View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11166_low_6 (Length: 491)

Name: NF11166_low_6
Description: NF11166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11166_low_6
NF11166_low_6
[»] chr1 (24 HSPs)
chr1 (1-369)||(38219654-38220022)
chr1 (434-472)||(38220087-38220125)
chr1 (226-286)||(25006078-25006135)
chr1 (220-280)||(27738230-27738287)
chr1 (220-278)||(30371111-30371166)
chr1 (164-203)||(2194486-2194525)
chr1 (167-218)||(4700193-4700244)
chr1 (219-280)||(5592735-5592793)
chr1 (220-277)||(7218127-7218181)
chr1 (169-200)||(34278804-34278835)
chr1 (220-280)||(28467357-28467414)
chr1 (171-205)||(34619519-34619553)
chr1 (259-297)||(37842388-37842426)
chr1 (220-250)||(46499931-46499961)
chr1 (163-205)||(48064180-48064222)
chr1 (220-280)||(49517033-49517090)
chr1 (172-205)||(4920907-4920940)
chr1 (259-292)||(26779963-26779996)
chr1 (220-252)||(3062963-3062995)
chr1 (219-251)||(4548683-4548715)
chr1 (222-292)||(24915089-24915156)
chr1 (165-205)||(27820497-27820536)
chr1 (219-277)||(30257645-30257700)
chr1 (166-217)||(35058900-35058952)
[»] chr6 (9 HSPs)
chr6 (224-280)||(4006681-4006734)
chr6 (220-280)||(2514665-2514722)
chr6 (220-258)||(7713988-7714026)
chr6 (220-257)||(29274299-29274336)
chr6 (220-248)||(5551425-5551453)
chr6 (220-252)||(8349739-8349771)
chr6 (220-252)||(9582673-9582705)
chr6 (224-286)||(24626262-24626321)
chr6 (219-285)||(29296338-29296401)
[»] chr2 (14 HSPs)
chr2 (220-280)||(11513861-11513918)
chr2 (222-280)||(43299452-43299508)
chr2 (220-280)||(10143135-10143192)
chr2 (221-280)||(5043610-5043666)
chr2 (220-257)||(6546941-6546978)
chr2 (236-280)||(13056113-13056158)
chr2 (220-279)||(33942113-33942169)
chr2 (218-292)||(12464511-12464582)
chr2 (219-278)||(32757514-32757576)
chr2 (220-248)||(40758986-40759014)
chr2 (169-205)||(41702342-41702378)
chr2 (218-246)||(41851246-41851274)
chr2 (220-290)||(43141834-43141901)
chr2 (260-292)||(44590034-44590066)
[»] chr7 (17 HSPs)
chr7 (222-292)||(12110325-12110392)
chr7 (220-280)||(1417227-1417284)
chr7 (164-220)||(12110248-12110305)
chr7 (220-257)||(12835007-12835044)
chr7 (220-257)||(23918920-23918957)
chr7 (219-252)||(46825060-46825093)
chr7 (219-247)||(946714-946742)
chr7 (220-282)||(9527138-9527197)
chr7 (220-290)||(17989063-17989130)
chr7 (169-205)||(25595983-25596019)
chr7 (220-286)||(27548226-27548289)
chr7 (220-252)||(30456525-30456557)
chr7 (220-252)||(31338471-31338503)
chr7 (170-217)||(34672893-34672941)
chr7 (220-252)||(39591542-39591574)
chr7 (220-274)||(45813236-45813287)
chr7 (220-252)||(46531496-46531528)
[»] chr3 (12 HSPs)
chr3 (220-282)||(48397609-48397668)
chr3 (220-280)||(1816546-1816603)
chr3 (170-204)||(30574070-30574104)
chr3 (220-292)||(30956664-30956733)
chr3 (220-292)||(30972476-30972545)
chr3 (220-280)||(31337451-31337508)
chr3 (220-292)||(33405205-33405274)
chr3 (169-203)||(43079650-43079684)
chr3 (218-247)||(3182442-3182471)
chr3 (220-257)||(42808942-42808979)
chr3 (170-206)||(19679461-19679497)
chr3 (172-204)||(31762206-31762238)
[»] chr8 (10 HSPs)
chr8 (220-280)||(34770855-34770912)
chr8 (169-206)||(31751712-31751749)
chr8 (222-280)||(6509353-6509408)
chr8 (166-205)||(32976304-32976343)
chr8 (172-217)||(6526369-6526414)
chr8 (219-248)||(39881826-39881855)
chr8 (220-257)||(45071165-45071202)
chr8 (165-205)||(1112735-1112775)
chr8 (220-248)||(14482165-14482193)
chr8 (220-252)||(28784870-28784902)
[»] chr5 (12 HSPs)
chr5 (224-288)||(34205206-34205267)
chr5 (166-203)||(11715018-11715055)
chr5 (224-286)||(18857444-18857503)
chr5 (170-205)||(42573936-42573971)
chr5 (167-205)||(6593175-6593213)
chr5 (220-292)||(9202786-9202855)
chr5 (220-279)||(10272482-10272538)
chr5 (220-257)||(32969187-32969224)
chr5 (172-204)||(5559610-5559642)
chr5 (169-205)||(29845054-29845090)
chr5 (169-205)||(38105020-38105056)
chr5 (220-280)||(40534159-40534219)
[»] chr4 (16 HSPs)
chr4 (222-286)||(2996538-2996599)
chr4 (220-291)||(51630074-51630142)
chr4 (226-280)||(7368105-7368157)
chr4 (169-204)||(19039658-19039693)
chr4 (172-218)||(20936357-20936404)
chr4 (169-200)||(46201276-46201307)
chr4 (166-205)||(54214889-54214928)
chr4 (220-292)||(47119003-47119072)
chr4 (220-280)||(30024663-30024726)
chr4 (222-280)||(13949894-13949949)
chr4 (216-252)||(19429563-19429599)
chr4 (220-252)||(46013375-46013407)
chr4 (220-252)||(46247181-46247213)
chr4 (169-205)||(47399411-47399447)
chr4 (220-290)||(49219102-49219169)
chr4 (260-296)||(52734803-52734839)
[»] scaffold0024 (1 HSPs)
scaffold0024 (222-286)||(27541-27602)


Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 38219654 - 38220022
Alignment:
Q  1 tgatagacctagaaagttttgtgccacattttccacccaaaaaagtttattgttagtcatggcatctttgttctcaacacagttggtgcagagtcagaac 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38219654 tgataaacctagaaagttttgtgccacattttccacccaaaaaagtttattgttagtcatggcatctttgttctcaacacagttggtgcagagtcagaac 38219753  T
