View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11167_low_2 (Length: 574)
Name: NF11167_low_2
Description: NF11167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11167_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 441; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 27 - 556
Target Start/End: Original strand, 41331127 - 41331659
Alignment:
| Q |
27 |
gaaaatgaagtttggtccgtgaagagtatcgacaatggcatcgatcatgggagggagtgtcttcgtgtcttgtttagatgcttacaaatattcacgggag |
126 |
Q |
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| T |
41331127 |
gaaaatgaagtttggtccgtgaagagtatcgacaatggcatcgatcatgggagggagtgtcttcgtgtcttgtttagatgcttacaaatattcacgggag |
41331226 |
T |
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| Q |
127 |
aagagcaaatagtattttagtaggtcaca--------tatacatgttcaaacaaaattccgtgaccaatgtggacccatccaaagagtgctattggccac |
218 |
Q |
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| T |
41331227 |
aagagcaaatagtattttagtaggtcacaatgtcacatatacatgttgaaacaaaattccgtgaccaatgtggacccatccaaagagtgctcttggcca- |
41331325 |
T |
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| Q |
219 |
tcaatacccataatcaatcagatacgagaaactactaaacattatgcaatcatagcacatgaaaaactcattagtgaacatctttgtgctcattttactt |
318 |
Q |
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| T |
41331326 |
----tacccataatcaatcagatacgagaaactactaaaaattatgcaatcatagcacatgaaaaactcattagtgaaaatctttgtgctcattttactt |
41331421 |
T |
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| Q |
319 |
taattcaattcaatattaaggaattaaggataactaactatgctaatgaactaatggtggatggtttcgcatgtaatggatatagattctctgctttaat |
418 |
Q |
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| T |
41331422 |
taattcaattcaatattaaggaattaaggataactaactatgctaatgaactaatggtggatggttttgcatgtaatggatatagattatctgctttaat |
41331521 |
T |
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| Q |
419 |
taatgcaagtatttgcacctactaattgatctcagccattaatttaaaatcaatcgactcccgttgcatcttaatcaacacacttttaattaatttatat |
518 |
Q |
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| T |
41331522 |
taatgcaagtatttgcacttactaattgatctcagccattaatttaaaatcaatcgattcccgttgcgtcttaatcaactcacttttaattaatttatat |
41331621 |
T |
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| Q |
519 |
tattaatttgaaatcaaataaccaacatggattgatac |
556 |
Q |
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| T |
41331622 |
tattaatttgaaatcaaatgaccaagatggattgatac |
41331659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 41331072 - 41331104
Alignment:
| Q |
2 |
agaatacacaggtctattttacatggaaaatga |
34 |
Q |
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| T |
41331072 |
agaatgcacaggtctattttacatggaaaatga |
41331104 |
T |
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