View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11167_low_1 (Length: 603)

Name: NF11167_low_1
Description: NF11167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11167_low_1
NF11167_low_1
[»] chr6 (3 HSPs)
chr6 (2-589)||(8699003-8699599)
chr6 (489-575)||(21775553-21775639)
chr6 (489-569)||(19836730-19836810)
[»] chr3 (3 HSPs)
chr3 (2-255)||(20598057-20598310)
chr3 (530-589)||(20598004-20598063)
chr3 (497-569)||(3813360-3813432)
[»] chr4 (1 HSPs)
chr4 (489-575)||(20624014-20624100)
[»] chr2 (1 HSPs)
chr2 (493-579)||(25561039-25561125)
[»] chr5 (2 HSPs)
chr5 (489-563)||(23332409-23332483)
chr5 (493-578)||(34895919-34896004)
[»] chr8 (1 HSPs)
chr8 (490-569)||(23704822-23704901)
[»] chr7 (1 HSPs)
chr7 (493-578)||(35662490-35662575)


Alignment Details
Target: chr6 (Bit Score: 416; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 2 - 589
Target Start/End: Complemental strand, 8699599 - 8699003
Alignment:
Q  2 cttggtcattagcatcaaaatattactccagcacctaaattgtcacataacattacatgaaaatatatgcacatagacattacatcaaaataggggcact 101  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  8699599 cttggtcattagcatcaaaatattaatccagcacctaaattgtcacatagcattacatgaaaatatatgcacataggcattacatcaaaaaaggggcact 8699500  T
Q  102 tagaaataacttcaaaacatattggccctagcagaatcttatgaacttctaatgttgacttgaagttgaacccttaaccctagcagacactttcttcttc 201  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8699499 tagaaataactgcaaaacatattggccctagcagaatcttatgaacttctaatgttgacttgaagttgaacccttaaccctagcaaacactttcttcttc 8699400  T
Q  202 ttgatgtttggttgtgttgatgaaaccttctccttgcccttc---cttttgctggttttgttctgttgatttgaggtccttgcagatgttgcaccatttg 298  Q
    || |||||||||||||||||||||||||| ||||||||||||   ||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  8699399 ttcatgtttggttgtgttgatgaaaccttatccttgcccttccttctttttctggttttgttatgttgatttgaggtccttgcagatgttgcaccagttg 8699300  T
Q  299 ggttctgttgctgaggtccttgcagatgctgcactgtcctaccttgccttcttgatgttacagttgttggtggtggaggttgattttgaagtggtggtgg 398  Q
    ||||||||||||||||||||||||||||||||| |||  | |||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8699299 ggttctgttgctgaggtccttgcagatgctgcattgtattgccttgcgttgttgatgttacagctgttggtggtggaggttgattttgaagtggtggtgg 8699200  T
Q  399 agg------ttgcactgtcctaccttgcacatcaggttgattttgcactgatgtgccttgagcagaagttggattttggcttgatgagggctgacttggt 492  Q
     ||      ||||||||   | |||||  ||  || | ||||||| |||||||| | |||| |||||||||||||||||||||||||||| |||||||||    
T  8699199 tggttgattttgcactgatgtgccttgagcagaagttggattttggactgatgtcctttgaccagaagttggattttggcttgatgagggttgacttggt 8699100  T
Q  493 ggtggtggaagcttgcaggtggacttgttatgtccactctgcttgcacctactgcattttataccccatcttgcccttttcatctgactgatgtcca 589  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  8699099 ggtggtggaagcttgcaggtggacttgttatgtccactctgcttgcacctactgcattttataccccatcttgcccttttcatctgagtgttgtcca 8699003  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 489 - 575
Target Start/End: Original strand, 21775553 - 21775639
Alignment:
Q  489 tggtggtggtggaagcttgcaggtggacttgttatgtccactctgcttgcacctactgcattttataccccatcttgcccttttcat 575  Q
    |||| |||||||||||||||| |||||||||||||||||||| || ||||| || |||||||| ||||||||||| ||||| |||||    
T  21775553 tggtagtggtggaagcttgcaagtggacttgttatgtccactttgtttgcatctgctgcatttcataccccatctagccctcttcat 21775639  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 489 - 569
Target Start/End: Complemental strand, 19836810 - 19836730
Alignment:
Q  489 tggtggtggtggaagcttgcaggtggacttgttatgtccactctgcttgcacctactgcattttataccccatcttgccct 569  Q
    |||||||||||||||||| || |||||||| ||||||||| | | |||||| || ||||| || || |||||||| |||||    
T  19836810 tggtggtggtggaagcttacaagtggacttattatgtccattttccttgcatctgctgcacttaattccccatctagccct 19836730  T