Q  101 cttctttctggtttcaatgctgcccaggttactatctaattcttattattcattctcatcttcttagaccctgtttggataaacaccttaatttgcagct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38219754 cttctttctggtttcaatgctgcccaggttactatctaattcttattattcattctcatcttcttagaccctgtttggataaacatcttaatttgcagct 38219853  T
Q  201 tatagttaagcacttatgaaaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctcttgaagaacatatatat 300  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38219854 tatagctaagcacttatgaaaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctcttgaagaacatatatat 38219953  T
Q  301 taagaaaacagcttatgaatatgtcatcactcataagctgtttaatacgtctttaaatgtgggttgatg 369  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38219954 taagaaaacagcttatgaatatgtcatcactcataagctgtttaatacgtctttaaatgtggattgatg 38220022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 434 - 472
Target Start/End: Original strand, 38220087 - 38220125
Alignment:
Q  434 aggggaagtcacatgtagtctgtagcagtaccagggcac 472  Q
    |||||||||||||||||||||||||||||||||||||||    
T  38220087 aggggaagtcacatgtagtctgtagcagtaccagggcac 38220125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 286
Target Start/End: Complemental strand, 25006135 - 25006078
Alignment:
Q  226 taaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctcttg 286  Q
    |||||||||||||||||||||| |||| ||||   |||||||||||||||||||| |||||    
T  25006135 taaaataaagtcaaattgttttcatataagct---ataagttgttttcataagctatcttg 25006078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 280
Target Start/End: Complemental strand, 27738287 - 27738230
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagct 280  Q
    |||||||||||||||||||||||||||| |||| ||   |||||| |||||||||||||||    
T  27738287 aaaagataaaataaagtcaaattgttttcatataag---ctataatttgttttcataagct 27738230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 278
Target Start/End: Original strand, 30371111 - 30371166
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataag 278  Q
    ||||||||||||||| |||||||||||| |||| ||   ||||||||||||||||||||    
T  30371111 aaaagataaaataaactcaaattgttttcatataag---ctataagttgttttcataag 30371166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 2194525 - 2194486
Alignment:
Q  164 ttagaccctgtttggataaacaccttaatttgcagcttat 203  Q
    |||| ||||||||||||||||| |||||||||||||||||    
T  2194525 ttaggccctgtttggataaacagcttaatttgcagcttat 2194486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 4700244 - 4700193
Alignment:
Q  167 gaccctgtttggataaacaccttaatttgcagcttatagttaagcacttatg 218  Q
    |||||||||||||| |||| ||||||||||||||| ||  ||||||||||||    
T  4700244 gaccctgtttggattaacaacttaatttgcagcttttacataagcacttatg 4700193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 280
Target Start/End: Complemental strand, 5592793 - 5592735
Alignment:
Q  219 aaaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagct 280  Q
    ||||||||||||||||||| ||||||| | |||| ||   ||||||||||||||||||||||    
T  5592793 aaaaagataaaataaagtcgaattgttgtcatataag---ctataagttgttttcataagct 5592735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 7218181 - 7218127
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataa 277  Q
    ||||| |||||||||||||||||||||| |||| ||   |||||||||||||||||||    
T  7218181 aaaaggtaaaataaagtcaaattgttttcatataag---ctataagttgttttcataa 7218127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 200
Target Start/End: Complemental strand, 34278835 - 34278804
Alignment:
Q  169 ccctgtttggataaacaccttaatttgcagct 200  Q
    ||||||||||||||||||||||||||||||||    
T  34278835 ccctgtttggataaacaccttaatttgcagct 34278804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 280
Target Start/End: Complemental strand, 28467414 - 28467357
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagct 280  Q
    ||||||||||||||||||||||| |||| |||| ||   ||| ||||||||||||||||||    
T  28467414 aaaagataaaataaagtcaaattattttcatataag---ctacaagttgttttcataagct 28467357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 205
Target Start/End: Complemental strand, 34619553 - 34619519
Alignment:
Q  171 ctgtttggataaacaccttaatttgcagcttatag 205  Q
    ||||||||||||||| |||||||||||||||||||    
T  34619553 ctgtttggataaacagcttaatttgcagcttatag 34619519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 297
Target Start/End: Complemental strand, 37842426 - 37842388
Alignment:
Q  259 ctataagttgttttcataagctctcttgaagaacatata 297  Q
    |||||||||||||||||||||| ||||||||||| ||||    
T  37842426 ctataagttgttttcataagctatcttgaagaacttata 37842388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 250
Target Start/End: Complemental strand, 46499961 - 46499931
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttat 250  Q
    |||||||||||||||||||||||||||||||    
T  46499961 aaaagataaaataaagtcaaattgtttttat 46499931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 48064180 - 48064222
Alignment:
Q  163 cttagaccctgtttggataaacaccttaatttgcagcttatag 205  Q
    ||||| || |||||||||||||| |||||||||||||||||||    
T  48064180 cttaggccatgtttggataaacaacttaatttgcagcttatag 48064222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 280
