View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11166_low_5 (Length: 532)
Name: NF11166_low_5
Description: NF11166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11166_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 6 - 517
Target Start/End: Original strand, 49085799 - 49086314
Alignment:
| Q |
6 |
ttctgtcggcttgtttgttaattatattgactcattgactgtctcctacaaatttaggattgtaattattatgtagtgattgatttgaattttttattgt |
105 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49085799 |
ttctgtcggcttgtttgttaattacattgactcattgactgtctcctacaaatttaggattgtaattattatgtagtgattgatttgaattttttattgt |
49085898 |
T |
|
| Q |
106 |
acctcgtgta----aatcttacttgttagggctgtggtttaactagtatgcttatgtctaataacgatgaggccaagatcctgcttttagctggaagaat |
201 |
Q |
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||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
49085899 |
acctcgtttatttaaatcttacttgttagggctgtggtttaactagcatgcttatgtctaataacgatgaagccaagatcctgcttttagctggaagaat |
49085998 |
T |
|
| Q |
202 |
tgcatttgcaggaatgatttcgtccgttcttacattatttctgtgccnnnnnnngagtagaatataagcacgattcataaaatatactctcaaattgtat |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||| ||||||||| |
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| T |
49085999 |
tgcatttgcaggaatgatttcgtccgttcttacattatttctgtgcctttttttgagtagaatataagcaagattcataaaatatgctctaaaattgtat |
49086098 |
T |
|
| Q |
302 |
tttatcattcaaaaagattttttaaataacgcttcgaaacattgatgaattctgctactgtaatcatttggggattaatatgttgaagactcgcataaca |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
49086099 |
tttatcattcaaaaagattttttaaataacgcttcgaaacattgatgaattctgcttctgtaaccatttggggattaatatgttgaagactcgcataaca |
49086198 |
T |
|
| Q |
402 |
ttatggcttcgtttgttatagtaatagttgtcccattagcgatccacgtagaatgtttattatgcactagattatttttgccttattcgtcgtctttctt |
501 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
49086199 |
ttatggcttcgtttgttatagtaatagttgtcccattaacgatccacgtagaatgtttattatgcactagattatttttgccttattcgtcgtctttcat |
49086298 |
T |
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| Q |
502 |
aatgaaggtgtttgct |
517 |
Q |
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|||||||||||||||| |
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| T |
49086299 |
aatgaaggtgtttgct |
49086314 |
T |
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