View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11167_low_4 (Length: 476)

Name: NF11167_low_4
Description: NF11167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11167_low_4
NF11167_low_4
[»] chr4 (2 HSPs)
chr4 (235-461)||(7988057-7988276)
chr4 (235-280)||(7987463-7987508)
[»] chr7 (3 HSPs)
chr7 (239-461)||(32870324-32870539)
chr7 (235-290)||(32871078-32871133)
chr7 (236-286)||(36845144-36845194)
[»] chr1 (4 HSPs)
chr1 (11-173)||(52455528-52455693)
chr1 (235-351)||(48686038-48686160)
chr1 (235-351)||(37689022-37689144)
chr1 (235-411)||(50268229-50268405)
[»] chr2 (3 HSPs)
chr2 (235-293)||(4768988-4769046)
chr2 (236-286)||(23875296-23875346)
chr2 (236-286)||(6084927-6084977)
[»] chr5 (1 HSPs)
chr5 (239-286)||(42650816-42650863)
[»] chr3 (1 HSPs)
chr3 (239-286)||(49161750-49161797)
[»] scaffold0180 (1 HSPs)
scaffold0180 (237-311)||(23004-23082)


Alignment Details
Target: chr4 (Bit Score: 180; Significance: 5e-97; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 235 - 461
Target Start/End: Complemental strand, 7988276 - 7988057
Alignment:
Q  235 ggaccattagatcaagcaaggaacataatattatcatagtctctcaacactatattttacaacatcttccaccaccatcctgttcttctgtttttcttca 334  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7988276 ggaccattagattaagtaaggaacataatattatcatagtctctcaacactatattttacaacatcttccaccaccatcctgttcttctttttttcttca 7988177  T
Q  335 accatgtgcaactaactaacaacacaatcccaccgaattctcgtcggagacaaaatatacatcgttttgtaattcatgattcatccatcattctatcatt 434  Q
    |||||||||||||||||   ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||    
T  7988176 accatgtgcaactaact---aacacaatcccaccggattctcgtcggagacaaaatatacatcgttttgtaattcatgatt----catcattctatcatt 7988084  T
Q  435 taattataaccctctgaaacaaaaact 461  Q
    |||||||||||||||||||||||||||    
T  7988083 taattataaccctctgaaacaaaaact 7988057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 7987463 - 7987508
Alignment:
Q  235 ggaccattagatcaagcaaggaacataatattatcatagtctctca 280  Q
    |||| ||||||||| | |||||||||||||||||||||||||||||    
T  7987463 ggactattagatcatgtaaggaacataatattatcatagtctctca 7987508  T