Target Start/End: Original strand, 49517033 - 49517090
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagct 280  Q
    |||||||||||||||||||||||||||| || | ||   ||||||| ||||||||||||||    
T  49517033 aaaagataaaataaagtcaaattgttttcatttaag---ctataagctgttttcataagct 49517090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 205
Target Start/End: Complemental strand, 4920940 - 4920907
Alignment:
Q  172 tgtttggataaacaccttaatttgcagcttatag 205  Q
    |||||||||||||| |||||||||||||||||||    
T  4920940 tgtttggataaacagcttaatttgcagcttatag 4920907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 292
Target Start/End: Complemental strand, 26779996 - 26779963
Alignment:
Q  259 ctataagttgttttcataagctctcttgaagaac 292  Q
    |||||||||||||||||||||| |||||||||||    
T  26779996 ctataagttgttttcataagctatcttgaagaac 26779963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 3062963 - 3062995
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatat 252  Q
    |||||||||||||| ||||||||||||||||||    
T  3062963 aaaagataaaataatgtcaaattgtttttatat 3062995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 219 - 251
Target Start/End: Original strand, 4548683 - 4548715
Alignment:
Q  219 aaaaagataaaataaagtcaaattgtttttata 251  Q
    |||||||||||||||||||||| ||||||||||    
T  4548683 aaaaagataaaataaagtcaaactgtttttata 4548715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 292
Target Start/End: Complemental strand, 24915156 - 24915089
Alignment:
Q  222 aagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctcttgaagaac 292  Q
    ||||||||||||||| ||||||||||| |||    | ||||||| |||||||||||||| ||||| |||||    
T  24915156 aagataaaataaagttaaattgtttttgtat---atgctataagctgttttcataagctgtcttggagaac 24915089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 27820536 - 27820497
Alignment:
Q  165 tagaccctgtttggataaacaccttaatttgcagcttatag 205  Q
    ||||||||||||||||||||| ||| |||||||||||||||    
T  27820536 tagaccctgtttggataaacaactt-atttgcagcttatag 27820497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 30257645 - 30257700
Alignment:
Q  219 aaaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataa 277  Q
    |||||||||||||||||||||| |||||  |||| |||||   ||||||||||||||||    
T  30257645 aaaaagataaaataaagtcaaactgtttccatataagctt---taagttgttttcataa 30257700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 35058952 - 35058900
Alignment:
Q  166 agaccctgtttggataaacaccttaatttgcagcttatag-ttaagcacttat 217  Q
    |||||||||||||||||||| |||| |||||| |||||||  |||||||||||    
T  35058952 agaccctgtttggataaacagcttattttgcaacttatagcataagcacttat 35058900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 4006681 - 4006734
Alignment:
Q  224 gataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagct 280  Q
    ||||||||||||||||||||||||||||| ||   ||||||||||||||||||||||    
T  4006681 gataaaataaagtcaaattgtttttatataag---ctataagttgttttcataagct 4006734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 280
Target Start/End: Original strand, 2514665 - 2514722
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagct 280  Q
    ||||||||||||||||||||| |  |||||||||||   ||||||||| ||||||||||||    
T  2514665 aaaagataaaataaagtcaaactaattttatatgag---ctataagttattttcataagct 2514722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 258
Target Start/End: Original strand, 7713988 - 7714026
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatatgagctt 258  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  7713988 aaaagataaaataaagtcaaattgttttcatataagctt 7714026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 257
Target Start/End: Complemental strand, 29274336 - 29274299
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatatgagct 257  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  29274336 aaaagataaaataaagtcaaattgttttcatataagct 29274299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 5551425 - 5551453
Alignment:
Q  220 aaaagataaaataaagtcaaattgttttt 248  Q
    |||||||||||||||||||||||||||||    
T  5551425 aaaagataaaataaagtcaaattgttttt 5551453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 8349771 - 8349739
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatat 252  Q
    ||||||||||||||||| |||||||||||||||    
T  8349771 aaaagataaaataaagttaaattgtttttatat 8349739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 9582705 - 9582673
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatat 252  Q
    ||||||||||||||||| |||||||||||||||    
T  9582705 aaaagataaaataaagtgaaattgtttttatat 9582673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 286
Target Start/End: Original strand, 24626262 - 24626321
Alignment:
Q  224 gataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctcttg 286  Q
    ||||||| ||||| ||||||||||| |||    |||||||||||||||||||||||| |||||    
T  24626262 gataaaacaaagttaaattgtttttgtata---ttctataagttgttttcataagctatcttg 24626321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 219 - 285
