View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11167_low_12 (Length: 347)
Name: NF11167_low_12
Description: NF11167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11167_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 343
Target Start/End: Original strand, 25740493 - 25740815
Alignment:
| Q |
17 |
aatttgtaccttcatttttgtctaatattattctacttacttatttacatgactacgcagaggagagattggaaaatggattgctttagttgctgttgtt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25740493 |
aatttgtaccttcatttttgtctaatattattctactta----tttgcatgactacgcagaggagagattggaaaatggattgctttagttgctgttgtt |
25740588 |
T |
|
| Q |
117 |
ttaaggctttttattccaaagcatttccctggtatgttacacttttacttaaacttaacagtataatccgtctcatagtctattaaaagttatattagct |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25740589 |
ttaaggctttttattccaaagcatttccctggtatgttacacttttacttaaacttaacagtataatccgtttcatagtctattaaaagttatattagca |
25740688 |
T |
|
| Q |
217 |
cctaaatgcatgtggaaaccttttttacactgaatgtgcatactaattaaactctaatgtttgattgtcacactattaataaagagaaattcaattacat |
316 |
Q |
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|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| || ||| |
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| T |
25740689 |
cctaaatgcatgtggaaaacttttttgcactgaatgtgcatactaattaaactctaatgtttgattgtcacactattaataaagaaatattcacttgcat |
25740788 |
T |
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| Q |
317 |
tgcgccgcttaacaccctttgcttctc |
343 |
Q |
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||||||||||||||||||||| ||||| |
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| T |
25740789 |
tgcgccgcttaacaccctttgtttctc |
25740815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 25744193 - 25744363
Alignment:
| Q |
17 |
aatttgtaccttcatttttgtctaatattattctacttacttatttacatgactacgcagaggagagattggaaaatggattgctttagttgctgttgtt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25744193 |
aatttgtaccttcatttttgtctaatattattctactta----tttgcatgactacgcagaggagagattggaaaatggattgctttagttgctgttgtt |
25744288 |
T |
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| Q |
117 |
ttaaggctttttattccaaagcatttccctggtatgttacacttttacttaaacttaacagtataatccgtctca |
191 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| ||| ||||| |
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| T |
25744289 |
ttaaggctttttattccaaagcatttcccaggtatgttacacttttacttgaacttaactgtatagtccttctca |
25744363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 17383401 - 17383504
Alignment:
| Q |
21 |
tgtaccttcatttttgtctaatattattctacttacttatttacatgactacgcagaggagagattggaaaatggattgctttagttgctgttgttttaa |
120 |
Q |
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|||||||||||||||||| |||||||| |||||| || | ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
17383401 |
tgtaccttcatttttgtcacatattattatacttattttt----atgactatgcagaggagagattggaaaatgaattgctttagttgctgttgttttaa |
17383496 |
T |
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| Q |
121 |
ggcttttt |
128 |
Q |
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|||||||| |
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| T |
17383497 |
ggcttttt |
17383504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 24 - 128
Target Start/End: Original strand, 8534989 - 8535089
Alignment:
| Q |
24 |
accttcatttttgtctaatattattctacttacttatttacatgactacgcagaggagagattggaaaatggattgctttagttgctgttgttttaaggc |
123 |
Q |
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|||||||||||||||| ||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8534989 |
accttcatttttgtctcatattattctactta----ttttcatgactatgcagaggagagattggaaaatggattgctttagttgctgttgttttaaggc |
8535084 |
T |
|
| Q |
124 |
ttttt |
128 |
Q |
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||||| |
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|
| T |
8535085 |
ttttt |
8535089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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