View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11167_high_8 (Length: 357)
Name: NF11167_high_8
Description: NF11167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11167_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 6139938 - 6139613
Alignment:
| Q |
18 |
agactataaatcaatgaaagagacatatgtgtgtttaaaatgtgtgtaataatatcagaaaaagtattaaagtgatta-tgtaagaaaatgtatataatt |
116 |
Q |
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| T |
6139938 |
agactataaatcaatgaaagagacatatgtgtgtttaaaatatgtgtaataatatcagaaaaagtattaaagtgattaatgtaagaaaatgtatataatt |
6139839 |
T |
|
| Q |
117 |
tgagtgaaaatttaattacctctgtacgcgcagagccactgttgcgaagatgatgtatggtgttaaaaatctgatacatttcatacccaaatgttaaatt |
216 |
Q |
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| T |
6139838 |
tgagtgaaaatttaattacctctatacgcgcagagccaccgttgcgaagatgatgtatggtgttaaaaatctgatacatttcagacccaaatgttaaatt |
6139739 |
T |
|
| Q |
217 |
cgtatttgactcatgaatgcaaaattaatcaacagaagatatagaaatctaacaatttaattatatgaatacaactaacgcatatgttattcttcatttt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6139738 |
cgtatttgactcatgaatgcaaaattaatcaacagaagatatagaaatctaacaacttaattatatgaatacaactaacgcatatgttattcttcatttt |
6139639 |
T |
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| Q |
317 |
tcattcgtcaatgtaatattaaattt |
342 |
Q |
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|||||||||||||||||||||||||| |
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| T |
6139638 |
tcattcgtcaatgtaatattaaattt |
6139613 |
T |
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