Target Start/End: Complemental strand, 29296401 - 29296338
Alignment:
Q  219 aaaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctctt 285  Q
    |||||||||||||||||| ||||| ||||| ||| || |   ||||||||||||| |||||||||||    
T  29296401 aaaaagataaaataaagttaaattatttttgtataaggt---ataagttgttttcttaagctctctt 29296338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 220 - 280
Target Start/End: Original strand, 11513861 - 11513918
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagct 280  Q
    |||||||||||||||||||||||||||| |||| ||   ||||||||||||||||||||||    
T  11513861 aaaagataaaataaagtcaaattgttttcatataag---ctataagttgttttcataagct 11513918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 280
Target Start/End: Complemental strand, 43299508 - 43299452
Alignment:
Q  222 aagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagct 280  Q
    ||||||||||||||||||| ||||||| ||| |   |||||||||||||||||||||||    
T  43299508 aagataaaataaagtcaaactgtttttgtataaa--tctataagttgttttcataagct 43299452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 280
Target Start/End: Original strand, 10143135 - 10143192
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagct 280  Q
    |||||||||||| |||||||| ||||||||||| ||   ||||||||| ||||||||||||    
T  10143135 aaaagataaaattaagtcaaactgtttttatataag---ctataagtttttttcataagct 10143192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 280
Target Start/End: Complemental strand, 5043666 - 5043610
Alignment:
Q  221 aaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagct 280  Q
    |||||||||||||||||||| |||||| |||| ||   ||| ||||||||||||||||||    
T  5043666 aaagataaaataaagtcaaactgttttcatataag---ctagaagttgttttcataagct 5043610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 6546941 - 6546978
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatatgagct 257  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  6546941 aaaagataaaataaagtcaaattgtttatatataagct 6546978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 13056113 - 13056158
Alignment:
Q  236 tcaaattgtttttatatgagctt-ctataagttgttttcataagct 280  Q
    |||||||||||| |||| ||||| ||||||||||||||||||||||    
T  13056113 tcaaattgttttcatataagcttgctataagttgttttcataagct 13056158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 279
Target Start/End: Original strand, 33942113 - 33942169
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagc 279  Q
    ||||||||||||||||||||| |||||| || | ||   |||||||||||||||||||||    
T  33942113 aaaagataaaataaagtcaaactgttttcatgtaag---ctataagttgttttcataagc 33942169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 218 - 292
Target Start/End: Complemental strand, 12464582 - 12464511
Alignment:
Q  218 gaaaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctcttgaagaac 292  Q
    ||||||||||||||||||| ||||||||||| |||    | ||||||| | |||||||||||| ||||| |||||    
T  12464582 gaaaaagataaaataaagttaaattgtttttgtat---atgctataagctattttcataagctatcttggagaac 12464511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 219 - 278
Target Start/End: Complemental strand, 32757576 - 32757514
Alignment:
Q  219 aaaaagataaaataaagtcaaattgtttttatatgagct---tctataagttgttttcataag 278  Q
    ||||||||||||| || ||||||| ||||||||| ||||    ||||||||||||||||||||    
T  32757576 aaaaagataaaatcaaatcaaattctttttatataagctataactataagttgttttcataag 32757514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 40758986 - 40759014
Alignment:
Q  220 aaaagataaaataaagtcaaattgttttt 248  Q
    |||||||||||||||||||||||||||||    
T  40758986 aaaagataaaataaagtcaaattgttttt 40759014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 41702378 - 41702342
Alignment:
Q  169 ccctgtttggataaacaccttaatttgcagcttatag 205  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  41702378 ccctgtttggataaacagcttaattttcagcttatag 41702342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 218 - 246
Target Start/End: Complemental strand, 41851274 - 41851246
Alignment:
Q  218 gaaaaagataaaataaagtcaaattgttt 246  Q
    |||||||||||||||||||||||||||||    
T  41851274 gaaaaagataaaataaagtcaaattgttt 41851246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 290
Target Start/End: Original strand, 43141834 - 43141901
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctcttgaaga 290  Q
    |||||||||| ||||||||||||||||  |||| ||   ||||||| |||||||||||||| || ||||||    
T  43141834 aaaagataaagtaaagtcaaattgtttccatataag---ctataagatgttttcataagctatcctgaaga 43141901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 44590034 - 44590066
Alignment:
Q  260 tataagttgttttcataagctctcttgaagaac 292  Q
    ||||||||||||||||||||| |||||||||||    
T  44590034 tataagttgttttcataagctatcttgaagaac 44590066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 292
Target Start/End: Original strand, 12110325 - 12110392
Alignment:
Q  222 aagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctcttgaagaac 292  Q
    ||||||||||||||||||||||||||  ||| ||   ||||||| |||||||||||||| |||||||||||    
