View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11166_high_9 (Length: 389)
Name: NF11166_high_9
Description: NF11166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11166_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 371
Target Start/End: Complemental strand, 4094666 - 4094313
Alignment:
| Q |
18 |
taggagggaactaaatgacaaattgttttagttgtacagcaggagcgatctgaaaaatatctagatgaatgattggatttttcaaacataaacactaatt |
117 |
Q |
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| T |
4094666 |
taggagggaactaaataacaaattgttttagttgtacagcaggagtgatctgaaaaatatctagatgaatgattggatttttcaaacatacacactaatt |
4094567 |
T |
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| Q |
118 |
attatgctgagtatttatcatccatcagtttctctcagtgatgtttcacctaatggttttggaatatttttcttttaccatttcatagtggaaaagaaac |
217 |
Q |
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| T |
4094566 |
attatgctgagtatttaacatccatcagtttctctcagtgatgtttcacctaatggttttggaatatttttcttttaccatttcatagtggaaaagaaac |
4094467 |
T |
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| Q |
218 |
ctcaattaggcataatgctgattaaaagaattagtgtaactaggagaaacaaacaattaaattggttggtacaattagccttatgtaattaattacactt |
317 |
Q |
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| T |
4094466 |
ctcaattaggcataatgctgattaaaagaattagtgtaactaggagaaacaaacaattaaattggttggtacaattagccttatgtaattaattacactt |
4094367 |
T |
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| Q |
318 |
gaaagctttagtatgaaaggttctttaaatgagtataggaacaaggattaattt |
371 |
Q |
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| T |
4094366 |
gaaagctttagtatgaaaggttctttaaatgagtataggaacaaggattaattt |
4094313 |
T |
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