View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11167_high_6 (Length: 393)
Name: NF11167_high_6
Description: NF11167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11167_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 25740918 - 25741296
Alignment:
| Q |
1 |
tagatactcagcagagtatgcaagtgacagagtgaccttgttgtcacgatccactaagattcatccattgttggttcagttcgtcctttatnnnnnnnnc |
100 |
Q |
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| T |
25740918 |
tagatactcggcagagtatgcaagtgacagagtgaccttgttgtcacgatccactaagattcatccgttgttggttcagttcgtcctttataaaaaaa-c |
25741016 |
T |
|
| Q |
101 |
gcacgaggaaatattgaatatacataattactctttctgattgtttctgcagattggttggagttgccgggtgctttgatacttttgatcgttgtatctc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
25741017 |
gcacgaggaaatattgaatatacataattactctttctgattgtttctgcagattggttggagttgccgggtgctttgatactcttgattgttgtatctc |
25741116 |
T |
|
| Q |
201 |
ctgatctagttgcaagcacctttagaaacgacctagttggaataatcgtgtgccttgtcattgcatgttatttgctacaagagcatattcgtgcatctgg |
300 |
Q |
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| T |
25741117 |
ctgatctagttgcaagcacctttagaaacgacctagttggaataatcgtgtgccttgtcattgcatgttatttgctacaagagcatattcgtgcatctgg |
25741216 |
T |
|
| Q |
301 |
tggtttcagaaactccttcactaaagcaaatggcgtatcaaattccgttggcataattcttctgttagtctaccccgtct |
380 |
Q |
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| T |
25741217 |
tggtttcagaaactccttcactaaagcaaatggcgtatcaaattccgttggcataattcttctattagtctaccccgtct |
25741296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 138 - 376
Target Start/End: Original strand, 25744588 - 25744826
Alignment:
| Q |
138 |
tgattgtttctgcagattggttggagttgccgggtgctttgatacttttgatcgttgtatctcctgatctagttgcaagcacctttagaaacgacctagt |
237 |
Q |
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| T |
25744588 |
tgattgtttctgcagattggttggagttgccgggtgctttgatacttttgattgttgtatctcctgatctagttgcaagcacctttagaaacgaccttgt |
25744687 |
T |
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| Q |
238 |
tggaataatcgtgtgccttgtcattgcatgttatttgctacaagagcatattcgtgcatctggtggtttcagaaactccttcactaaagcaaatggcgta |
337 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
25744688 |
tggagtaattgtgtgccttgtcattgcatgttatttgctacaagagcatattcgtgcatctggtggtttcagaaactccttcactagagcaaatggcgta |
25744787 |
T |
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| Q |
338 |
tcaaattccgttggcataattcttctgttagtctacccc |
376 |
Q |
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| T |
25744788 |
tcaaattccattggcataattcttctgttagtctacccc |
25744826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 25740866 - 25740922
Alignment:
| Q |
4 |
atactcagcagagtatgcaagtgacagagtgaccttgttgtcacgatccactaagat |
60 |
Q |
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|||| |||||||||| | |||| ||| |||||||||||||||||||||||| |||| |
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| T |
25740866 |
atacacagcagagtaagtaagtaacacggtgaccttgttgtcacgatccacttagat |
25740922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 172 - 366
Target Start/End: Original strand, 12514625 - 12514819
Alignment:
| Q |
172 |
tgctttgatacttttgatcgttgtatctcctgatctagttgcaagcacctttagaaacgacctagttggaataatcgtgtgccttgtcattgcatgttat |
271 |
Q |
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||||||||| ||| | || ||||| |||| |||||| |||||| ||||||||||| ||| |||||| | | || ||||||||||||||||||||| |
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| T |
12514625 |
tgctttgattcttcttattgttgttgctcccgatctatttgcaaacacctttagaagcgatgaagttggcttggtagtatgccttgtcattgcatgttat |
12514724 |
T |
|
| Q |
272 |
ttgctacaagagcatattcgtgcatctggtggtttcagaaactccttcactaaagcaaatggcgtatcaaattccgttggcataattcttctgtt |
366 |
Q |
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| T |
12514725 |
ttgctacaagaacaaattcgggcatctggtggttttagagattctttaacaaaagctcatggaatatcaaatacaattggcataattcttctgtt |
12514819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 251 - 376
Target Start/End: Original strand, 12510825 - 12510950
Alignment:
| Q |
251 |
tgccttgtcattgcatgttatttgctacaagagcatattcgtgcatctggtggtttcagaaactccttcactaaagcaaatggcgtatcaaattccgttg |
350 |
Q |
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|||||| ||||||||||||||||||| ||||| |||||||| ||||| ||||| || ||| | || ||||| ||||| ||||| | |||||| | ||| |
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| T |
12510825 |
tgccttatcattgcatgttatttgctgcaagaacatattcgggcatccggtggctttagagattcattcacaaaagcttatggcatgtcaaatacaattg |
12510924 |
T |
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| Q |
351 |
gcataattcttctgttagtctacccc |
376 |
Q |
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|||||||||||||| || |||||||| |
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| T |
12510925 |
gcataattcttctgctaatctacccc |
12510950 |
T |
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