T  12110325 aagataaaataaagtcaaattgttttggtataag---ctataagctgttttcataagctatcttgaagaac 12110392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 280
Target Start/End: Original strand, 1417227 - 1417284
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagct 280  Q
    |||||||||||||||||||||||||||| |||| ||   | ||||||||||||||||||||    
T  1417227 aaaagataaaataaagtcaaattgttttcatataag---caataagttgttttcataagct 1417284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 12110248 - 12110305
Alignment:
Q  164 ttagaccctgtttggataaacaccttaatttgcagcttatag-ttaagcacttatgaa 220  Q
    |||| |||||||| |||||||| ||||||||||| |||||||  ||||||||||||||    
T  12110248 ttaggccctgtttcgataaacagcttaatttgcaacttatagcataagcacttatgaa 12110305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 257
Target Start/End: Complemental strand, 12835044 - 12835007
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatatgagct 257  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  12835044 aaaagataaaataaagtcaaattgttttcatattagct 12835007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 23918920 - 23918957
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatatgagct 257  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  23918920 aaaagataaaataaagtcaaattgttttcatataagct 23918957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 252
Target Start/End: Original strand, 46825060 - 46825093
Alignment:
Q  219 aaaaagataaaataaagtcaaattgtttttatat 252  Q
    ||||||||||||||||||||||||||||| ||||    
T  46825060 aaaaagataaaataaagtcaaattgttttcatat 46825093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 219 - 247
Target Start/End: Original strand, 946714 - 946742
Alignment:
Q  219 aaaaagataaaataaagtcaaattgtttt 247  Q
    |||||||||||||||||||||||||||||    
T  946714 aaaaagataaaataaagtcaaattgtttt 946742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 282
Target Start/End: Complemental strand, 9527197 - 9527138
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctct 282  Q
    |||||||| |||||||||||| |||||| |||| |    ||||||||||||||||||||||||    
T  9527197 aaaagatataataaagtcaaactgttttcatataa---actataagttgttttcataagctct 9527138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 290
Target Start/End: Complemental strand, 17989130 - 17989063
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctcttgaaga 290  Q
    |||| |||||||||||||||| |||||| |||| |    |||||| |||||||||||||||||| ||||||    
T  17989130 aaaatataaaataaagtcaaactgttttcatataa---actataatttgttttcataagctctcctgaaga 17989063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 25595983 - 25596019
Alignment:
Q  169 ccctgtttggataaacaccttaatttgcagcttatag 205  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  25595983 ccctgtttggataaacaacttaacttgcagcttatag 25596019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 286
Target Start/End: Original strand, 27548226 - 27548289
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctcttg 286  Q
    |||||||||||||||||| ||||||||| || | ||   ||||||| |||||||||||||| |||||    
T  27548226 aaaagataaaataaagtctaattgttttcatttaag---ctataagctgttttcataagctatcttg 27548289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 30456557 - 30456525
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatat 252  Q
    |||||||||||||||||||||||||||| ||||    
T  30456557 aaaagataaaataaagtcaaattgttttcatat 30456525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 31338471 - 31338503
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatat 252  Q
    ||||||||||||||||||||| |||||||||||    
T  31338471 aaaagataaaataaagtcaaactgtttttatat 31338503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 34672941 - 34672893
Alignment:
Q  170 cctgtttggataaacaccttaatttgcagcttatag-ttaagcacttat 217  Q
    |||||||||||||||| |||||||| ||||||||||  |||||||||||    
T  34672941 cctgtttggataaacagcttaattttcagcttatagcataagcacttat 34672893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 39591574 - 39591542
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatat 252  Q
    |||||||||||||||||||||||||||| ||||    
T  39591574 aaaagataaaataaagtcaaattgttttcatat 39591542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 274
Target Start/End: Complemental strand, 45813287 - 45813236
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttca 274  Q
    |||||||||||||||||||| ||||||| |||| |   |||||||||||||||||    
T  45813287 aaaagataaaataaagtcaacttgttttcatataa---tctataagttgttttca 45813236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 46531496 - 46531528
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatat 252  Q
    ||||||||||||||||||||| |||||||||||    
T  46531496 aaaagataaaataaagtcaaactgtttttatat 46531528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 282
Target Start/End: Original strand, 48397609 - 48397668
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctct 282  Q
    ||||||||||||||||||||||||||||||| | ||   ||||||||||||||||| ||||||    
T  48397609 aaaagataaaataaagtcaaattgtttttatttaag---ctataagttgttttcattagctct 48397668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 280
