View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11167_high_13 (Length: 250)
Name: NF11167_high_13
Description: NF11167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11167_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 12 - 239
Target Start/End: Original strand, 47067977 - 47068211
Alignment:
| Q |
12 |
agggtctctcacaaggctttgtgtcatataagtccacatgtttggtatagggtgccttgtaagagtgaannnnnnnnn-------ggattatcttgctga |
104 |
Q |
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| T |
47067977 |
agggtctctcacaaggctttgtgtcatataagtccacatgtttggtatagggtgccttgtaagagtgaatttttatttttattttggattatcttgctga |
47068076 |
T |
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| Q |
105 |
ctcagaaatggcatgtccgtcacattaaccacnnnnnnnnnnnnnnnnnnaggaaagtcacattaactacttaactttggcttttcaaataaattacttg |
204 |
Q |
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| T |
47068077 |
ctcagaaatggcatgtccgtcacattaaccacttttttttttttttttttaggaaagtcgcattaactacttaactttggcttttcaaataaattacttg |
47068176 |
T |
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| Q |
205 |
actgagtttgttgaaaacttgtgttacttcttcat |
239 |
Q |
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| T |
47068177 |
actgagtttgttgaaaacttgtgttacttcttcat |
47068211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 47068395 - 47068459
Alignment:
| Q |
16 |
tctctcacaaggctttgtgtcatataagtccacatgtttggtatagggtgccttgtaagagtgaa |
80 |
Q |
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| T |
47068395 |
tctctcacagggttttatttcatacaagtccacctgtttggaatagggtgccttataagagtgaa |
47068459 |
T |
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