataaaaataattgagaacttttatgtagagaaaattgttttttgatgtttcaatgtcttaaatacacaaat 7711906  T

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Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 35494665 - 35494744
Alignment:
Q  99 ttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaat 178  Q
    ||||||||||||| | |  ||||||||||  ||| |||||| || |||||||| |||||| | |||||||||||||||||    
T  35494665 ttgttaaggattcaatagaagaaataattcataaattttatataaaaaaagtttctttttgaaatttcaatgttttgaat 35494744  T

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Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 36586891 - 36586938
Alignment:
Q  172 tttgaatacacaaattccaagataaagtttctactttaaatttcttat 219  Q
    |||||||||||||||| ||||||||| |||||||||||| ||| ||||    
T  36586891 tttgaatacacaaatttcaagataaaatttctactttaatttttttat 36586938  T

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Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 148
Target Start/End: Complemental strand, 43952551 - 43952496
Alignment:
Q  93 gggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaa 148  Q
    ||||| |||||||||||| |||||||||| |||||| ||| ||||||||| |||||    
T  43952551 gggcaattgttaaggattttaaaatagaagtaattggtaagttttatgtagaaaaa 43952496  T

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Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 91 - 158
Target Start/End: Complemental strand, 44107098 - 44107031
Alignment:
Q  91 aagggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgcttttt 158  Q
    |||| ||||| ||||| ||||||||||| ||||||||| ||| ||||||||| ||||| || ||||||    
T  44107098 aaggacacttattaagaattctaaaatataaataattgataagttttatgtagaaaaaattacttttt 44107031  T

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Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 170
Target Start/End: Original strand, 7728565 - 7728643
Alignment:
Q  92 agggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatg 170  Q
    |||||| ||| ||||||| | |||||| ||||||||| ||| |||||  ||||||||||| | |||||| |||||||||    
T  7728565 agggcatttgataaggatacaaaaataaaaataattgataaattttaattataaaaagttacattttaaaatttcaatg 7728643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 158
Target Start/End: Complemental strand, 8903079 - 8903017
Alignment:
Q  96 cacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgcttttt 158  Q
    |||||||||| ||||| |||||| ||| ||||| |||||||||| || | |||||||||||||    
T  8903079 cacttgttaaagattcaaaaataaaaacaattgataacttttatataaataaagttgcttttt 8903017  T

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Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 24423557 - 24423451
Alignment:
Q  91 aagggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattcca 190  Q
    ||||||| ||||||||||||   |||| |||| ||| | | ||||| ||||| ||||||||| |||||  | ||||||||| ||||||||| ||||  ||    
T  24423557 aagggcatttgttaaggattaataaatggaaacaatcgatgactttcatgtagaaaaagttgttttttggtgtttcaatgtgttgaatacataaatctca 24423458  T
Q  191 agataaa 197  Q
    |||||||    
T  24423457 agataaa 24423451  T

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Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 170
Target Start/End: Complemental strand, 46683141 - 46683063
Alignment:
Q  92 agggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatg 170  Q
    |||||| ||||||| ||| | ||||| |||||||||| ||| ||||| |||||||||||| | ||||||  ||||||||    
T  46683141 agggcatttgttaaagatgcaaaaatggaaataattggtaaattttaagtataaaaagttacattttaaagtttcaatg 46683063  T

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Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 197
Target Start/End: Original strand, 3237311 - 3237384
Alignment:
Q  124 aattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaatacacaaattccaagataaa 197  Q
    ||||| ||||||| ||||| ||||| ||||| ||| || |||||||   ||||||||||||| |||||||||||    
T  3237311 aattgataactttcatgtaaaaaaaattgctctttgatgtttcaataggttgaatacacaaaatccaagataaa 3237384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 178
Target Start/End: Complemental strand, 5000448 - 5000371
Alignment:
Q  102 ttaaggattctaaaatagaaataattgctaacttttatgtataaaaa-gttgctttttaatatttcaatgttttgaat 178  Q
    |||||||||  |||||||||||||||  ||| ||||||||| ||||| ||| ||||||||  ||||||||| ||||||    
T  5000448 ttaaggatttaaaaatagaaataatttataagttttatgtaaaaaaatgttactttttaaactttcaatgtcttgaat 5000371  T

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Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 181
Target Start/End: Complemental strand, 30825015 - 30824926
Alignment:
Q  92 agggcacttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttttaatatttcaatgttttgaataca 181  Q
    |||||||| ||||| ||||| || ||||||||||||   || ||||||| | | |||||| ||||||||  ||||||||| |||||||||    
T  30825015 agggcactagttaaagattcaaatatagaaataatttacaagttttatgcagataaagttactttttaaattttcaatgtgttgaataca 30824926  T

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Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 202
Target Start/End: Complemental strand, 34772020 - 34771914
Alignment:
Q  99 ttgttaaggattctaaaatagaaataattgctaacttttatgtataaaaagttgctttt---taatatttcaatgttttgaatacacaaattccaagata 195  Q
    ||||||||||||| | |||||||| ||||| ||| |||||| || |  ||||| |||||   |||||||||||||| |||| ||||||| || ||| |||    
T  34772020 ttgttaaggattcaagaatagaaacaattgataaattttatatagattaagttactttttaataatatttcaatgtcttgattacacaattttcaatata 34771921  T
Q  196 aagtttc 202  Q
    || ||||    
T  34771920 aaatttc 34771914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 92 - 208
Target Start/End: Original strand, 29676 - 29797
Alignment:
Q  92 agggcacttgttaaggattctaaaatagaaataattgctaacttttatgt---ataaa--aagttgctttttaatatttcaatgttttgaatacacaaat 186  Q
    ||||||||||||||| || | |||||||||| ||||| ||| ||| || |   |||||  |||||  |||| ||| ||||||||| |||||||||| |||    
T  29676 agggcacttgttaagaataccaaaatagaaacaattgataaatttaatttcaaataaataaagttatttttcaatgtttcaatgtgttgaatacacgaat 29775  T
Q  187 tccaagataaagtttctacttt 208  Q
    ||||||||||| ||||||||||    
T  29776 tccaagataaaatttctacttt 29797  T

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