Target Start/End: Original strand, 1816546 - 1816603
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagct 280  Q
    ||||||||||||||||||||| ||||||| ||| ||    |||||||||||||||||||||    
T  1816546 aaaagataaaataaagtcaaactgtttttgtataag---atataagttgttttcataagct 1816603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 204
Target Start/End: Complemental strand, 30574104 - 30574070
Alignment:
Q  170 cctgtttggataaacaccttaatttgcagcttata 204  Q
    |||||||||||||||||| ||||||||||||||||    
T  30574104 cctgtttggataaacaccataatttgcagcttata 30574070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 30956733 - 30956664
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctcttgaagaac 292  Q
    ||||||||||||||||| ||||||||||| |||  |   |||||||||||||||| ||||| ||||| |||||    
T  30956733 aaaagataaaataaagttaaattgtttttgtatagg---ctataagttgttttcaaaagctatcttggagaac 30956664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 30972545 - 30972476
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctcttgaagaac 292  Q
    ||||||||||||||||| ||||||||||| |||  |   |||||||||||||||| ||||| ||||| |||||    
T  30972545 aaaagataaaataaagttaaattgtttttgtatagg---ctataagttgttttcaaaagctatcttggagaac 30972476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 280
Target Start/End: Complemental strand, 31337508 - 31337451
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagct 280  Q
    ||||||||||||||||||||| ||||||||||| ||    |||||||||| ||||||||||    
T  31337508 aaaagataaaataaagtcaaactgtttttatataag---ttataagttgtattcataagct 31337451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 33405274 - 33405205
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctcttgaagaac 292  Q
    ||||| ||||||||||| || ||||||| |||| ||||   ||||| |||||||||||||| |||||||||||    
T  33405274 aaaaggtaaaataaagttaatttgttttcatataagct---ataagctgttttcataagctatcttgaagaac 33405205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 203
Target Start/End: Original strand, 43079650 - 43079684
Alignment:
Q  169 ccctgtttggataaacaccttaatttgcagcttat 203  Q
    ||||||||||||||||| |||||||||||||||||    
T  43079650 ccctgtttggataaacagcttaatttgcagcttat 43079684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 247
Target Start/End: Complemental strand, 3182471 - 3182442
Alignment:
Q  218 gaaaaagataaaataaagtcaaattgtttt 247  Q
    ||||||||||||||||||||||||||||||    
T  3182471 gaaaaagataaaataaagtcaaattgtttt 3182442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 42808942 - 42808979
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatatgagct 257  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  42808942 aaaagataaaataaagttaaattgtttttatataagct 42808979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 19679497 - 19679461
Alignment:
Q  170 cctgtttggataaacaccttaatttgcagcttatagt 206  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  19679497 cctggttggataaacaacttaatttgcagcttatagt 19679461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 172 - 204
Target Start/End: Original strand, 31762206 - 31762238
Alignment:
Q  172 tgtttggataaacaccttaatttgcagcttata 204  Q
    |||||||||||||| ||||||||||||||||||    
T  31762206 tgtttggataaacaacttaatttgcagcttata 31762238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 280
Target Start/End: Original strand, 34770855 - 34770912
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagct 280  Q
    |||||||||||||||||||||||||||| || | ||   ||||||||||||||||||||||    
T  34770855 aaaagataaaataaagtcaaattgttttcatttaag---ctataagttgttttcataagct 34770912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 31751749 - 31751712
Alignment:
Q  169 ccctgtttggataaacaccttaatttgcagcttatagt 206  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  31751749 ccctgtttggataaacaacttaatttgcagcttatagt 31751712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 280
Target Start/End: Complemental strand, 6509408 - 6509353
Alignment:
Q  222 aagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagct 280  Q
    ||||||||||||||||||||||| ||||||| ||   ||||||| ||||||||||||||    
T  6509408 aagataaaataaagtcaaattgtatttatataag---ctataagctgttttcataagct 6509353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 205
Target Start/End: Original strand, 32976304 - 32976343
Alignment:
Q  166 agaccctgtttggataaacaccttaatttgcagcttatag 205  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  32976304 agaccatgtttggataaacaccttaatatgcagcttatag 32976343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 6526414 - 6526369
Alignment:
Q  172 tgtttggataaacaccttaatttgcagcttatagttaagcacttat 217  Q
    |||||||||||||| ||||||||||||||||||  |||||| ||||    
T  6526414 tgtttggataaacagcttaatttgcagcttatacataagcatttat 6526369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 248
Target Start/End: Complemental strand, 39881855 - 39881826
Alignment:
Q  219 aaaaagataaaataaagtcaaattgttttt 248  Q
    ||||||||||||||||||||||||||||||    
