View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11166_low_8 (Length: 419)
Name: NF11166_low_8
Description: NF11166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11166_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 19 - 412
Target Start/End: Complemental strand, 29607481 - 29607088
Alignment:
| Q |
19 |
ccattgcccttggtaagattgtgcaccattctgtgaaacataaaatcataagattcgataaaagaagctttagcaagttttgccaagtcagagtacaatc |
118 |
Q |
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| T |
29607481 |
ccattgcccttggtaagattgtgcaccattctgtgaaacataaaatcataagattcgataaaagaagctttagcaagttttgccaagtcagagtacaatc |
29607382 |
T |
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| Q |
119 |
tgtctgataaagatcagatgacaaagattgcatgaattcgttaatgcggcataatccagaccaaagaggtccgtaaatatagaattgtaacttaaagtaa |
218 |
Q |
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| T |
29607381 |
tgtctgataaagatcagatgacaaagattgcatgaattcgttaatgcggcatgatccagaccaaagaggtccgtaaatatagaattgtaacttaaagtaa |
29607282 |
T |
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| Q |
219 |
aatggaaaaggatattaccgcactgggactgggtgctggtgacggtccttcatctgaactcattgtagtattatcatcagccagtggtgctgggggactc |
318 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29607281 |
aatggaaaaagatattaccgcactgggactgggtgctggtgacggtccttcatctgaactcattgtagtattatcatcagccagtggtgctgggggactc |
29607182 |
T |
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| Q |
319 |
ctcctaatgattgttgaacttgaacttgtaggctctggtgctagagctagtgcgtgatgtttcttatgcttactatgcttgtgttttcttctct |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29607181 |
ctcctaatgattgttgaacttgaacttgtaggctctggtgctagagctagtgcgtgatgtttcttatgcttactatgcttgtgttttcttctct |
29607088 |
T |
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