View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11167_low_18 (Length: 236)
Name: NF11167_low_18
Description: NF11167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11167_low_18 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 96171 - 95954
Alignment:
| Q |
1 |
ttaccatttcttctaagtttattatcttcctcttctgaaaacgatgtaaatcctccgtaaggtggcgcaggacaaattccaattccactaccatatttcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
96171 |
ttaccatttcttctaagtttattatcttcctcttctgaaaacgatgtaaatcctccgtaaggtggcgcaggacaaattccaattccactaccatatttcc |
96072 |
T |
|
| Q |
101 |
accctgacgactccaacattatttcgccttttttccctccgaattccaacacgtagttcgccgttttcagatctcaaaaacacgactgaatccccagaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
96071 |
accctgacgactccaacattatttcgccttttttccctccaaattccaacacgtagttcgccgttttcagatctcaaaaacacgactgaatccccagaag |
95972 |
T |
|
| Q |
201 |
caagtttcttgtcactga |
218 |
Q |
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|||||||||||||||||| |
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| T |
95971 |
caagtttcttgtcactga |
95954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 88163 - 87938
Alignment:
| Q |
1 |
ttaccatttcttctaagtttattatcttcctcttctgaaaacgatgtaaatcctccgtaaggtggcgcaggacaaattccaattccactaccatatttcc |
100 |
Q |
| |
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||||| ||||||| ||||||||||||||||||| | |||||||||| |||||||||||||||||| |||| |||||||||||||||||||||| |||||| |
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| T |
88163 |
ttaccgtttcttcgaagtttattatcttcctctcccgaaaacgatggaaatcctccgtaaggtggtgcagcacaaattccaattccactaccagatttcc |
88064 |
T |
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| Q |
101 |
accctga--------cgactccaacattatttcgccttttttccctccgaattccaacacgtagttcgccgttttcagatctcaaaaacacgactgaatc |
192 |
Q |
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| T |
88063 |
accctgacaaaggatcgactccaacattatttcgccttttagccctccgaattccaacatgaagatcgccgttttcagatctcaaaaacacaatcgaatc |
87964 |
T |
|
| Q |
193 |
cccagaagcaagtttcttgtcactga |
218 |
Q |
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|||||| |||||||||||||| |||| |
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| T |
87963 |
cccagacgcaagtttcttgtcgctga |
87938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 40870111 - 40870328
Alignment:
| Q |
1 |
ttaccatttcttctaagtttattatcttcctcttctgaaaacgatgtaaatcctccgtaaggtggcgcaggacaaattccaattccactaccatatttcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40870111 |
ttaccatttcttctaagtttattatcttcctcttctgaaaacgatgtaaatcctccgtaaggtggcgcaggacaaattccaattccactaccatatttcc |
40870210 |
T |
|
| Q |
101 |
accctgacgactccaacattatttcgccttttttccctccgaattccaacacgtagttcgccgttttcagatctcaaaaacacgactgaatccccagaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40870211 |
accctgacgactccaacattatttcgccttttttccctccaaattccaacacgtagttcgccgttttcagatctcaaaaacacgactgaatccccagaag |
40870310 |
T |
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| Q |
201 |
caagtttcttgtcactga |
218 |
Q |
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|||||||||||||||||| |
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| T |
40870311 |
caagtttcttgtcactga |
40870328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 40878120 - 40878345
Alignment:
| Q |
1 |
ttaccatttcttctaagtttattatcttcctcttctgaaaacgatgtaaatcctccgtaaggtggcgcaggacaaattccaattccactaccatatttcc |
100 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||| | |||||||||| |||||||||||||||||| |||| |||||||||||||||||||||| |||||| |
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| T |
40878120 |
ttaccgtttcttcgaagtttattatcttcctctcccgaaaacgatggaaatcctccgtaaggtggtgcagcacaaattccaattccactaccagatttcc |
40878219 |
T |
|
| Q |
101 |
accctga--------cgactccaacattatttcgccttttttccctccgaattccaacacgtagttcgccgttttcagatctcaaaaacacgactgaatc |
192 |
Q |
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||||||| ||||||||||||||||||||||||| ||||||||||||||||| | || |||||||||||||||||||||||||| | ||||| |
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| T |
40878220 |
accctgacaaaggatcgactccaacattatttcgccttttagccctccgaattccaacatgaagatcgccgttttcagatctcaaaaacacaatcgaatc |
40878319 |
T |
|
| Q |
193 |
cccagaagcaagtttcttgtcactga |
218 |
Q |
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|||||| |||||||||||||| |||| |
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| T |
40878320 |
cccagacgcaagtttcttgtcgctga |
40878345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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