T  39881855 aaaaagataaaataaagtcaaattgttttt 39881826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 45071165 - 45071202
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatatgagct 257  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  45071165 aaaagacaaaataaagtcaaattgtttttatataagct 45071202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 1112735 - 1112775
Alignment:
Q  165 tagaccctgtttggataaacaccttaatttgcagcttatag 205  Q
    |||||||||||| || ||||| |||||||||||||||||||    
T  1112735 tagaccctgtttagaaaaacaacttaatttgcagcttatag 1112775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 14482165 - 14482193
Alignment:
Q  220 aaaagataaaataaagtcaaattgttttt 248  Q
    |||||||||||||||||||||||||||||    
T  14482165 aaaagataaaataaagtcaaattgttttt 14482193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 28784902 - 28784870
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatat 252  Q
    |||||||||||||||||||||||||||| ||||    
T  28784902 aaaagataaaataaagtcaaattgttttgatat 28784870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 34205206 - 34205267
Alignment:
Q  224 gataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctcttgaa 288  Q
    |||||| |||||||||||| ||||||||| ||||   |||||||||||||||||||| |||||||    
T  34205206 gataaagtaaagtcaaattatttttatataagct---ataagttgttttcataagctatcttgaa 34205267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 166 - 203
Target Start/End: Complemental strand, 11715055 - 11715018
Alignment:
Q  166 agaccctgtttggataaacaccttaatttgcagcttat 203  Q
    |||||||||||||||||||| |||||||||||||||||    
T  11715055 agaccctgtttggataaacaacttaatttgcagcttat 11715018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 286
Target Start/End: Complemental strand, 18857503 - 18857444
Alignment:
Q  224 gataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctcttg 286  Q
    ||||||||||||||||||||||||| ||| |   |||||||| |||||||||||||| |||||    
T  18857503 gataaaataaagtcaaattgtttttctataa---tctataagctgttttcataagctgtcttg 18857444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 205
Target Start/End: Complemental strand, 42573971 - 42573936
Alignment:
Q  170 cctgtttggataaacaccttaatttgcagcttatag 205  Q
    |||||||||||||||| |||||||||||||||||||    
T  42573971 cctgtttggataaacagcttaatttgcagcttatag 42573936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 6593175 - 6593213
Alignment:
Q  167 gaccctgtttggataaacaccttaatttgcagcttatag 205  Q
    ||||||||||||||||||| |||||||| ||||||||||    
T  6593175 gaccctgtttggataaacaacttaatttacagcttatag 6593213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 9202855 - 9202786
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctcttgaagaac 292  Q
    ||||||||||||||||| |||||||||| |||| ||   | ||||| |||||||||||| | |||||||||||    
T  9202855 aaaagataaaataaagttaaattgttttcatataag---caataagctgttttcataagttatcttgaagaac 9202786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 279
Target Start/End: Complemental strand, 10272538 - 10272482
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagc 279  Q
    |||||||||||| |||||||||||||||  ||| ||   |||||||||||||||||||||    
T  10272538 aaaagataaaattaagtcaaattgttttcgtataag---ctataagttgttttcataagc 10272482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 257
Target Start/End: Complemental strand, 32969224 - 32969187
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatatgagct 257  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  32969224 aaaagataaaataaagtcaaattatttttatataagct 32969187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 172 - 204
Target Start/End: Original strand, 5559610 - 5559642
Alignment:
Q  172 tgtttggataaacaccttaatttgcagcttata 204  Q
    |||||||||||||| ||||||||||||||||||    
T  5559610 tgtttggataaacaacttaatttgcagcttata 5559642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 29845090 - 29845054
Alignment:
Q  169 ccctgtttggataaacaccttaatttgcagcttatag 205  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  29845090 ccctgtttggataaacaacttaatttgcaacttatag 29845054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 38105056 - 38105020
Alignment:
Q  169 ccctgtttggataaacaccttaatttgcagcttatag 205  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  38105056 ccctgtttggataaacaacttattttgcagcttatag 38105020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 280
Target Start/End: Original strand, 40534159 - 40534219
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagct 280  Q
    ||||||| ||||||| ||| ||| |||| |||| ||||  |||||||||||||||||||||    
T  40534159 aaaagatgaaataaaatcacattattttcatataagctagtataagttgttttcataagct 40534219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 286
Target Start/End: Original strand, 2996538 - 2996599
Alignment:
Q  222 aagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctcttg 286  Q
    ||||||||||| ||||||||||||||||||| ||    ||||||||||||||||||||| |||||    
T  2996538 aagataaaatacagtcaaattgtttttatataag---ttataagttgttttcataagctatcttg 2996599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 220 - 291
