View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11167_low_13 (Length: 303)
Name: NF11167_low_13
Description: NF11167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11167_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 9 - 288
Target Start/End: Complemental strand, 17931909 - 17931630
Alignment:
| Q |
9 |
agcagagagcagagcgaatcgaagagaaaagggcattgaagtataagcaacaaacattaaagaatcctttactaggtaaaatagtccaaatcatgcattc |
108 |
Q |
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| T |
17931909 |
agcatagagcagagcgaatcgaagagaaaagggcattgaagtataagcaacaaacatcaaagaatcctttactaggtaaaatagtccaaatcatgcattc |
17931810 |
T |
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| Q |
109 |
atttttcagtatctaatacacgtgtctgacaacttaatgtctatcagcagcaaattctgaagcacataaggaaaagttacctgtaaaaagattacgctta |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17931809 |
atttttcagtatctaatacacgtgtctgacaacttaatgtctatcagcagcaaattctgaagcacataaggaaaagttacctgtaaaaagattacgctta |
17931710 |
T |
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| Q |
209 |
actcaattgagacgtgaggttcgtatagggaatcaatgttctgccatacaaggacctgatgaaaattagaggtatatctt |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
17931709 |
actcaattgagacgtgaggttcgtatagggaatcaatgttctgccatgcaaggacctgatgaaaattagaggtatatctt |
17931630 |
T |
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