View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11167_low_15 (Length: 276)
Name: NF11167_low_15
Description: NF11167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11167_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 47 - 258
Target Start/End: Original strand, 21523273 - 21523484
Alignment:
| Q |
47 |
ttcgaatggcaaatagatataatatatacgagaaagagaatgaatgtatcagctcgtttaggttcacacagaacactaaatattgaacttggaaatgttt |
146 |
Q |
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| T |
21523273 |
ttcgaatgacaaatagatataatatatacgagaaagagaatgaatgtatcagttcggtcaggttcacacagaacactaaatattgaacttggaaatgttt |
21523372 |
T |
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| Q |
147 |
attgtgttcgtacattatgtaaattataaagaaggaatagttgccttattttttatatgataaaatggtaaatgttggtttgattattagggatggaaat |
246 |
Q |
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| T |
21523373 |
attgtgtttgtacattatgtaaattataaagaaggaagaattgccttattttttatatgataaaatggtaaattttggtttgattattagggatggaaat |
21523472 |
T |
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| Q |
247 |
aggccagaccgg |
258 |
Q |
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| T |
21523473 |
aggtcaggccgg |
21523484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 93 - 233
Target Start/End: Original strand, 21538486 - 21538629
Alignment:
| Q |
93 |
tatcagctcgtttaggttcacacagaacactaaatattgaacttggaaatgtttattgtgttcgtacattatgtaa---attataaagaaggaatagttg |
189 |
Q |
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| T |
21538486 |
tatcagctaattgaggttcacacatcacactaaatattgaatttgaaaatgcttattgtgtttgtacatgatgtaagttattatagagaaggaaaaattg |
21538585 |
T |
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| Q |
190 |
ccttattttttatatgataaaatggtaaatgttggtttgattat |
233 |
Q |
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| T |
21538586 |
ccttatttttgatatgataaaatggtaaatgtttgtttgattat |
21538629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 21538406 - 21538455
Alignment:
| Q |
79 |
aaagagaatgaatgtatcagctcgtttaggttcacacagaacactaaata |
128 |
Q |
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| T |
21538406 |
aaagagaatgaatgtatcggctggttgaggttcacacggaacaataaata |
21538455 |
T |
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