View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11167_low_14 (Length: 283)

Name: NF11167_low_14
Description: NF11167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11167_low_14
NF11167_low_14
[»] chr2 (3 HSPs)
chr2 (1-271)||(41494015-41494285)
chr2 (167-205)||(3817325-3817363)
chr2 (150-208)||(16013717-16013775)
[»] chr7 (3 HSPs)
chr7 (150-208)||(38123673-38123731)
chr7 (150-208)||(22310466-22310524)
chr7 (149-198)||(30182313-30182362)
[»] chr1 (5 HSPs)
chr1 (150-198)||(10324955-10325003)
chr1 (150-194)||(29759632-29759676)
chr1 (149-192)||(31362691-31362734)
chr1 (150-192)||(33693041-33693083)
chr1 (165-193)||(14515679-14515707)
[»] chr3 (3 HSPs)
chr3 (149-208)||(37703118-37703177)
chr3 (163-198)||(33792023-33792058)
chr3 (150-194)||(3776542-3776586)
[»] chr5 (2 HSPs)
chr5 (150-198)||(24306113-24306161)
chr5 (150-198)||(24367155-24367203)
[»] chr4 (2 HSPs)
chr4 (150-208)||(29904252-29904310)
chr4 (150-198)||(4243407-4243455)
[»] chr6 (2 HSPs)
chr6 (156-197)||(34620912-34620953)
chr6 (156-197)||(34748349-34748390)
[»] chr8 (1 HSPs)
chr8 (160-208)||(35495290-35495338)


Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 41494285 - 41494015
Alignment:
Q  1 caatcaaaatactattattgttagtatgtttgattacacttttaattgggatataattgattttaaatgtgtaaaactgattttagcatgcttgttttct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  41494285 caatcaaaatactattattgttagtatgtttgattacacttttaattgggatataattgattttaaatgtgcaaaactgattttagcatgcttgttttct 41494186  T
Q  101 ttaaaatagatttgatcttatctctcgaatcaattttactttaagccgaaaattgtagcttctgattttataattgatttttacacttaaatttattggt 200  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41494185 ttaaaatagatttgatcttatctctagaatcaattttactttaagctgaaaattgtagcttctgattttataattgatttttacacttaaatttattggt 41494086  T
Q  201 caattcaca-taatatatctaaacataaatcannnnnnncgtggagtgtggggaggttttgttagttgtctc 271  Q
    |||||||||  |||||||| ||| ||||||||       |||||||||||||||||||||||| ||||||||    
T  41494085 caattcacacgaatatatccaaatataaatca-ttttttcgtggagtgtggggaggttttgttggttgtctc 41494015  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 205
Target Start/End: Complemental strand, 3817363 - 3817325
Alignment:
Q  167 tttataattgatttttacacttaaatttattggtcaatt 205  Q
    |||||||||||||||||||||||||||| ||| ||||||    
T  3817363 tttataattgatttttacacttaaatttgttgttcaatt 3817325  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 16013775 - 16013717
Alignment:
Q  150 aaattgtagcttctgattttataattgatttttacacttaaatttattggtcaattcac 208  Q
    |||||||| ||||| ||| || || ||||||||||||| ||||||||||||||| ||||    
T  16013775 aaattgtaacttctaattctagaaatgatttttacactcaaatttattggtcaactcac 16013717  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 38123731 - 38123673
Alignment:
Q  150 aaattgtagcttctgattttataattgatttttacacttaaatttattggtcaattcac 208  Q
    |||||||||||||| ||| || |||||||||||||||| ||||||||||||||| ||||    
T  38123731 aaattgtagcttctaattctagaattgatttttacactcaaatttattggtcaactcac 38123673  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 22310524 - 22310466
Alignment:
Q  150 aaattgtagcttctgattttataattgatttttacacttaaatttattggtcaattcac 208  Q
    ||||| |||||||| ||| || |||| |||||||||||||||||||||  |||||||||    
T  22310524 aaattatagcttctaattctagaattaatttttacacttaaatttatttttcaattcac 22310466  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 198
Target Start/End: Complemental strand, 30182362 - 30182313
Alignment:
Q  149 aaaattgtagcttctgattttataattgatttttacacttaaatttattg 198  Q
    ||||||||||||| ||||| || |||| ||||||||||| ||||||||||    
T  30182362 aaaattgtagcttttgattctagaattaatttttacactcaaatttattg 30182313  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 10325003 - 10324955
Alignment:
Q  150 aaattgtagcttctgattttataattgatttttacacttaaatttattg 198  Q
    |||||||||||| ||||| ||||||||||||||||||| ||||||||||    
T  10325003 aaattgtagcttttgattctataattgatttttacactcaaatttattg 10324955  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 29759632 - 29759676
Alignment:
Q  150 aaattgtagcttctgattttataattgatttttacacttaaattt 194  Q
    |||||| ||||||||||| ||||||||||||||||||| ||||||    
T  29759632 aaattggagcttctgattctataattgatttttacactcaaattt 29759676  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 192
Target Start/End: Original strand, 31362691 - 31362734
Alignment:
Q  149 aaaattgtagcttctgattttataattgatttttacacttaaat 192  Q
    ||||||| |||||||||||||| |||||||||||||||| ||||    
T  31362691 aaaattgcagcttctgattttagaattgatttttacactaaaat 31362734  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 192
Target Start/End: Original strand, 33693041 - 33693083
Alignment:
Q  150 aaattgtagcttctgattttataattgatttttacacttaaat 192  Q
    |||||||||||| ||||| ||||||||||||||||||| ||||    
T  33693041 aaattgtagcttttgattctataattgatttttacactcaaat 33693083  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 193
Target Start/End: Complemental strand, 14515707 - 14515679
Alignment:
Q  165 attttataattgatttttacacttaaatt 193  Q
    |||||||||||||||||||||||||||||    
T  14515707 attttataattgatttttacacttaaatt 14515679  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 37703118 - 37703177
Alignment:
Q  149 aaaattgtagcttctgattttataattgatttttacacttaaatttattggtcaattcac 208  Q
    ||||||||| ||||| |||||| |||| ||||||||||| |||||||||| |||||||||    
T  37703118 aaaattgtaacttcttattttaaaattaatttttacactcaaatttattgttcaattcac 37703177  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 198
Target Start/End: Complemental strand, 33792058 - 33792023
Alignment:
Q  163 tgattttataattgatttttacacttaaatttattg 198  Q
    |||||||||||||||||||||||| |||||||||||    
T  33792058 tgattttataattgatttttacacataaatttattg 33792023  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 3776542 - 3776586
Alignment:
Q  150 aaattgtagcttctgattttataattgatttttacacttaaattt 194  Q
    |||||||||||||||||| || |||| ||||||||||| ||||||    
T  3776542 aaattgtagcttctgattctagaattaatttttacactcaaattt 3776586  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 24306161 - 24306113
Alignment:
Q  150 aaattgtagcttctgattttataattgatttttacacttaaatttattg 198  Q
    |||||||| ||| ||||| ||||||||||||||||||| ||||||||||    
T  24306161 aaattgtaacttttgattctataattgatttttacactcaaatttattg 24306113  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 24367155 - 24367203
Alignment:
Q  150 aaattgtagcttctgattttataattgatttttacacttaaatttattg 198  Q
    |||||||| ||| ||||| ||||||||||||||||||| ||||||||||    
T  24367155 aaattgtaacttttgattctataattgatttttacactcaaatttattg 24367203  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 208
Target Start/End: Original strand, 29904252 - 29904310
Alignment:
Q  150 aaattgtagcttctgattttataattgatttttacacttaaatttattggtcaattcac 208  Q
    |||||||||||||| ||| || || |||| |||||||| |||||||||| |||||||||    
T  29904252 aaattgtagcttctaattctagaactgatgtttacactcaaatttattgttcaattcac 29904310  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 4243407 - 4243455
Alignment:
Q  150 aaattgtagcttctgattttataattgatttttacacttaaatttattg 198  Q
    |||||| ||||| ||||| || |||||||||||||||| ||||||||||    
T  4243407 aaattggagcttttgattctagaattgatttttacactcaaatttattg 4243455  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 34620912 - 34620953
Alignment:
Q  156 tagcttctgattttataattgatttttacacttaaatttatt 197  Q
    |||||||||||| || |||||||||||||||| |||||||||    
T  34620912 tagcttctgattctagaattgatttttacactaaaatttatt 34620953  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 34748349 - 34748390
Alignment:
Q  156 tagcttctgattttataattgatttttacacttaaatttatt 197  Q
    |||||||||||| || |||||||||||||||| |||||||||    
T  34748349 tagcttctgattctagaattgatttttacactaaaatttatt 34748390  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 35495290 - 35495338
Alignment:
Q  160 ttctgattttataattgatttttacacttaaatttattggtcaattcac 208  Q
    |||||||| ||||||||||||||| ||| |||||||||| |||| ||||    
T  35495290 ttctgattctataattgatttttatactcaaatttattgttcaaatcac 35495338  T

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