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Target: chr7 (Bit Score: 176; Significance: 1e-94; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 239 - 461
Target Start/End: Original strand, 32870324 - 32870539
Alignment:
Q  239 cattagatcaagcaaggaacataatattatcatagtctctcaacactatattttacaacatcttccaccaccatcctgttcttctgtttttcttcaacca 338  Q
    ||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32870324 cattagatcaagttagaaacataatattatcatagtctctcaacactatattttacaacatcttccaccaccatcctgttcttctgtttttcttcaacca 32870423  T
Q  339 tgtgcaactaactaacaacacaatcccaccgaattctcgtcggagacaaaatatacatcgttttgtaattcatgattcatccatcattctatcatttaat 438  Q
    |||||||||||||   ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||    
T  32870424 tgtgcaactaact---aacacaatcccaccggattctcgtcggagacaaaatatacatcgttttgtaattcatgatt----catcattctatcatttaat 32870516  T
Q  439 tataaccctctgaaacaaaaact 461  Q
    |||||||||||||||||||||||    
T  32870517 tataaccctctgaaacaaaaact 32870539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 290
Target Start/End: Complemental strand, 32871133 - 32871078
Alignment:
Q  235 ggaccattagatcaagcaaggaacataatattatcatagtctctcaacactatatt 290  Q
    |||||||| ||||| | || ||||||||||||||||||||||||||| ||||||||    
T  32871133 ggaccatttgatcatgtaaagaacataatattatcatagtctctcaatactatatt 32871078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 286
Target Start/End: Complemental strand, 36845194 - 36845144
Alignment:
Q  236 gaccattagatcaagcaaggaacataatattatcatagtctctcaacacta 286  Q
    ||||||||||| | | |||||||||||||||||||||||| ||||||||||    
T  36845194 gaccattagattatgtaaggaacataatattatcatagtccctcaacacta 36845144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 136; Significance: 9e-71; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 11 - 173
Target Start/End: Original strand, 52455528 - 52455693
Alignment:
Q  11 gagcacagatgccaaatttaaattgattgaataaccattaca---caatcaaccgatggtaatttgtaatggtattctaaaaggatgcaacatagttttg 107  Q
    ||||| |||| |||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52455528 gagcatagataccaaatttaaattgattgaataaccattacatgacaatcaaccgatggtaatttgtaatggtattctaaaaggatgcaacatagttttg 52455627  T
Q  108 atcaagttcaaagaccatacgacaattttcctacatatgtggcatcgttaataaagtggttaaagg 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  52455628 atcaagttcaaagaccatacgacaattttcctacatatgtggcatggtaaataaagtggttaaagg 52455693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 235 - 351
Target Start/End: Complemental strand, 48686160 - 48686038
Alignment:
Q  235 ggaccattagatcaagcaaggaacataatattatcatagtctctcaacactatatttt---acaacatcttccaccaccatc---ctgttcttctgtttt 328  Q
    |||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||   ||| |||||||||||||||||   || ||||||| | ||    
T  48686160 ggaccattagattaagtaaggaacataatattataatagtctctcaacactatattttctcacaccatcttccaccaccatcctactcttcttctatctt 48686061  T
Q  329 tcttcaaccatgtgcaactaact 351  Q
    |||||||||||||||||||||||    
T  48686060 tcttcaaccatgtgcaactaact 48686038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 235 - 351
Target Start/End: Complemental strand, 37689144 - 37689022
Alignment:
Q  235 ggaccattagatcaagcaaggaacataatattatcatagtctctcaacactatatttt---acaacatcttccaccaccatcctgttcttctgtt---tt 328  Q
    |||| ||||||| ||| ||||||||||||||||| |||||||||||||| ||||||||   ||| |||| ||||||||||||||  ||||||  |   ||    
T  37689144 ggactattagattaagtaaggaacataatattataatagtctctcaacattatattttctcacaccatcctccaccaccatcctactcttcttgtatctt 37689045  T
Q  329 tcttcaaccatgtgcaactaact 351  Q
    |||||||||||||||||||||||    
T  37689044 tcttcaaccatgtgcaactaact 37689022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 235 - 411
Target Start/End: Complemental strand, 50268405 - 50268229
Alignment:
Q  235 ggaccattagatcaagcaaggaacataatattatcatagtctctcaacactatatttt---acaacatcttccaccaccatcctg----ttcttctgttt 327  Q
    |||| ||||||| ||| ||||||||||||||||| ||| ||||| |||||||||||||   ||| ||||||||||||| |||||     ||||||| | |    
T  50268405 ggacaattagattaagtaaggaacataatattataataatctcttaacactatattttctcacaccatcttccaccactatccttactcttcttctatct 50268306  T
Q  328 ttcttcaaccatgtgcaactaactaacaacacaatcccaccgaattctcgtcggagacaaaatatacatcgttttgtaattcat 411  Q
    ||||||||||||||||||||||||       |||||   ||| | |||||||||||||||| ||||| ||||||| ||||||||    
T  50268305 ttcttcaaccatgtgcaactaact-------caatcttgccggaatctcgtcggagacaaagtatacctcgttttctaattcat 50268229  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 235 - 293
Target Start/End: Complemental strand, 4769046 - 4768988
Alignment:
Q  235 ggaccattagatcaagcaaggaacataatattatcatagtctctcaacactatatttta 293  Q
    |||| ||||||||||| ||||||||||||||||||||||||| |||||  |||||||||    
T  4769046 ggactattagatcaagtaaggaacataatattatcatagtctgtcaaccgtatatttta 4768988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 236 - 286
Target Start/End: Original strand, 23875296 - 23875346
Alignment:
Q  236 gaccattagatcaagcaaggaacataatattatcatagtctctcaacacta 286  Q
    ||||||||||||| | ||||||||||||||||||||||||| |||||||||    
T  23875296 gaccattagatcatgtaaggaacataatattatcatagtctttcaacacta 23875346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 286
Target Start/End: Original strand, 6084927 - 6084977
Alignment:
Q  236 gaccattagatcaagcaaggaacataatattatcatagtctctcaacacta 286  Q
    |||||||| |||| | ||| ||||||||||||||||||||| |||||||||    
T  6084927 gaccattaaatcatgtaagaaacataatattatcatagtctttcaacacta 6084977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 286
Target Start/End: Original strand, 42650816 - 42650863
Alignment:
Q  239 cattagatcaagcaaggaacataatattatcatagtctctcaacacta 286  Q
    |||||||||| | ||||||||||||||||||||||||| |||||||||    
T  42650816 cattagatcatgtaaggaacataatattatcatagtctttcaacacta 42650863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 286
Target Start/End: Complemental strand, 49161797 - 49161750
Alignment:
Q  239 cattagatcaagcaaggaacataatattatcatagtctctcaacacta 286  Q
    |||||||||| | ||||||||||||||||||||||||| |||||||||    
T  49161797 cattagatcatgtaaggaacataatattatcatagtctttcaacacta 49161750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 311
Target Start/End: Complemental strand, 23082 - 23004
Alignment:
Q  237 accattagatcaagcaaggaacataatattatcatagtctctcaacactatatttt----acaacatcttccaccacca 311  Q
    |||||||||| ||  | |||||||||| ||||||| |||||||||||||| |||||    ||| |||||||||||||||    
T  23082 accattagattaaatagggaacataattttatcatggtctctcaacactaaatttttgtcacatcatcttccaccacca 23004  T

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