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Target: chr3 (Bit Score: 230; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 2 - 255
Target Start/End: Complemental strand, 20598310 - 20598057
Alignment:
Q  2 cttggtcattagcatcaaaatattactccagcacctaaattgtcacataacattacatgaaaatatatgcacatagacattacatcaaaataggggcact 101  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  20598310 cttggtcattagcatcaaaatattaatccagcacctaaattgtcacatagcattacatgaaaatatatgcacataggcattacatcaaaataggggcact 20598211  T
Q  102 tagaaataacttcaaaacatattggccctagcagaatcttatgaacttctaatgttgacttgaagttgaacccttaaccctagcagacactttcttcttc 201  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20598210 tagaaataactgcaaaacatattggccctagcagaatcttatgaacttctaatgttgacttgaagttgaacccttaaccctagcagacactttcttcttc 20598111  T
Q  202 ttgatgtttggttgtgttgatgaaaccttctccttgcccttccttttgctggtt 255  Q
    || |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  20598110 ttcatgtttggttgtgttgatgaaaccttctccttgcccttcctttttctggtt 20598057  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 530 - 589
Target Start/End: Complemental strand, 20598063 - 20598004
Alignment:
Q  530 tctgcttgcacctactgcattttataccccatcttgcccttttcatctgactgatgtcca 589  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  20598063 tctggttgcacctactgcattttataccccatcttgcccttttcatctgagtgttgtcca 20598004  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 497 - 569
Target Start/End: Original strand, 3813360 - 3813432
Alignment:
Q  497 gtggaagcttgcaggtggacttgttatgtccactctgcttgcacctactgcattttataccccatcttgccct 569  Q
    |||| |||||||| |||||||| |||||||||||||||||||| || || ||||| || |||||||| |||||    
T  3813360 gtgggagcttgcaagtggacttattatgtccactctgcttgcatctgctacatttgattccccatctagccct 3813432  T

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Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 489 - 575
Target Start/End: Complemental strand, 20624100 - 20624014
Alignment:
Q  489 tggtggtggtggaagcttgcaggtggacttgttatgtccactctgcttgcacctactgcattttataccccatcttgcccttttcat 575  Q
    |||| |||||||||||||||| |||||||||||||||||||| || ||||| || |||||||| ||||||||||| ||||| |||||    
T  20624100 tggtagtggtggaagcttgcaagtggacttgttatgtccactttgtttgcatctgctgcatttcataccccatctagccctcttcat 20624014  T

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Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 493 - 579
Target Start/End: Original strand, 25561039 - 25561125
Alignment:
Q  493 ggtggtggaagcttgcaggtggacttgttatgtccactctgcttgcacctactgcattttataccccatcttgcccttttcatctga 579  Q
    |||||||||||||||||||||||||||||||||||||| || || || |||||||| |||||||||||  | ||||| |||||||||    
T  25561039 ggtggtggaagcttgcaggtggacttgttatgtccactatgtttacatctactgcactttataccccacttagccctcttcatctga 25561125  T

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Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 489 - 563
Target Start/End: Complemental strand, 23332483 - 23332409
Alignment:
Q  489 tggtggtggtggaagcttgcaggtggacttgttatgtccactctgcttgcacctactgcattttataccccatct 563  Q
    |||| |||||||||||||||| |||||||||||||||||||| || ||||| || |||||||| |||||||||||    
T  23332483 tggtagtggtggaagcttgcaagtggacttgttatgtccactttgtttgcatctgctgcatttcataccccatct 23332409  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 578
Target Start/End: Original strand, 34895919 - 34896004
Alignment:
Q  493 ggtggtggaagcttgcaggtggacttgttatgtccactctgcttgcacctactgcattttataccccatcttgcccttttcatctg 578  Q
    |||||||| |||||||| |||||||| ||||||||||| ||||| || || || || || || ||||| || |||||| |||||||    
T  34895919 ggtggtggcagcttgcaagtggacttattatgtccactttgcttacatctgctacacttcattccccacctagcccttctcatctg 34896004  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 490 - 569
Target Start/End: Original strand, 23704822 - 23704901
Alignment:
Q  490 ggtggtggtggaagcttgcaggtggacttgttatgtccactctgcttgcacctactgcattttataccccatcttgccct 569  Q
    ||||||||||| || ||||| |||||||| ||||||||||||||||| || || || ||||| ||||||||||| |||||    
T  23704822 ggtggtggtgggagtttgcaagtggacttattatgtccactctgcttacatctgctacatttcataccccatctagccct 23704901  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 578
Target Start/End: Complemental strand, 35662575 - 35662490
Alignment:
Q  493 ggtggtggaagcttgcaggtggacttgttatgtccactctgcttgcacctactgcattttataccccatcttgcccttttcatctg 578  Q
    |||||||| |||||||| |||||||| ||||||||||| ||| |||| || || || || || ||||| || |||||| |||||||    
T  35662575 ggtggtggcagcttgcaagtggacttattatgtccactttgcctgcagctgctacacttcattccccacctagcccttctcatctg 35662490  T

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