View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11166_high_2 (Length: 771)

Name: NF11166_high_2
Description: NF11166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11166_high_2
NF11166_high_2
[»] chr7 (1 HSPs)
chr7 (11-756)||(49085565-49086314)


Alignment Details
Target: chr7 (Bit Score: 652; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 652; E-Value: 0
Query Start/End: Original strand, 11 - 756
Target Start/End: Original strand, 49085565 - 49086314
Alignment:
Q  11 atgaaagccgaaaaagacaggcagagaaccgcccccgggtgaaagggcagtttgttcgccaagtacagggtgaagttccagtagctgaaaccagaggcta 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  49085565 atgaaagccgaaaaagacaggcagagaaccgcccccgggtgaaagggcagtttgttcgccaagtacagggtgaagttccggtagctgaaaccagaggcta 49085664  T
Q  111 ctgagattgttttgtttcaagttaccttcattattgatttacagtctgacttgaacactaatttgactcaacaatggttaactgtagtgtaggtcgagtg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  49085665 ctgagattgttttgtttcaagttaccttcattattgatttacagtctgacttgaacactaatttgactcaacaatggttaactgtagtgtaggtctagtg 49085764  T
Q  211 agatgaaattgtttttaatagcatttttagtgctttctgtcggcttgtttgttaattatattgactcattgactgtctcctacaaatttaggattgtaat 310  Q
    | || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  49085765 aaatcaaattgtttttaatagcatttttagtgctttctgtcggcttgtttgttaattacattgactcattgactgtctcctacaaatttaggattgtaat 49085864  T
Q  311 tattatgtagtgattgatttgaattttttattgtacctcg----tgtaaatcttacttgttagggctgtggtttaactagtatgcttatgtctaataacg 406  Q
    ||||||||||||||||||||||||||||||||||||||||    | |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  49085865 tattatgtagtgattgatttgaattttttattgtacctcgtttatttaaatcttacttgttagggctgtggtttaactagcatgcttatgtctaataacg 49085964  T
Q  407 atgaggccaagatcctgcttttagctggaagaattgcatttgcaggaatgatttcgtccgttcttacattatttctgtgccnnnnnnngagtagaatata 506  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  49085965 atgaagccaagatcctgcttttagctggaagaattgcatttgcaggaatgatttcgtccgttcttacattatttctgtgcctttttttgagtagaatata 49086064  T
Q  507 agcacgattcataaaatatactctcaaattgtattttatcattcaaaaagattttttaaataacgcttcgaaacattgatgaattctgctactgtaatca 606  Q
    |||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  49086065 agcaagattcataaaatatgctctaaaattgtattttatcattcaaaaagattttttaaataacgcttcgaaacattgatgaattctgcttctgtaacca 49086164  T
Q  607 tttggggattaatatgttgaagactcgcataacattatggcttcgtttgttatagtaatagttgtcccattagcgatccacgtagaatgtttattatgca 706  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  49086165 tttggggattaatatgttgaagactcgcataacattatggcttcgtttgttatagtaatagttgtcccattaacgatccacgtagaatgtttattatgca 49086264  T
Q  707 ctagattatttttgccttattcgtcgtctttcttaatgaaggtgtttgct 756  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  49086265 ctagattatttttgccttattcgtcgtctttcataatgaaggtgtttgct 49086314  T

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