Target Start/End: Original strand, 51630074 - 51630142
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctcttgaagaa 291  Q
    ||||||||||||||||| |||||||||| |||| ||   ||||||| | |||||||||||| ||||||||||    
T  51630074 aaaagataaaataaagttaaattgttttgatataag---ctataagctattttcataagctatcttgaagaa 51630142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 280
Target Start/End: Complemental strand, 7368157 - 7368105
Alignment:
Q  226 taaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagct 280  Q
    |||||||||||||||||||||| |||| ||||  |||||||||||| ||||||||    
T  7368157 taaaataaagtcaaattgttttcatataagct--tataagttgtttccataagct 7368105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 204
Target Start/End: Original strand, 19039658 - 19039693
Alignment:
Q  169 ccctgtttggataaacaccttaatttgcagcttata 204  Q
    ||||||||||||||||| ||||||||||||||||||    
T  19039658 ccctgtttggataaacaacttaatttgcagcttata 19039693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 20936404 - 20936357
Alignment:
Q  172 tgtttggataaacaccttaatttgcagcttatagt-taagcacttatg 218  Q
    |||||||||||| | |||||||||||||||||||| ||||||||||||    
T  20936404 tgtttggataaagagcttaatttgcagcttatagtataagcacttatg 20936357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 200
Target Start/End: Original strand, 46201276 - 46201307
Alignment:
Q  169 ccctgtttggataaacaccttaatttgcagct 200  Q
    ||||||||||||||||||||||||||||||||    
T  46201276 ccctgtttggataaacaccttaatttgcagct 46201307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 205
Target Start/End: Original strand, 54214889 - 54214928
Alignment:
Q  166 agaccctgtttggataaacaccttaatttgcagcttatag 205  Q
    |||| ||||||||||||||| |||||||||||||||||||    
T  54214889 agactctgtttggataaacaacttaatttgcagcttatag 54214928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 47119072 - 47119003
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctcttgaagaac 292  Q
    ||||||||||| ||||| |||||||||| |||| ||||   ||||||||| |||||| ||| |||||||||||    
T  47119072 aaaagataaaacaaagttaaattgttttcatataagct---ataagttgtattcatatgctatcttgaagaac 47119003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 280
Target Start/End: Original strand, 30024663 - 30024726
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatatgagct---tctataagttgttttcataagct 280  Q
    ||||||||||||||||| |||||||||| |||| ||||    |||||||||||| |||||||||    
T  30024663 aaaagataaaataaagtaaaattgttttcatataagctataactataagttgttgtcataagct 30024726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 280
Target Start/End: Complemental strand, 13949949 - 13949894
Alignment:
Q  222 aagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagct 280  Q
    |||||||||||||||||||||||||| |||| ||   |||||||||||||  |||||||    
T  13949949 aagataaaataaagtcaaattgttttcatataag---ctataagttgtttgtataagct 13949894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 19429599 - 19429563
Alignment:
Q  216 atgaaaaagataaaataaagtcaaattgtttttatat 252  Q
    |||| |||||||||||||||||||| |||||||||||    
T  19429599 atgacaaagataaaataaagtcaaactgtttttatat 19429563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 46013407 - 46013375
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatat 252  Q
    ||||||||||||||||||||| |||||||||||    
T  46013407 aaaagataaaataaagtcaaactgtttttatat 46013375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 46247181 - 46247213
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatat 252  Q
    ||||||||||||||||||||| |||||||||||    
T  46247181 aaaagataaaataaagtcaaactgtttttatat 46247213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 47399411 - 47399447
Alignment:
Q  169 ccctgtttggataaacaccttaatttgcagcttatag 205  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  47399411 ccctgtttggataaacaacttagtttgcagcttatag 47399447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 290
Target Start/End: Original strand, 49219102 - 49219169
Alignment:
Q  220 aaaagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctcttgaaga 290  Q
    |||| |||||||||||||||||| |||| |||| ||   ||||||||||||||||||| || |||| ||||    
T  49219102 aaaatataaaataaagtcaaattattttcatataag---ctataagttgttttcataaactatcttaaaga 49219169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 296
Target Start/End: Original strand, 52734803 - 52734839
Alignment:
Q  260 tataagttgttttcataagctctcttgaagaacatat 296  Q
    ||||||||||||||||||||| || ||||||||||||    
T  52734803 tataagttgttttcataagctatcatgaagaacatat 52734839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 286
Target Start/End: Original strand, 27541 - 27602
Alignment:
Q  222 aagataaaataaagtcaaattgtttttatatgagcttctataagttgttttcataagctctcttg 286  Q
    |||||||||||||||||||||||||| |||| |    ||||||||||||||||||| || |||||    
T  27541 aagataaaataaagtcaaattgttttcatataa---actataagttgttttcataaactatcttg 27602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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